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#3586 updated PNS_neurons.csv#3587

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RiveraAndrea83 merged 2 commits intomasterfrom
3586-links-to-3471-add-pns_neuronscsv-table-updated
Mar 13, 2026
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#3586 updated PNS_neurons.csv#3587
RiveraAndrea83 merged 2 commits intomasterfrom
3586-links-to-3471-add-pns_neuronscsv-table-updated

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updated PNS_neurons.csv table

@RiveraAndrea83 RiveraAndrea83 linked an issue Mar 13, 2026 that may be closed by this pull request
@RiveraAndrea83 RiveraAndrea83 self-assigned this Mar 13, 2026
@RiveraAndrea83 RiveraAndrea83 requested a review from dosumis March 13, 2026 11:30
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dosumis commented Mar 13, 2026

#gogoeditdiff

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Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

  • Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
  • Version IRI: http://purl.obolibrary.org/obo/cl/releases/2026-03-13/cl-base.owl
  • Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

  • Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
  • Version IRI: http://purl.obolibrary.org/obo/cl/releases/2026-03-13/cl-base.owl
  • Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

PR_000002097 http://purl.obolibrary.org/obo/PR_000002097

Added

PR_000002104 http://purl.obolibrary.org/obo/PR_000002104

Added

PR_000004968 http://purl.obolibrary.org/obo/PR_000004968

Added

PR_000004984 http://purl.obolibrary.org/obo/PR_000004984

Removed

PR_000006897 http://purl.obolibrary.org/obo/PR_000006897

Added

PR_000013041 http://purl.obolibrary.org/obo/PR_000013041

Added

PR_000013289 http://purl.obolibrary.org/obo/PR_000013289

Added

PR_000013895 http://purl.obolibrary.org/obo/PR_000013895

Added

PR_000016003 http://purl.obolibrary.org/obo/PR_000016003

Added

PR_000032708 http://purl.obolibrary.org/obo/PR_000032708

Added

UBERON_0002834 http://purl.obolibrary.org/obo/UBERON_0002834

Added

UBERON_0002835 http://purl.obolibrary.org/obo/UBERON_0002835

Added

UBERON_0002836 http://purl.obolibrary.org/obo/UBERON_0002836

Added

UBERON_0002837 http://purl.obolibrary.org/obo/UBERON_0002837

Added

UBERON_0014463 http://purl.obolibrary.org/obo/UBERON_0014463

Added

celiac ganglion CGRP neuron http://purl.obolibrary.org/obo/CL_4033130

Added

celiac ganglion PHI neuron http://purl.obolibrary.org/obo/CL_4033129

Added

celiac ganglion SOM neuron http://purl.obolibrary.org/obo/CL_4033132

Added

celiac ganglion SOM/CGRP neuron http://purl.obolibrary.org/obo/CL_4033133

Added

celiac ganglion SP neuron http://purl.obolibrary.org/obo/CL_4033131

Added

celiac ganglion VIP neuron http://purl.obolibrary.org/obo/CL_4033128

Added

cervical dorsal root ganglion CGRP neuron http://purl.obolibrary.org/obo/CL_4079000

Added

cervical dorsal root ganglion Nav1.7 neuron http://purl.obolibrary.org/obo/CL_4079002

Added

cervical dorsal root ganglion Nav1.9 neuron http://purl.obolibrary.org/obo/CL_4079003

Added

cervical dorsal root ganglion Piezo2 neuron http://purl.obolibrary.org/obo/CL_4079005

Added

cervical dorsal root ganglion RET neuron http://purl.obolibrary.org/obo/CL_4079006

Added

cervical dorsal root ganglion TRPV1 neuron http://purl.obolibrary.org/obo/CL_4079008

Added

cervical dorsal root ganglion endothelin-1 neuron http://purl.obolibrary.org/obo/CL_4079001

Added

cervical dorsal root ganglion peripherin neuron http://purl.obolibrary.org/obo/CL_4079004

Added

cervical dorsal root ganglion substance P neuron http://purl.obolibrary.org/obo/CL_4079007

Added

cervicothoracic ganglion TH neuron http://purl.obolibrary.org/obo/CL_4033114

Added

cervicothoracic ganglion TH/NPY neuron http://purl.obolibrary.org/obo/CL_4033115

Added

cervicothoracic ganglion VAChT neuron http://purl.obolibrary.org/obo/CL_4033117

Added

cervicothoracic ganglion VIP neuron http://purl.obolibrary.org/obo/CL_4033116

Added

cervicothoracic ganglion enkephalin neuron http://purl.obolibrary.org/obo/CL_4033113

Added

ciliary ganglion TH neuron http://purl.obolibrary.org/obo/CL_4033140

Removed

Added

ciliary ganglion VIP/PHI neuron http://purl.obolibrary.org/obo/CL_4033139

Removed

Added

  • ciliary ganglion VIP/PHI neuron date "2026-03-13T11:13:54Z"^^dateTime

  • ciliary ganglion VIP/PHI neuron hasExactSynonym "ciliary ganglion VIP-PHI neuron"

  • ciliary ganglion VIP/PHI neuron IAO_0000115 "A parasympathetic postganglionic neuron whose soma is located in the ciliary ganglion and that co-expresses vasoactive intestinal peptide (VIP) and peptide histidine isoleucine (PHI, both encoded by the VIP gene). This neuron provides parasympathetic innervation to the eye, contributing to regulation of pupillary constriction and ciliary muscle accommodation. It has been identified in human ciliary ganglia by immunohistochemistry (Kiyokawa et al. 2012, PMID:22095632). VIP/PHI co-expression distinguishes this subpopulation from other cholinergic parasympathetic neurons in the ciliary ganglion and is characteristic of a subset of cranial parasympathetic neurons in humans and other mammals."

  • ciliary ganglion VIP/PHI neuron SubClassOf parasympathetic neuron

dorsal root ganglion BRN3A neuron http://purl.obolibrary.org/obo/CL_4033175

Added

dorsal root ganglion CGRP neuron http://purl.obolibrary.org/obo/CL_4033176

Added

dorsal root ganglion EDN1 neuron http://purl.obolibrary.org/obo/CL_4033177

Added

dorsal root ganglion Nav1.7 neuron http://purl.obolibrary.org/obo/CL_4033178

Added

dorsal root ganglion Nav1.9 neuron http://purl.obolibrary.org/obo/CL_4033179

Added

dorsal root ganglion Piezo2 neuron http://purl.obolibrary.org/obo/CL_4033181

Added

dorsal root ganglion RET neuron http://purl.obolibrary.org/obo/CL_4033182

Added

dorsal root ganglion SP neuron http://purl.obolibrary.org/obo/CL_4033183

Added

dorsal root ganglion TRPV1 neuron http://purl.obolibrary.org/obo/CL_4033184

Added

dorsal root ganglion peripherin neuron http://purl.obolibrary.org/obo/CL_4033180

Added

inferior mesenteric ganglion SP neuron http://purl.obolibrary.org/obo/CL_4033136

Added

inferior mesenteric ganglion TH neuron http://purl.obolibrary.org/obo/CL_4033135

Added

intrinsic cardiac ganglion TH neuron http://purl.obolibrary.org/obo/CL_4079010

Added

jugular ganglion CGRP neuron http://purl.obolibrary.org/obo/CL_4033155

Added

jugular ganglion SP neuron http://purl.obolibrary.org/obo/CL_4033154

Added

jugular ganglion SPARCL1 neuron http://purl.obolibrary.org/obo/CL_4033156

Added

jugular ganglion TRPV1 neuron http://purl.obolibrary.org/obo/CL_4033152

Added

jugular ganglion TRPV2 neuron http://purl.obolibrary.org/obo/CL_4033153

Added

lower airway ganglion ChAT/VIP neuron http://purl.obolibrary.org/obo/CL_4033127

Removed

Added

lumbar dorsal root ganglion CGRP neuron http://purl.obolibrary.org/obo/CL_4079011

Added

lumbar dorsal root ganglion Nav1.7 neuron http://purl.obolibrary.org/obo/CL_4079013

Added

lumbar dorsal root ganglion Nav1.9 neuron http://purl.obolibrary.org/obo/CL_4079014

Added

lumbar dorsal root ganglion Piezo2 neuron http://purl.obolibrary.org/obo/CL_4079016

Added

lumbar dorsal root ganglion RET neuron http://purl.obolibrary.org/obo/CL_4079017

Added

lumbar dorsal root ganglion TRPV1 neuron http://purl.obolibrary.org/obo/CL_4079019

Added

lumbar dorsal root ganglion endothelin-1 neuron http://purl.obolibrary.org/obo/CL_4079012

Added

lumbar dorsal root ganglion peripherin neuron http://purl.obolibrary.org/obo/CL_4079015

Added

lumbar dorsal root ganglion substance P neuron http://purl.obolibrary.org/obo/CL_4079018

Added

middle cervical ganglion DBH neuron http://purl.obolibrary.org/obo/CL_4033108

Added

middle cervical ganglion NPY neuron http://purl.obolibrary.org/obo/CL_4033111

Added

middle cervical ganglion TH neuron http://purl.obolibrary.org/obo/CL_4033109

Added

middle cervical ganglion TH/NPY neuron http://purl.obolibrary.org/obo/CL_4033110

Added

middle cervical ganglion VIP neuron http://purl.obolibrary.org/obo/CL_4033112

Added

myenteric ganglion of small intestine ChAT neuron http://purl.obolibrary.org/obo/CL_4033160

Removed

Added

myenteric ganglion of small intestine ChAT/CALR/SOM/SP neuron http://purl.obolibrary.org/obo/CL_4033165

Removed

Added

myenteric ganglion of small intestine VIP neuron http://purl.obolibrary.org/obo/CL_4033162

Removed

Added

myenteric ganglion of small intestine VIP/GAL neuron http://purl.obolibrary.org/obo/CL_4033166

Removed

Added

myenteric ganglion of small intestine nNOS neuron http://purl.obolibrary.org/obo/CL_4033161

Removed

Added

myenteric ganglion of small intestine nNOS/ChAT neuron http://purl.obolibrary.org/obo/CL_4033164

Removed

Added

myenteric ganglion of small intestine nNOS/VIP neuron http://purl.obolibrary.org/obo/CL_4033163

Removed

Added

nodose ganglion P2X3 neuron http://purl.obolibrary.org/obo/CL_4033149

Added

nodose ganglion PVALB neuron http://purl.obolibrary.org/obo/CL_4033151

Added

nodose ganglion TRPV1 neuron http://purl.obolibrary.org/obo/CL_4033148

Added

nodose ganglion TRPV2 neuron http://purl.obolibrary.org/obo/CL_4033150

Added

otic ganglion VIP neuron http://purl.obolibrary.org/obo/CL_4033138

Removed

Added

otic ganglion nNOS neuron http://purl.obolibrary.org/obo/CL_4033137

Removed

Added

ovarian nerve plexus ganglion TH neuron http://purl.obolibrary.org/obo/CL_4033174

Removed

Added

pelvic ganglion NPY/VAChT neuron http://purl.obolibrary.org/obo/CL_4033172

Removed

Added

pelvic ganglion TH neuron http://purl.obolibrary.org/obo/CL_4033167

Removed

Added

pelvic ganglion TH/DBH neuron http://purl.obolibrary.org/obo/CL_4033168

Removed

Added

pelvic ganglion VAChT neuron http://purl.obolibrary.org/obo/CL_4033169

Removed

Added

pelvic ganglion nNOS neuron http://purl.obolibrary.org/obo/CL_4033170

Removed

Added

pelvic ganglion nNOS/VAChT neuron http://purl.obolibrary.org/obo/CL_4033173

Removed

Added

pelvic ganglion nNOS/VIP neuron http://purl.obolibrary.org/obo/CL_4033171

Removed

Added

pterygopalatine ganglion VIP neuron http://purl.obolibrary.org/obo/CL_4033145

Removed

Added

pterygopalatine ganglion VIP/PHI neuron http://purl.obolibrary.org/obo/CL_4033144

Removed

Added

pterygopalatine ganglion nNOS neuron http://purl.obolibrary.org/obo/CL_4033146

Removed

Added

sacral dorsal root ganglion CGRP neuron http://purl.obolibrary.org/obo/CL_4079020

Added

sacral dorsal root ganglion Nav1.7 neuron http://purl.obolibrary.org/obo/CL_4079022

Added

sacral dorsal root ganglion Nav1.9 neuron http://purl.obolibrary.org/obo/CL_4079023

Added

sacral dorsal root ganglion Piezo2 neuron http://purl.obolibrary.org/obo/CL_4079025

Added

sacral dorsal root ganglion RET neuron http://purl.obolibrary.org/obo/CL_4079026

Added

sacral dorsal root ganglion TRPV1 neuron http://purl.obolibrary.org/obo/CL_4079028

Added

sacral dorsal root ganglion endothelin-1 neuron http://purl.obolibrary.org/obo/CL_4079021

Added

sacral dorsal root ganglion peripherin neuron http://purl.obolibrary.org/obo/CL_4079024

Added

sacral dorsal root ganglion substance P neuron http://purl.obolibrary.org/obo/CL_4079027

Added

submandibular ganglion TH cholinergic neuron http://purl.obolibrary.org/obo/CL_4033141

Removed

Added

submandibular ganglion VIP/PHI neuron http://purl.obolibrary.org/obo/CL_4033142

Removed

Added

submandibular ganglion nNOS neuron http://purl.obolibrary.org/obo/CL_4033143

Removed

Added

superior cervical ganglion CGRP neuron http://purl.obolibrary.org/obo/CL_4033107

Added

superior cervical ganglion NPY neuron http://purl.obolibrary.org/obo/CL_4033103

Added

superior cervical ganglion SST neuron http://purl.obolibrary.org/obo/CL_4033105

Added

superior cervical ganglion TH neuron http://purl.obolibrary.org/obo/CL_4033102

Added

superior cervical ganglion TH/DBH neuron http://purl.obolibrary.org/obo/CL_4033101

Added

superior cervical ganglion TH/NPY neuron http://purl.obolibrary.org/obo/CL_4033104

Added

superior cervical ganglion VIP neuron http://purl.obolibrary.org/obo/CL_4033106

Added

superior mesenteric ganglion SP neuron http://purl.obolibrary.org/obo/CL_4033134

Added

thoracic dorsal root ganglion CGRP neuron http://purl.obolibrary.org/obo/CL_4079029

Added

thoracic dorsal root ganglion Nav1.7 neuron http://purl.obolibrary.org/obo/CL_4079031

Added

thoracic dorsal root ganglion Nav1.9 neuron http://purl.obolibrary.org/obo/CL_4079032

Added

thoracic dorsal root ganglion Piezo2 neuron http://purl.obolibrary.org/obo/CL_4079034

Added

thoracic dorsal root ganglion RET neuron http://purl.obolibrary.org/obo/CL_4079035

Added

thoracic dorsal root ganglion TRPV1 neuron http://purl.obolibrary.org/obo/CL_4079037

Added

thoracic dorsal root ganglion endothelin-1 neuron http://purl.obolibrary.org/obo/CL_4079030

Added

thoracic dorsal root ganglion peripherin neuron http://purl.obolibrary.org/obo/CL_4079033

Added

thoracic dorsal root ganglion substance P neuron http://purl.obolibrary.org/obo/CL_4079036

Added

vestibular ganglion SP neuron http://purl.obolibrary.org/obo/CL_4033147

Removed

Added

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Here's a diff of your edit file (unreasoned)

Ontologies are identical

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Looks good. we could have a second round where we make the sensory types more specific (I think we have nociceptive neuron and we should have if we don't)

@RiveraAndrea83 RiveraAndrea83 merged commit cdbc0e9 into master Mar 13, 2026
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@RiveraAndrea83 RiveraAndrea83 deleted the 3586-links-to-3471-add-pns_neuronscsv-table-updated branch March 13, 2026 14:16
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Links to #3471 Add PNS_neurons.csv table updated

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