oesteban · oesteban · Jun 24, 2025 · Jun 24, 2025 · Jun 24, 2025
diff --git a/dataset_listing.tsv b/dataset_listing.tsv
@@ -82,3 +82,8 @@ mrs_fmrs	Functional MRS data involving a pain stimulus task from 15 subjects	[li
 2d_mb_pcasl	Siemens 2D MultiBand Multi-delay PCASL (m0 and noRF included within timeseries)	[link](https://osf.io/xrkc4/)	[@aptinis](https://github.com/aptinis)	anat, fmap, perf	T1w, asl, aslcontext, epi
 xeeg_hed_score	EEG and iEEG data with annotations of artifacts, seizures and modulators using HED-SCORE 		[@dorahermes](https://github.com/dorahermes)	anat, eeg, ieeg	T1w, channels, coordsystem, eeg, electrodes, events, ieeg
 dwi_deriv	exemplifies the storage of diffusion MRI derivates that may be generated on the Siemens XA platform.			dwi	dwi
+ps13-pipeline	Example PS13 PET atlas pipeline outputs	[link](https://doi.org/10.18112/openneuro.ds004401.v1.3.0)	[@bids-standard](https://github.com/bids-standard)	pet	pet,dseg
+ps13rev2034-pipeline	Revision of PS13 PET atlas outputs [link](https://doi.org/10.18112/openneuro.ds004401.v1.3.0)	[@bids-standard](https://github.com/bids-standard)	pet	pet,dseg
+ps13-study-template	PS13 atlas in study-specific template with conversions	[@bids-standard](https://github.com/bids-standard)	pet	pet,dseg
+ps13-study-template-rev	PS13 study template with atlas revision	[@bids-standard](https://github.com/bids-standard)	pet	pet,dseg
+suit-pipeline	Example SUIT cerebellum atlas pipeline outputs [link](https://github.com/jdiedrichsen/suit)	[@bids-standard](https://github.com/bids-standard)	anat	T1w,dseg,probseg,surf,shape
diff --git a/ps13-pipeline/.SKIP_VALIDATION b/ps13-pipeline/.SKIP_VALIDATION
diff --git a/ps13-pipeline/atlas-ps13_description.json b/ps13-pipeline/atlas-ps13_description.json
@@ -0,0 +1,6 @@
+{
+  "AtlasName": "PS13 COX-1 PET atlas",
+  "AtlasSampleSize": 13,
+  "SpatialReference": "MNI152Lin",
+  "Description": "Example atlas generated from PS13 PET data"
+}
diff --git a/ps13-pipeline/dataset_description.json b/ps13-pipeline/dataset_description.json
@@ -0,0 +1,11 @@
+{
+  "Name": "PS13 pipeline example",
+  "BIDSVersion": "1.10.0",
+  "DatasetType": "derivative",
+  "GeneratedBy": [
+    {
+      "Name": "PS13 Pipeline",
+      "Version": "1.0"
+    }
+  ]
+}
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_dseg.json b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_dseg.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_dseg.tsv b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_dseg.tsv
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-1p5_desc-spmvbmNopvc_pet.json b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-1p5_desc-spmvbmNopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-1p5_desc-spmvbmNopvc_pet.nii.gz b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-1p5_desc-spmvbmNopvc_pet.nii.gz
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-1p5_desc-spmvbmPvc_pet.json b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-1p5_desc-spmvbmPvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-1p5_desc-spmvbmPvc_pet.nii.gz b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-1p5_desc-spmvbmPvc_pet.nii.gz
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-1p5_stat-std_desc-spmvbmNopvc_pet.json b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-1p5_stat-std_desc-spmvbmNopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-1p5_stat-std_desc-spmvbmNopvc_pet.nii.gz b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-1p5_stat-std_desc-spmvbmNopvc_pet.nii.gz
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-1p5_stat-std_desc-spmvbmPvc_pet.json b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-1p5_stat-std_desc-spmvbmPvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-1p5_stat-std_desc-spmvbmPvc_pet.nii.gz b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-1p5_stat-std_desc-spmvbmPvc_pet.nii.gz
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_desc-fnirtNopvc_pet.json b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_desc-fnirtNopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_desc-fnirtNopvc_pet.nii.gz b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_desc-fnirtNopvc_pet.nii.gz
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_desc-fnirtPvc_pet.json b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_desc-fnirtPvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_desc-fnirtPvc_pet.nii.gz b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_desc-fnirtPvc_pet.nii.gz
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_desc-nopvc_pet.json b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_desc-nopvc_pet.nii.gz b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_desc-nopvc_pet.nii.gz
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_desc-pvc_pet.json b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_desc-pvc_pet.nii.gz b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_desc-pvc_pet.nii.gz
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_stat-std_desc-fnirtNopvc_pet.json b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_stat-std_desc-fnirtNopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_stat-std_desc-fnirtNopvc_pet.nii.gz b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_stat-std_desc-fnirtNopvc_pet.nii.gz
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_stat-std_desc-fnirtPvc_pet.json b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_stat-std_desc-fnirtPvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_stat-std_desc-fnirtPvc_pet.nii.gz b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_stat-std_desc-fnirtPvc_pet.nii.gz
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_stat-std_desc-nopvc_pet.json b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_stat-std_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_stat-std_desc-nopvc_pet.nii.gz b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_stat-std_desc-nopvc_pet.nii.gz
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_stat-std_desc-pvc_pet.json b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_stat-std_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_stat-std_desc-pvc_pet.nii.gz b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_res-2_stat-std_desc-pvc_pet.nii.gz
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_seg-nopvc_dseg.nii.gz b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_seg-nopvc_dseg.nii.gz
diff --git a/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_seg-pvc_dseg.nii.gz b/ps13-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_seg-pvc_dseg.nii.gz
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_desc-nopvc_pet.json b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "fsaverage space PET without PVC"}
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_desc-nopvc_pet.nii.gz b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_desc-nopvc_pet.nii.gz
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_desc-pvc_pet.json b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_desc-pvc_pet.nii.gz b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_desc-pvc_pet.nii.gz
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_dseg.json b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_dseg.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_dseg.tsv b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_dseg.tsv
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_desc-nopvc_pet.json b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_desc-nopvc_pet.shape.gii b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_desc-nopvc_pet.shape.gii
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_desc-pvc_pet.json b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_desc-pvc_pet.shape.gii b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_desc-pvc_pet.shape.gii
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_stat-std_desc-nopvc_pet.json b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_stat-std_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...ipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_stat-std_desc-nopvc_pet.shape.gii b/...ipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_stat-std_desc-nopvc_pet.shape.gii
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_stat-std_desc-pvc_pet.json b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_stat-std_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_stat-std_desc-pvc_pet.shape.gii b/...-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_stat-std_desc-pvc_pet.shape.gii
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_desc-nopvc_pet.json b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_desc-nopvc_pet.shape.gii b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_desc-nopvc_pet.shape.gii
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_desc-pvc_pet.json b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_desc-pvc_pet.shape.gii b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_desc-pvc_pet.shape.gii
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_stat-std_desc-nopvc_pet.json b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_stat-std_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...ipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_stat-std_desc-nopvc_pet.shape.gii b/...ipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_stat-std_desc-nopvc_pet.shape.gii
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_stat-std_desc-pvc_pet.json b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_stat-std_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_stat-std_desc-pvc_pet.shape.gii b/...-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_stat-std_desc-pvc_pet.shape.gii
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_seg-nopvc_dseg.nii.gz b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_seg-nopvc_dseg.nii.gz
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_seg-pvc_dseg.nii.gz b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_seg-pvc_dseg.nii.gz
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_stat-std_desc-nopvc_pet.json b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_stat-std_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_stat-std_desc-nopvc_pet.nii.gz b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_stat-std_desc-nopvc_pet.nii.gz
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_stat-std_desc-pvc_pet.json b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_stat-std_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_stat-std_desc-pvc_pet.nii.gz b/ps13-pipeline/tpl-fsaverage/pet/tpl-fsaverage_stat-std_desc-pvc_pet.nii.gz
diff --git a/ps13-study-template-rev/.SKIP_VALIDATION b/ps13-study-template-rev/.SKIP_VALIDATION
diff --git a/ps13-study-template-rev/atlas-ps13_description.json b/ps13-study-template-rev/atlas-ps13_description.json
@@ -0,0 +1,6 @@
+{
+  "AtlasName": "PS13 COX-1 PET atlas",
+  "AtlasSampleSize": 13,
+  "SpatialReference": "ps13",
+  "Description": "Study-specific template atlas"
+}
diff --git a/ps13-study-template-rev/atlas-ps13rev2034_description.json b/ps13-study-template-rev/atlas-ps13rev2034_description.json
@@ -0,0 +1,6 @@
+{
+  "AtlasName": "PS13 COX-1 PET atlas revision 2034",
+  "AtlasSampleSize": 13,
+  "SpatialReference": "ps13",
+  "Description": "Updated manual segmentation in study template"
+}
diff --git a/ps13-study-template-rev/dataset_description.json b/ps13-study-template-rev/dataset_description.json
@@ -0,0 +1,8 @@
+{
+  "Name": "PS13 study-specific template pipeline with revision",
+  "BIDSVersion": "1.10.0",
+  "DatasetType": "derivative",
+  "GeneratedBy": [
+    {"Name": "PS13 Pipeline", "Version": "2034"}
+  ]
+}
diff --git a/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_desc-nopvc_pet.json b/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "PET without PVC"}
diff --git a/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_desc-nopvc_pet.nii.gz b/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_desc-nopvc_pet.nii.gz
diff --git a/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_desc-pvc_pet.json b/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "PET with PVC"}
diff --git a/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_desc-pvc_pet.nii.gz b/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_desc-pvc_pet.nii.gz
diff --git a/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_dseg.json b/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_dseg.json
@@ -0,0 +1 @@
+{"Description": "Segmentation in MNI152Lin"}
diff --git a/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_dseg.tsv b/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_dseg.tsv
diff --git a/...te-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-1p5_desc-spmvbmNopvc_pet.json b/...te-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-1p5_desc-spmvbmNopvc_pet.json
diff --git a/...-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-1p5_desc-spmvbmNopvc_pet.nii.gz b/...-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-1p5_desc-spmvbmNopvc_pet.nii.gz
diff --git a/...late-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-1p5_desc-spmvbmPvc_pet.json b/...late-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-1p5_desc-spmvbmPvc_pet.json
diff --git a/...te-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-1p5_desc-spmvbmPvc_pet.nii.gz b/...te-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-1p5_desc-spmvbmPvc_pet.nii.gz
diff --git a/...l-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-1p5_stat-std_desc-spmvbmNopvc_pet.json b/...l-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-1p5_stat-std_desc-spmvbmNopvc_pet.json
diff --git a/...ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-1p5_stat-std_desc-spmvbmNopvc_pet.nii.gz b/...ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-1p5_stat-std_desc-spmvbmNopvc_pet.nii.gz
diff --git a/...tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-1p5_stat-std_desc-spmvbmPvc_pet.json b/...tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-1p5_stat-std_desc-spmvbmPvc_pet.json
diff --git a/...l-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-1p5_stat-std_desc-spmvbmPvc_pet.nii.gz b/...l-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-1p5_stat-std_desc-spmvbmPvc_pet.nii.gz
diff --git a/...plate-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_desc-fnirtNopvc_pet.json b/...plate-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_desc-fnirtNopvc_pet.json
diff --git a/...ate-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_desc-fnirtNopvc_pet.nii.gz b/...ate-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_desc-fnirtNopvc_pet.nii.gz
diff --git a/...emplate-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_desc-fnirtPvc_pet.json b/...emplate-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_desc-fnirtPvc_pet.json
diff --git a/...plate-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_desc-fnirtPvc_pet.nii.gz b/...plate-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_desc-fnirtPvc_pet.nii.gz
diff --git a/...y-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_desc-nopvc_pet.json b/...y-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_desc-nopvc_pet.json
diff --git a/...template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_desc-nopvc_pet.nii.gz b/...template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_desc-nopvc_pet.nii.gz
diff --git a/...udy-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_desc-pvc_pet.json b/...udy-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_desc-pvc_pet.json
diff --git a/...y-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_desc-pvc_pet.nii.gz b/...y-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_desc-pvc_pet.nii.gz
diff --git a/.../tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_stat-std_desc-fnirtNopvc_pet.json b/.../tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_stat-std_desc-fnirtNopvc_pet.json
diff --git a/...pl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_stat-std_desc-fnirtNopvc_pet.nii.gz b/...pl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_stat-std_desc-fnirtNopvc_pet.nii.gz
diff --git a/...ev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_stat-std_desc-fnirtPvc_pet.json b/...ev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_stat-std_desc-fnirtPvc_pet.json
diff --git a/.../tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_stat-std_desc-fnirtPvc_pet.nii.gz b/.../tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_stat-std_desc-fnirtPvc_pet.nii.gz
diff --git a/...e-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_stat-std_desc-nopvc_pet.json b/...e-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_stat-std_desc-nopvc_pet.json
diff --git a/...rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_stat-std_desc-nopvc_pet.nii.gz b/...rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_stat-std_desc-nopvc_pet.nii.gz
diff --git a/...ate-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_stat-std_desc-pvc_pet.json b/...ate-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_stat-std_desc-pvc_pet.json
diff --git a/...e-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_stat-std_desc-pvc_pet.nii.gz b/...e-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_res-2_stat-std_desc-pvc_pet.nii.gz
diff --git a/...study-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_seg-nopvc_dseg.nii.gz b/...study-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_seg-nopvc_dseg.nii.gz
diff --git a/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_seg-pvc_dseg.nii.gz b/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13_seg-pvc_dseg.nii.gz
diff --git a/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13rev2034_dseg.json b/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13rev2034_dseg.json
@@ -0,0 +1 @@
+{"Description": "Segmentation in MNI152Lin"}
diff --git a/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13rev2034_dseg.tsv b/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13rev2034_dseg.tsv
diff --git a/...emplate-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13rev2034_seg-nopvc_dseg.nii.gz b/...emplate-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13rev2034_seg-nopvc_dseg.nii.gz
diff --git a/...-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13rev2034_seg-pvc_dseg.nii.gz b/...-template-rev/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_atlas-ps13rev2034_seg-pvc_dseg.nii.gz
diff --git a/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_desc-nopvc_pet.json b/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "fsaverage space PET without PVC"}
diff --git a/...study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_desc-nopvc_pet.nii.gz b/...study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_desc-nopvc_pet.nii.gz
diff --git a/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_desc-pvc_pet.json b/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "fsaverage space PET with PVC"}
diff --git a/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_desc-pvc_pet.nii.gz b/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_desc-pvc_pet.nii.gz
diff --git a/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_dseg.json b/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_dseg.json
@@ -0,0 +1 @@
+{"Description": "Segmentation labels"}
diff --git a/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_dseg.tsv b/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_dseg.tsv
diff --git a/...-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-L_den-164k_desc-nopvc_pet.json b/...-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-L_den-164k_desc-nopvc_pet.json
diff --git a/...tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-L_den-164k_desc-nopvc_pet.shape.gii b/...tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-L_den-164k_desc-nopvc_pet.shape.gii
diff --git a/...te-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-L_den-164k_desc-pvc_pet.json b/...te-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-L_den-164k_desc-pvc_pet.json
diff --git a/...v/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-L_den-164k_desc-pvc_pet.shape.gii b/...v/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-L_den-164k_desc-pvc_pet.shape.gii
diff --git a/...ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-L_den-164k_stat-std_desc-nopvc_pet.json b/...ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-L_den-164k_stat-std_desc-nopvc_pet.json
diff --git a/...pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-L_den-164k_stat-std_desc-nopvc_pet.shape.gii b/...pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-L_den-164k_stat-std_desc-nopvc_pet.shape.gii
diff --git a/...l-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-L_den-164k_stat-std_desc-pvc_pet.json b/...l-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-L_den-164k_stat-std_desc-pvc_pet.json
diff --git a/...3/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-L_den-164k_stat-std_desc-pvc_pet.shape.gii b/...3/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-L_den-164k_stat-std_desc-pvc_pet.shape.gii
diff --git a/...-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-R_den-164k_desc-nopvc_pet.json b/...-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-R_den-164k_desc-nopvc_pet.json
diff --git a/...tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-R_den-164k_desc-nopvc_pet.shape.gii b/...tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-R_den-164k_desc-nopvc_pet.shape.gii
diff --git a/...te-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-R_den-164k_desc-pvc_pet.json b/...te-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-R_den-164k_desc-pvc_pet.json
diff --git a/...v/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-R_den-164k_desc-pvc_pet.shape.gii b/...v/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-R_den-164k_desc-pvc_pet.shape.gii
diff --git a/...ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-R_den-164k_stat-std_desc-nopvc_pet.json b/...ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-R_den-164k_stat-std_desc-nopvc_pet.json
diff --git a/...pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-R_den-164k_stat-std_desc-nopvc_pet.shape.gii b/...pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-R_den-164k_stat-std_desc-nopvc_pet.shape.gii
diff --git a/...l-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-R_den-164k_stat-std_desc-pvc_pet.json b/...l-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-R_den-164k_stat-std_desc-pvc_pet.json
diff --git a/...3/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-R_den-164k_stat-std_desc-pvc_pet.shape.gii b/...3/pet/tpl-ps13_space-fsaverage_atlas-ps13_hemi-R_den-164k_stat-std_desc-pvc_pet.shape.gii
diff --git a/...study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_seg-nopvc_dseg.nii.gz b/...study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_seg-nopvc_dseg.nii.gz
diff --git a/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_seg-pvc_dseg.nii.gz b/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_seg-pvc_dseg.nii.gz
diff --git a/...emplate-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_stat-std_desc-nopvc_pet.json b/...emplate-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_stat-std_desc-nopvc_pet.json
diff --git a/...plate-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_stat-std_desc-nopvc_pet.nii.gz b/...plate-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_stat-std_desc-nopvc_pet.nii.gz
diff --git a/...-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_stat-std_desc-pvc_pet.json b/...-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_stat-std_desc-pvc_pet.json
diff --git a/...emplate-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_stat-std_desc-pvc_pet.nii.gz b/...emplate-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13_stat-std_desc-pvc_pet.nii.gz
diff --git a/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13rev2034_dseg.json b/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13rev2034_dseg.json
@@ -0,0 +1 @@
+{"Description": "Segmentation labels"}
diff --git a/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13rev2034_dseg.tsv b/ps13-study-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13rev2034_dseg.tsv
diff --git a/...emplate-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13rev2034_seg-nopvc_dseg.nii.gz b/...emplate-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13rev2034_seg-nopvc_dseg.nii.gz
diff --git a/...-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13rev2034_seg-pvc_dseg.nii.gz b/...-template-rev/tpl-ps13/pet/tpl-ps13_space-fsaverage_atlas-ps13rev2034_seg-pvc_dseg.nii.gz
diff --git a/ps13-study-template/.SKIP_VALIDATION b/ps13-study-template/.SKIP_VALIDATION
diff --git a/ps13-study-template/atlas-ps13_description.json b/ps13-study-template/atlas-ps13_description.json
@@ -0,0 +1,6 @@
+{
+  "AtlasName": "PS13 COX-1 PET atlas",
+  "AtlasSampleSize": 13,
+  "SpatialReference": "ps13",
+  "Description": "Study-specific template atlas"
+}
diff --git a/ps13-study-template/dataset_description.json b/ps13-study-template/dataset_description.json
@@ -0,0 +1,8 @@
+{
+  "Name": "PS13 study-specific template pipeline",
+  "BIDSVersion": "1.10.0",
+  "DatasetType": "derivative",
+  "GeneratedBy": [
+    {"Name": "PS13 Pipeline", "Version": "1.0"}
+  ]
+}
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_desc-nopvc_pet.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "PET without PVC"}
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_desc-nopvc_pet.nii.gz b/ps13-study-template/tpl-ps13/pet/tpl-ps13_desc-nopvc_pet.nii.gz
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_desc-pvc_pet.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "PET with PVC"}
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_desc-pvc_pet.nii.gz b/ps13-study-template/tpl-ps13/pet/tpl-ps13_desc-pvc_pet.nii.gz
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_dseg.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_dseg.json
@@ -0,0 +1 @@
+{"Description": "Segmentation in MNI152Lin"}
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_dseg.tsv b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_dseg.tsv
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-1p5_desc-spmvbmNopvc_pet.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-1p5_desc-spmvbmNopvc_pet.json
diff --git a/...-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-1p5_desc-spmvbmNopvc_pet.nii.gz b/...-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-1p5_desc-spmvbmNopvc_pet.nii.gz
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-1p5_desc-spmvbmPvc_pet.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-1p5_desc-spmvbmPvc_pet.json
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-1p5_desc-spmvbmPvc_pet.nii.gz b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-1p5_desc-spmvbmPvc_pet.nii.gz
diff --git a/...template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-1p5_stat-std_desc-spmvbmNopvc_pet.json b/...template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-1p5_stat-std_desc-spmvbmNopvc_pet.json
diff --git a/...mplate/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-1p5_stat-std_desc-spmvbmNopvc_pet.nii.gz b/...mplate/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-1p5_stat-std_desc-spmvbmNopvc_pet.nii.gz
diff --git a/...y-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-1p5_stat-std_desc-spmvbmPvc_pet.json b/...y-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-1p5_stat-std_desc-spmvbmPvc_pet.json
diff --git a/...template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-1p5_stat-std_desc-spmvbmPvc_pet.nii.gz b/...template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-1p5_stat-std_desc-spmvbmPvc_pet.nii.gz
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_desc-fnirtNopvc_pet.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_desc-fnirtNopvc_pet.json
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_desc-fnirtNopvc_pet.nii.gz b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_desc-fnirtNopvc_pet.nii.gz
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_desc-fnirtPvc_pet.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_desc-fnirtPvc_pet.json
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_desc-fnirtPvc_pet.nii.gz b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_desc-fnirtPvc_pet.nii.gz
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_desc-nopvc_pet.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_desc-nopvc_pet.json
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_desc-nopvc_pet.nii.gz b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_desc-nopvc_pet.nii.gz
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_desc-pvc_pet.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_desc-pvc_pet.json
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_desc-pvc_pet.nii.gz b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_desc-pvc_pet.nii.gz
diff --git a/...dy-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_stat-std_desc-fnirtNopvc_pet.json b/...dy-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_stat-std_desc-fnirtNopvc_pet.json
diff --git a/...-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_stat-std_desc-fnirtNopvc_pet.nii.gz b/...-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_stat-std_desc-fnirtNopvc_pet.nii.gz
diff --git a/...tudy-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_stat-std_desc-fnirtPvc_pet.json b/...tudy-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_stat-std_desc-fnirtPvc_pet.json
diff --git a/...dy-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_stat-std_desc-fnirtPvc_pet.nii.gz b/...dy-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_stat-std_desc-fnirtPvc_pet.nii.gz
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_stat-std_desc-nopvc_pet.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_stat-std_desc-nopvc_pet.json
diff --git a/...study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_stat-std_desc-nopvc_pet.nii.gz b/...study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_stat-std_desc-nopvc_pet.nii.gz
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_stat-std_desc-pvc_pet.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_stat-std_desc-pvc_pet.json
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_stat-std_desc-pvc_pet.nii.gz b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_res-2_stat-std_desc-pvc_pet.nii.gz
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_seg-nopvc_dseg.nii.gz b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_seg-nopvc_dseg.nii.gz
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_seg-pvc_dseg.nii.gz b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-MNI152Lin_seg-pvc_dseg.nii.gz
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_desc-nopvc_pet.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "fsaverage space PET without PVC"}
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_desc-nopvc_pet.nii.gz b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_desc-nopvc_pet.nii.gz
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_desc-pvc_pet.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "fsaverage space PET with PVC"}
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_desc-pvc_pet.nii.gz b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_desc-pvc_pet.nii.gz
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_dseg.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_dseg.json
@@ -0,0 +1 @@
+{"Description": "Segmentation labels"}
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_dseg.tsv b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_dseg.tsv
diff --git a/...-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-L_den-164k_desc-nopvc_pet.json b/...-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-L_den-164k_desc-nopvc_pet.json
diff --git a/...y-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-L_den-164k_desc-nopvc_pet.shape.gii b/...y-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-L_den-164k_desc-nopvc_pet.shape.gii
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-L_den-164k_desc-pvc_pet.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-L_den-164k_desc-pvc_pet.json
diff --git a/...udy-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-L_den-164k_desc-pvc_pet.shape.gii b/...udy-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-L_den-164k_desc-pvc_pet.shape.gii
diff --git a/...mplate/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-L_den-164k_stat-std_desc-nopvc_pet.json b/...mplate/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-L_den-164k_stat-std_desc-nopvc_pet.json
diff --git a/...e/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-L_den-164k_stat-std_desc-nopvc_pet.shape.gii b/...e/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-L_den-164k_stat-std_desc-nopvc_pet.shape.gii
diff --git a/...template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-L_den-164k_stat-std_desc-pvc_pet.json b/...template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-L_den-164k_stat-std_desc-pvc_pet.json
diff --git a/...ate/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-L_den-164k_stat-std_desc-pvc_pet.shape.gii b/...ate/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-L_den-164k_stat-std_desc-pvc_pet.shape.gii
diff --git a/...-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-R_den-164k_desc-nopvc_pet.json b/...-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-R_den-164k_desc-nopvc_pet.json
diff --git a/...y-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-R_den-164k_desc-nopvc_pet.shape.gii b/...y-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-R_den-164k_desc-nopvc_pet.shape.gii
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-R_den-164k_desc-pvc_pet.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-R_den-164k_desc-pvc_pet.json
diff --git a/...udy-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-R_den-164k_desc-pvc_pet.shape.gii b/...udy-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-R_den-164k_desc-pvc_pet.shape.gii
diff --git a/...mplate/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-R_den-164k_stat-std_desc-nopvc_pet.json b/...mplate/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-R_den-164k_stat-std_desc-nopvc_pet.json
diff --git a/...e/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-R_den-164k_stat-std_desc-nopvc_pet.shape.gii b/...e/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-R_den-164k_stat-std_desc-nopvc_pet.shape.gii
diff --git a/...template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-R_den-164k_stat-std_desc-pvc_pet.json b/...template/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-R_den-164k_stat-std_desc-pvc_pet.json
diff --git a/...ate/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-R_den-164k_stat-std_desc-pvc_pet.shape.gii b/...ate/tpl-ps13/pet/tpl-ps13_space-fsaverage_hemi-R_den-164k_stat-std_desc-pvc_pet.shape.gii
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_seg-nopvc_dseg.nii.gz b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_seg-nopvc_dseg.nii.gz
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_seg-pvc_dseg.nii.gz b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_seg-pvc_dseg.nii.gz
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_stat-std_desc-nopvc_pet.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_stat-std_desc-nopvc_pet.json
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_stat-std_desc-nopvc_pet.nii.gz b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_stat-std_desc-nopvc_pet.nii.gz
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_stat-std_desc-pvc_pet.json b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_stat-std_desc-pvc_pet.json
diff --git a/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_stat-std_desc-pvc_pet.nii.gz b/ps13-study-template/tpl-ps13/pet/tpl-ps13_space-fsaverage_stat-std_desc-pvc_pet.nii.gz
diff --git a/ps13rev2034-pipeline/.SKIP_VALIDATION b/ps13rev2034-pipeline/.SKIP_VALIDATION
diff --git a/ps13rev2034-pipeline/atlas-ps13_description.json b/ps13rev2034-pipeline/atlas-ps13_description.json
@@ -0,0 +1,6 @@
+{
+  "AtlasName": "PS13 COX-1 PET atlas",
+  "AtlasSampleSize": 13,
+  "SpatialReference": "MNI152Lin",
+  "Description": "Example atlas generated from PS13 PET data"
+}
diff --git a/ps13rev2034-pipeline/dataset_description.json b/ps13rev2034-pipeline/dataset_description.json
@@ -0,0 +1,11 @@
+{
+  "Name": "PS13 pipeline revision 2034 example",
+  "BIDSVersion": "1.10.0",
+  "DatasetType": "derivative",
+  "GeneratedBy": [
+    {
+      "Name": "PS13 Pipeline",
+      "Version": "2034"
+    }
+  ]
+}
diff --git a/ps13rev2034-pipeline/tpl-MNI152Lin/pet/atlas-ps13rev2034_description.json b/ps13rev2034-pipeline/tpl-MNI152Lin/pet/atlas-ps13rev2034_description.json
@@ -0,0 +1,6 @@
+{
+  "AtlasName": "PS13 COX-1 PET atlas revision 2034",
+  "AtlasSampleSize": 13,
+  "SpatialReference": "MNI152Lin",
+  "Description": "Updated manual segmentation with new regions"
+}
diff --git a/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_dseg.json b/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_dseg.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_dseg.tsv b/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_dseg.tsv
diff --git a/...034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-1p5_desc-spmvbmNopvc_pet.json b/...034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-1p5_desc-spmvbmNopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...4-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-1p5_desc-spmvbmNopvc_pet.nii.gz b/...4-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-1p5_desc-spmvbmNopvc_pet.nii.gz
diff --git a/...v2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-1p5_desc-spmvbmPvc_pet.json b/...v2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-1p5_desc-spmvbmPvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-1p5_desc-spmvbmPvc_pet.nii.gz b/...034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-1p5_desc-spmvbmPvc_pet.nii.gz
diff --git a/...ine/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-1p5_stat-std_desc-spmvbmNopvc_pet.json b/...ine/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-1p5_stat-std_desc-spmvbmNopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...e/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-1p5_stat-std_desc-spmvbmNopvc_pet.nii.gz b/...e/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-1p5_stat-std_desc-spmvbmNopvc_pet.nii.gz
diff --git a/...eline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-1p5_stat-std_desc-spmvbmPvc_pet.json b/...eline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-1p5_stat-std_desc-spmvbmPvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...ine/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-1p5_stat-std_desc-spmvbmPvc_pet.nii.gz b/...ine/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-1p5_stat-std_desc-spmvbmPvc_pet.nii.gz
diff --git a/...ev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_desc-fnirtNopvc_pet.json b/...ev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_desc-fnirtNopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_desc-fnirtNopvc_pet.nii.gz b/...2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_desc-fnirtNopvc_pet.nii.gz
diff --git a/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_desc-fnirtPvc_pet.json b/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_desc-fnirtPvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...ev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_desc-fnirtPvc_pet.nii.gz b/...ev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_desc-fnirtPvc_pet.nii.gz
diff --git a/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_desc-nopvc_pet.json b/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_desc-nopvc_pet.nii.gz b/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_desc-nopvc_pet.nii.gz
diff --git a/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_desc-pvc_pet.json b/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_desc-pvc_pet.nii.gz b/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_desc-pvc_pet.nii.gz
diff --git a/...peline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_stat-std_desc-fnirtNopvc_pet.json b/...peline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_stat-std_desc-fnirtNopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...line/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_stat-std_desc-fnirtNopvc_pet.nii.gz b/...line/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_stat-std_desc-fnirtNopvc_pet.nii.gz
diff --git a/...pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_stat-std_desc-fnirtPvc_pet.json b/...pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_stat-std_desc-fnirtPvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...peline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_stat-std_desc-fnirtPvc_pet.nii.gz b/...peline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_stat-std_desc-fnirtPvc_pet.nii.gz
diff --git a/...34-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_stat-std_desc-nopvc_pet.json b/...34-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_stat-std_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_stat-std_desc-nopvc_pet.nii.gz b/...-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_stat-std_desc-nopvc_pet.nii.gz
diff --git a/...2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_stat-std_desc-pvc_pet.json b/...2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_stat-std_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...34-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_stat-std_desc-pvc_pet.nii.gz b/...34-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_res-2_stat-std_desc-pvc_pet.nii.gz
diff --git a/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_seg-nopvc_dseg.nii.gz b/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_seg-nopvc_dseg.nii.gz
diff --git a/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_seg-pvc_dseg.nii.gz b/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13_seg-pvc_dseg.nii.gz
diff --git a/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13rev2034_dseg.json b/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13rev2034_dseg.json
@@ -0,0 +1 @@
+{"Description": "Updated atlas segmentation"}
diff --git a/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13rev2034_dseg.tsv b/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13rev2034_dseg.tsv
diff --git a/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13rev2034_seg-nopvc_dseg.nii.gz b/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13rev2034_seg-nopvc_dseg.nii.gz
diff --git a/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13rev2034_seg-pvc_dseg.nii.gz b/ps13rev2034-pipeline/tpl-MNI152Lin/pet/tpl-MNI152Lin_atlas-ps13rev2034_seg-pvc_dseg.nii.gz
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_desc-nopvc_pet.json b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "fsaverage space PET without PVC"}
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_desc-nopvc_pet.nii.gz b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_desc-nopvc_pet.nii.gz
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_desc-pvc_pet.json b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_desc-pvc_pet.nii.gz b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_desc-pvc_pet.nii.gz
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_dseg.json b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_dseg.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_dseg.tsv b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_dseg.tsv
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_desc-nopvc_pet.json b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_desc-nopvc_pet.shape.gii b/...rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_desc-nopvc_pet.shape.gii
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_desc-pvc_pet.json b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_desc-pvc_pet.shape.gii b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_desc-pvc_pet.shape.gii
diff --git a/...034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_stat-std_desc-nopvc_pet.json b/...034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_stat-std_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...ipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_stat-std_desc-nopvc_pet.shape.gii b/...ipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_stat-std_desc-nopvc_pet.shape.gii
diff --git a/...v2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_stat-std_desc-pvc_pet.json b/...v2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_stat-std_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_stat-std_desc-pvc_pet.shape.gii b/...-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-L_den-164k_stat-std_desc-pvc_pet.shape.gii
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_desc-nopvc_pet.json b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_desc-nopvc_pet.shape.gii b/...rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_desc-nopvc_pet.shape.gii
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_desc-pvc_pet.json b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_desc-pvc_pet.shape.gii b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_desc-pvc_pet.shape.gii
diff --git a/...034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_stat-std_desc-nopvc_pet.json b/...034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_stat-std_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...ipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_stat-std_desc-nopvc_pet.shape.gii b/...ipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_stat-std_desc-nopvc_pet.shape.gii
diff --git a/...v2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_stat-std_desc-pvc_pet.json b/...v2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_stat-std_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/...-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_stat-std_desc-pvc_pet.shape.gii b/...-pipeline/tpl-fsaverage/pet/tpl-fsaverage_hemi-R_den-164k_stat-std_desc-pvc_pet.shape.gii
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_seg-nopvc_dseg.nii.gz b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_seg-nopvc_dseg.nii.gz
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_seg-pvc_dseg.nii.gz b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_seg-pvc_dseg.nii.gz
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_stat-std_desc-nopvc_pet.json b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_stat-std_desc-nopvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_stat-std_desc-nopvc_pet.nii.gz b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_stat-std_desc-nopvc_pet.nii.gz
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_stat-std_desc-pvc_pet.json b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_stat-std_desc-pvc_pet.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_stat-std_desc-pvc_pet.nii.gz b/ps13rev2034-pipeline/tpl-fsaverage/pet/tpl-fsaverage_stat-std_desc-pvc_pet.nii.gz
diff --git a/suit-pipeline/.SKIP_VALIDATION b/suit-pipeline/.SKIP_VALIDATION
diff --git a/suit-pipeline/dataset_description.json b/suit-pipeline/dataset_description.json
@@ -0,0 +1,8 @@
+{
+  "Name": "SUIT pipeline example",
+  "BIDSVersion": "1.10.0",
+  "DatasetType": "derivative",
+  "GeneratedBy": [
+    {"Name": "SUIT Pipeline", "Version": "1.0"}
+  ]
+}
diff --git a/suit-pipeline/tpl-SUIT/anat/atlas-Buckner2011_description.json b/suit-pipeline/tpl-SUIT/anat/atlas-Buckner2011_description.json
@@ -0,0 +1,10 @@
+{
+  "AtlasName": "SUIT Buckner2011 atlas",
+  "AtlasSampleSize": 1000,
+  "SpatialReference": "https://templateflow.s3.amazonaws.com/tpl-MNI152Lin_res-01_T1w.nii.gz",
+  "License": "LICENSE file",
+  "ReferencesAndLinks": [
+    "https://doi.org/10.1152/jn.00339.2011"
+  ],
+  "Species": "Human"
+}
diff --git a/suit-pipeline/tpl-SUIT/anat/atlas-Diedrichsen2009_description.json b/suit-pipeline/tpl-SUIT/anat/atlas-Diedrichsen2009_description.json
@@ -0,0 +1,10 @@
+{
+  "AtlasName": "SUIT Diedrichsen2009 atlas",
+  "AtlasSampleSize": 20,
+  "SpatialReference": "https://templateflow.s3.amazonaws.com/tpl-MNI152Lin_res-01_T1w.nii.gz",
+  "License": "LICENSE file",
+  "ReferencesAndLinks": [
+    "https://doi.org/10.1016/j.neuroimage.2009.01.045"
+  ],
+  "Species": "Human"
+}
diff --git a/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_T1w.nii.gz b/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_T1w.nii.gz
diff --git a/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_dseg.json b/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_dseg.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_seg-17n_dseg.label.gii b/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_seg-17n_dseg.label.gii
diff --git a/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_seg-17n_dseg.nii.gz b/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_seg-17n_dseg.nii.gz
diff --git a/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_seg-17n_dseg.tsv b/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_seg-17n_dseg.tsv
diff --git a/...-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_seg-17n_stat-confidence_probseg.nii.gz b/...-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_seg-17n_stat-confidence_probseg.nii.gz
diff --git a/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_seg-7n_dseg.label.gii b/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_seg-7n_dseg.label.gii
diff --git a/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_seg-7n_dseg.nii.gz b/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_seg-7n_dseg.nii.gz
diff --git a/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_seg-7n_dseg.tsv b/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_seg-7n_dseg.tsv
diff --git a/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_seg-7n_stat-confidence_probseg.nii.gz b/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Buckner2011_seg-7n_stat-confidence_probseg.nii.gz
diff --git a/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Diedrichsen2009_dseg.json b/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Diedrichsen2009_dseg.json
@@ -0,0 +1 @@
+{"Description": "Example metadata"}
diff --git a/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Diedrichsen2009_dseg.label.gii b/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Diedrichsen2009_dseg.label.gii
diff --git a/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Diedrichsen2009_dseg.nii.gz b/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Diedrichsen2009_dseg.nii.gz
diff --git a/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Diedrichsen2009_dseg.tsv b/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Diedrichsen2009_dseg.tsv
diff --git a/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Diedrichsen2009_probseg.nii.gz b/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_atlas-Diedrichsen2009_probseg.nii.gz
diff --git a/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_flat.surf.gii b/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_flat.surf.gii
diff --git a/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_sulc.shape.gii b/suit-pipeline/tpl-SUIT/anat/tpl-SUIT_sulc.shape.gii
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		{"Description": "fsaverage space PET without PVC"}