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TODO: everything but the kitchen sink #201

@Remi-Gau

Description

@Remi-Gau
  • The creation of one protocol should have a list of files as input that could be csv or jsonld.
    • If CSV then it creates an activity (or several) for that table.
    • If JOSNLD then it add it directly to the protocol.
  • Improve CLI
  • Improve make to facilitate download, creation and validation
  • Add some basic validations of the spreadshseets after download
  • Refactor tests
  • Add options to NOT write protocol files (can be useful when only a single activity is created)
  • Add "Others" only for select items
  • In spreadsheet change dropdown to select
  • [ ] use a yml or json file to centralize info about a protocol (input dir, outout dir, citation ...) using metatable instead

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