feature request - channels name

[romainGuiet]

Hi @joshmoore , Hi @will-moore ,

I just realized that the channels name are "lost" / not displaying :

Opening the same ome-ngff on QuPath, channels names are automatically displayed. I would be great if the layers names would correspond to the channels names.

Cheers,

Romain

PS : Kudos for the performance ! the image is loading crazy fast 🤯🤩 !

[will-moore]

@romainGuiet Apologies for dropping this.

Do you have channel names specified in the omero metadata, or are you looking for other names to be used (sorry, I'm not familiar with QuPath's behaviour).

We should display omero.channels.label, e.g.

napari --plugin napari-ome-zarr https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0062A/6001240.zarr

[romainGuiet]

Hi @will-moore ,

comet image

I converted an ome.tiff (from the Comet microscope) to an ome-ngff using the ngff.converter (2.0.2).

The file is on my local hard drive, and when I drag and drop on :

• QuPath I get :

• napari I get :

Test dataset

I can confirm that using your command, I get the following results :

The ome.ngff is also on our s3, but I get the same behaviour:

OMERO

We should display omero.channels.label, e.g.

the original ome.tif image is also on our omero-public , so I checked and I could see these channel names

napari-omero

I tried to load the image in napari using napari-omero but it fails with the error :

---------------------------------------------------------------------------
ValueError                                Traceback (most recent call last)
File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari_omero\widgets\main.py:194, in OMEROWidget._on_tree_selection(self=<napari_omero.widgets.main.OMEROWidget object>, selected=<PyQt5.QtCore.QItemSelection object>, deselected=<PyQt5.QtCore.QItemSelection object>)
    192 if item.isImage():
    193     QCoreApplication.processEvents()
--> 194     self.load_image(item.wrapper)
        item = <napari_omero.widgets.tree_model.OMEROTreeItem object at 0x0000010BDD414700>
        item.wrapper = <_ImageWrapper id=666457>
        self = <napari_omero.widgets.main.OMEROWidget object at 0x0000010BD74A78B0>

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari_omero\widgets\main.py:202, in OMEROWidget.load_image(self=<napari_omero.widgets.main.OMEROWidget object>, wrapper=<_ImageWrapper id=666457>)
    200 type_ = wrapper.__class__.__name__[1:-7]
    201 id_ = wrapper.getId()
--> 202 self.viewer.open(f"omero://{type_}:{id_}", plugin="napari-omero")
        self = <napari_omero.widgets.main.OMEROWidget object at 0x0000010BD74A78B0>

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari\components\viewer_model.py:1228, in ViewerModel.open(self=Viewer(camera=Camera(center=(0.0, 0.0, 0.0), zoo...use_drag_gen={}, _mouse_wheel_gen={}, _keymap={}), path='omero://Image:666457', stack=False, plugin='napari-omero', layer_type=None, **kwargs={})
   1225 _path = [_path] if not isinstance(_path, list) else _path
   1226 if plugin:
   1227     added.extend(
-> 1228         self._add_layers_with_plugins(
        added = []
        self = Viewer(camera=Camera(center=(0.0, 0.0, 0.0), zoom=1.0, angles=(0.0, 0.0, 90.0), perspective=0.0, mouse_pan=True, mouse_zoom=True), cursor=Cursor(position=(1.0, 1.0), scaled=True, style=<CursorStyle.STANDARD: 'standard'>, size=1.0), dims=Dims(ndim=2, ndisplay=2, order=(0, 1), axis_labels=('0', '1'), rollable=(True, True), range=(RangeTuple(start=0.0, stop=2.0, step=1.0), RangeTuple(start=0.0, stop=2.0, step=1.0)), margin_left=(0.0, 0.0), margin_right=(0.0, 0.0), point=(0.0, 0.0), last_used=0), grid=GridCanvas(stride=1, shape=(-1, -1), enabled=False), layers=[], help='', status='', tooltip=Tooltip(visible=False, text=''), theme='dark', title='napari', mouse_over_canvas=False, mouse_move_callbacks=[], mouse_drag_callbacks=[], mouse_double_click_callbacks=[<function double_click_to_zoom at 0x0000010BC8C52A60>], mouse_wheel_callbacks=[<function dims_scroll at 0x0000010BC8C520D0>], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, _keymap={})
        _path = ['omero://Image:666457']
        kwargs = {}
        plugin = 'napari-omero'
        layer_type = None
        _stack = False
   1229             _path,
   1230             kwargs=kwargs,
   1231             plugin=plugin,
   1232             layer_type=layer_type,
   1233             stack=_stack,
   1234         )
   1235     )
   1236 # no plugin choice was made
   1237 else:
   1238     layers = self._open_or_raise_error(
   1239         _path, kwargs, layer_type, _stack
   1240     )

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari\components\viewer_model.py:1461, in ViewerModel._add_layers_with_plugins(self=Viewer(camera=Camera(center=(0.0, 0.0, 0.0), zoo...use_drag_gen={}, _mouse_wheel_gen={}, _keymap={}), paths=['omero://Image:666457'], stack=False, kwargs={}, plugin='napari-omero', layer_type=None)
   1457         _data = _unify_data_and_user_kwargs(
   1458             data, kwargs, layer_type, fallback_name=basename
   1459         )
   1460         with layer_source(path=filename, reader_plugin=plugin):
-> 1461             current_added = self._add_layer_from_data(*_data)
        _data = ([dask.array<stack, shape=(1, 28, 1, 44643, 44643), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 22321, 22321), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 11160, 11160), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 5580, 5580), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 2790, 2790), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 1395, 1395), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 697, 697), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 348, 348), dtype=uint16, chunksize=(1, 1, 1, 348, 348), chunktype=numpy.ndarray>], {'channel_axis': 1, 'colormap': [Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.74118, 1.     , 1.     ]], dtype=float32), name='#00bdff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.91765, 0.     , 1.     ]], dtype=float32), name='#ffea00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.58431, 0.     , 1.     , 1.     ]], dtype=float32), name='#9500ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 1.     , 0.23922, 1.     ]], dtype=float32), name='#00ff3d', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.     , 0.09412, 1.     ]], dtype=float32), name='#ff0018', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.43529, 1.     , 1.     ]], dtype=float32), name='#006fff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.77647, 1.     , 0.     , 1.     ]], dtype=float32), name='#c6ff00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.88627, 0.     , 1.     , 1.     ]], dtype=float32), name='#e200ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.    , 0.    , 0.    , 1.    ],
            [0.    , 1.    , 0.5451, 1.    ]], dtype=float32), name='#00ff8b', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.20392, 0.     , 1.     ]], dtype=float32), name='#ff3400', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.12941, 1.     , 1.     ]], dtype=float32), name='#0021ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.47059, 1.     , 0.     , 1.     ]], dtype=float32), name='#78ff00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.     , 0.80784, 1.     ]], dtype=float32), name='#ff00ce', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 1.     , 0.85098, 1.     ]], dtype=float32), name='#00ffd9', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.    , 0.    , 0.    , 1.    ],
            [1.    , 0.5098, 0.    , 1.    ]], dtype=float32), name='#ff8200', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.17647, 0.     , 1.     , 1.     ]], dtype=float32), name='#2d00ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.16863, 1.     , 0.     , 1.     ]], dtype=float32), name='#2bff00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.     , 0.50196, 1.     ]], dtype=float32), name='#ff0080', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.84314, 1.     , 1.     ]], dtype=float32), name='#00d7ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.81569, 0.     , 1.     ]], dtype=float32), name='#ffd000', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.48235, 0.     , 1.     , 1.     ]], dtype=float32), name='#7b00ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 1.     , 0.13725, 1.     ]], dtype=float32), name='#00ff23', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.     , 0.19608, 1.     ]], dtype=float32), name='#ff0032', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.53725, 1.     , 1.     ]], dtype=float32), name='#0089ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.87843, 1.     , 0.     , 1.     ]], dtype=float32), name='#e0ff00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.78431, 0.     , 1.     , 1.     ]], dtype=float32), name='#c800ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 1.     , 0.44314, 1.     ]], dtype=float32), name='#00ff71', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.10196, 0.     , 1.     ]], dtype=float32), name='#ff1a00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32))], 'contrast_limits': [[0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0]], 'name': ['666457: DAPI', '666457: AUTO TRITC', '666457: AUTO Cy5', '666457: rb Vimentin TRITC', '666457: rat FoxP3 Cy5', '666457: El1 TRITC', '666457: El1 Cy5', '666457: rat B220 TRITC', '666457: rb Ki67 Cy5', '666457: El2 TRITC', '666457: El2 Cy5', '666457: rb CD3e Cy5', '666457: El3 TRITC', '666457: El3 Cy5', '666457: g VE-cadherin Cy5', '666457: El4 TRITC', '666457: El4 Cy5', '666457: rat Ly6G Cy5', '666457: El5 TRITC', '666457: El5 Cy5', '666457: rb Pan CK TRITC', '666457: rat CD8a Cy5', '666457: El6 TRITC', '666457: El6 Cy5', '666457: F4_80 TRITC', '666457: rat CD4 Cy5', '666457: El7 TRITC', '666457: El7 Cy5'], 'visible': [True, True, True, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False], 'scale': [1, 1, 0.28, 0.28], 'metadata': {'omero': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Image', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'AcquisitionDate': 1731088895000, 'Name': '20241108_180135_2_lP638a_d241105_FFPE_Ms_TMA_11plex_updated_Ms_TMA_Comet_updated.tiff', 'omero:series': 0, 'omero:format': {'@type': 'TBD#Format', '@id': 162, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'OMETiff'}, 'Pixels': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Pixels', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'PhysicalSizeX': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'PhysicalSizeY': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'omero:sha1': 'Pending...', 'SignificantBits': 12, 'SizeX': 44643, 'SizeY': 44643, 'SizeZ': 1, 'SizeC': 28, 'SizeT': 1, 'Type': {'@type': 'TBD#PixelsType', '@id': 6, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'uint16'}}}}, 'axis_labels': ('t', 'z', 'y', 'x')}, 'image')
        self = Viewer(camera=Camera(center=(0.0, 0.0, 0.0), zoom=1.0, angles=(0.0, 0.0, 90.0), perspective=0.0, mouse_pan=True, mouse_zoom=True), cursor=Cursor(position=(1.0, 1.0), scaled=True, style=<CursorStyle.STANDARD: 'standard'>, size=1.0), dims=Dims(ndim=2, ndisplay=2, order=(0, 1), axis_labels=('0', '1'), rollable=(True, True), range=(RangeTuple(start=0.0, stop=2.0, step=1.0), RangeTuple(start=0.0, stop=2.0, step=1.0)), margin_left=(0.0, 0.0), margin_right=(0.0, 0.0), point=(0.0, 0.0), last_used=0), grid=GridCanvas(stride=1, shape=(-1, -1), enabled=False), layers=[], help='', status='', tooltip=Tooltip(visible=False, text=''), theme='dark', title='napari', mouse_over_canvas=False, mouse_move_callbacks=[], mouse_drag_callbacks=[], mouse_double_click_callbacks=[<function double_click_to_zoom at 0x0000010BC8C52A60>], mouse_wheel_callbacks=[<function dims_scroll at 0x0000010BC8C520D0>], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, _keymap={})
   1462     added.extend(current_added)
   1463 return added

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari\components\viewer_model.py:1535, in ViewerModel._add_layer_from_data(self=Viewer(camera=Camera(center=(0.0, 0.0, 0.0), zoo...use_drag_gen={}, _mouse_wheel_gen={}, _keymap={}), data=[dask.array<stack, shape=(1, 28, 1, 44643, 44643)...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 22321, 22321)...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 11160, 11160)...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 5580, 5580), ...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 2790, 2790), ...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 1395, 1395), ...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 697, 697), dt...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 348, 348), dt...ize=(1, 1, 1, 348, 348), chunktype=numpy.ndarray>], meta={'axis_labels': ('t', 'z', 'y', 'x'), 'channel_axis': 1, 'colormap': [Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.    , 0.    , 0. ...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.    , 0.    , 0. ...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), ...], 'contrast_limits': [[0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], ...], 'metadata': {'omero': {'@id': 666457, '@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Image', 'AcquisitionDate': 1731088895000, 'Name': '20241108_180135_2_lP638a_d241105_FFPE_Ms_TMA_11plex_updated_Ms_TMA_Comet_updated.tiff', 'Pixels': {'@id': 666457, '@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Pixels', 'PhysicalSizeX': {'@type': 'TBD#LengthI', 'Symbol': 'µm', 'Unit': 'MICROMETER', 'Value': 0.28}, 'PhysicalSizeY': {'@type': 'TBD#LengthI', 'Symbol': 'µm', 'Unit': 'MICROMETER', 'Value': 0.28}, 'SignificantBits': 12, 'SizeC': 28, 'SizeT': 1, 'SizeX': 44643, 'SizeY': 44643, 'SizeZ': 1, ...}, 'omero:details': {'@type': 'TBD#Details', 'group': {'@id': 261, '@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', 'Name': 'BIOP Public', 'omero:details': {'@type': 'TBD#Details', 'permissions': {...}}}, 'owner': {'@id': 502, '@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter'}, 'permissions': {'@type': 'TBD#Permissions', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isGroupAnnotate': False, 'isGroupRead': True, 'isGroupWrite': False, 'isUserRead': True, 'isUserWrite': True, ...}}, 'omero:format': {'@id': 162, '@type': 'TBD#Format', 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isGroupAnnotate': False, 'isGroupRead': True, 'isGroupWrite': False, 'isUserRead': True, 'isUserWrite': True, ...}}, 'value': 'OMETiff'}, 'omero:series': 0}}, 'name': ['666457: DAPI', '666457: AUTO TRITC', '666457: AUTO Cy5', '666457: rb Vimentin TRITC', '666457: rat FoxP3 Cy5', '666457: El1 TRITC', '666457: El1 Cy5', '666457: rat B220 TRITC', '666457: rb Ki67 Cy5', '666457: El2 TRITC', '666457: El2 Cy5', '666457: rb CD3e Cy5', '666457: El3 TRITC', '666457: El3 Cy5', '666457: g VE-cadherin Cy5', '666457: El4 TRITC', '666457: El4 Cy5', '666457: rat Ly6G Cy5', '666457: El5 TRITC', '666457: El5 Cy5', ...], 'scale': [1, 1, 0.28, 0.28], 'visible': [True, True, True, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, ...]}, layer_type='image')
   1533 try:
   1534     add_method = getattr(self, 'add_' + layer_type)
-> 1535     layer = add_method(data, **(meta or {}))
        add_method = <bound method ViewerModel.add_image of Viewer(camera=Camera(center=(0.0, 0.0, 0.0), zoom=1.0, angles=(0.0, 0.0, 90.0), perspective=0.0, mouse_pan=True, mouse_zoom=True), cursor=Cursor(position=(1.0, 1.0), scaled=True, style=<CursorStyle.STANDARD: 'standard'>, size=1.0), dims=Dims(ndim=2, ndisplay=2, order=(0, 1), axis_labels=('0', '1'), rollable=(True, True), range=(RangeTuple(start=0.0, stop=2.0, step=1.0), RangeTuple(start=0.0, stop=2.0, step=1.0)), margin_left=(0.0, 0.0), margin_right=(0.0, 0.0), point=(0.0, 0.0), last_used=0), grid=GridCanvas(stride=1, shape=(-1, -1), enabled=False), layers=[], help='', status='', tooltip=Tooltip(visible=False, text=''), theme='dark', title='napari', mouse_over_canvas=False, mouse_move_callbacks=[], mouse_drag_callbacks=[], mouse_double_click_callbacks=[<function double_click_to_zoom at 0x0000010BC8C52A60>], mouse_wheel_callbacks=[<function dims_scroll at 0x0000010BC8C520D0>], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, _keymap={})>
        data = [dask.array<stack, shape=(1, 28, 1, 44643, 44643), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 22321, 22321), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 11160, 11160), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 5580, 5580), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 2790, 2790), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 1395, 1395), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 697, 697), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 348, 348), dtype=uint16, chunksize=(1, 1, 1, 348, 348), chunktype=numpy.ndarray>]
        meta or {} = {'channel_axis': 1, 'colormap': [Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.74118, 1.     , 1.     ]], dtype=float32), name='#00bdff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.91765, 0.     , 1.     ]], dtype=float32), name='#ffea00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.58431, 0.     , 1.     , 1.     ]], dtype=float32), name='#9500ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 1.     , 0.23922, 1.     ]], dtype=float32), name='#00ff3d', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.     , 0.09412, 1.     ]], dtype=float32), name='#ff0018', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.43529, 1.     , 1.     ]], dtype=float32), name='#006fff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.77647, 1.     , 0.     , 1.     ]], dtype=float32), name='#c6ff00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.88627, 0.     , 1.     , 1.     ]], dtype=float32), name='#e200ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.    , 0.    , 0.    , 1.    ],
            [0.    , 1.    , 0.5451, 1.    ]], dtype=float32), name='#00ff8b', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.20392, 0.     , 1.     ]], dtype=float32), name='#ff3400', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.12941, 1.     , 1.     ]], dtype=float32), name='#0021ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.47059, 1.     , 0.     , 1.     ]], dtype=float32), name='#78ff00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.     , 0.80784, 1.     ]], dtype=float32), name='#ff00ce', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 1.     , 0.85098, 1.     ]], dtype=float32), name='#00ffd9', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.    , 0.    , 0.    , 1.    ],
            [1.    , 0.5098, 0.    , 1.    ]], dtype=float32), name='#ff8200', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.17647, 0.     , 1.     , 1.     ]], dtype=float32), name='#2d00ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.16863, 1.     , 0.     , 1.     ]], dtype=float32), name='#2bff00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.     , 0.50196, 1.     ]], dtype=float32), name='#ff0080', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.84314, 1.     , 1.     ]], dtype=float32), name='#00d7ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.81569, 0.     , 1.     ]], dtype=float32), name='#ffd000', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.48235, 0.     , 1.     , 1.     ]], dtype=float32), name='#7b00ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 1.     , 0.13725, 1.     ]], dtype=float32), name='#00ff23', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.     , 0.19608, 1.     ]], dtype=float32), name='#ff0032', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.53725, 1.     , 1.     ]], dtype=float32), name='#0089ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.87843, 1.     , 0.     , 1.     ]], dtype=float32), name='#e0ff00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.78431, 0.     , 1.     , 1.     ]], dtype=float32), name='#c800ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 1.     , 0.44314, 1.     ]], dtype=float32), name='#00ff71', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.10196, 0.     , 1.     ]], dtype=float32), name='#ff1a00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32))], 'contrast_limits': [[0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0]], 'name': ['666457: DAPI', '666457: AUTO TRITC', '666457: AUTO Cy5', '666457: rb Vimentin TRITC', '666457: rat FoxP3 Cy5', '666457: El1 TRITC', '666457: El1 Cy5', '666457: rat B220 TRITC', '666457: rb Ki67 Cy5', '666457: El2 TRITC', '666457: El2 Cy5', '666457: rb CD3e Cy5', '666457: El3 TRITC', '666457: El3 Cy5', '666457: g VE-cadherin Cy5', '666457: El4 TRITC', '666457: El4 Cy5', '666457: rat Ly6G Cy5', '666457: El5 TRITC', '666457: El5 Cy5', '666457: rb Pan CK TRITC', '666457: rat CD8a Cy5', '666457: El6 TRITC', '666457: El6 Cy5', '666457: F4_80 TRITC', '666457: rat CD4 Cy5', '666457: El7 TRITC', '666457: El7 Cy5'], 'visible': [True, True, True, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False], 'scale': [1, 1, 0.28, 0.28], 'metadata': {'omero': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Image', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'AcquisitionDate': 1731088895000, 'Name': '20241108_180135_2_lP638a_d241105_FFPE_Ms_TMA_11plex_updated_Ms_TMA_Comet_updated.tiff', 'omero:series': 0, 'omero:format': {'@type': 'TBD#Format', '@id': 162, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'OMETiff'}, 'Pixels': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Pixels', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'PhysicalSizeX': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'PhysicalSizeY': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'omero:sha1': 'Pending...', 'SignificantBits': 12, 'SizeX': 44643, 'SizeY': 44643, 'SizeZ': 1, 'SizeC': 28, 'SizeT': 1, 'Type': {'@type': 'TBD#PixelsType', '@id': 6, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'uint16'}}}}, 'axis_labels': ('t', 'z', 'y', 'x')}
        meta = {'channel_axis': 1, 'colormap': [Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.74118, 1.     , 1.     ]], dtype=float32), name='#00bdff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.91765, 0.     , 1.     ]], dtype=float32), name='#ffea00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.58431, 0.     , 1.     , 1.     ]], dtype=float32), name='#9500ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 1.     , 0.23922, 1.     ]], dtype=float32), name='#00ff3d', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.     , 0.09412, 1.     ]], dtype=float32), name='#ff0018', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.43529, 1.     , 1.     ]], dtype=float32), name='#006fff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.77647, 1.     , 0.     , 1.     ]], dtype=float32), name='#c6ff00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.88627, 0.     , 1.     , 1.     ]], dtype=float32), name='#e200ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.    , 0.    , 0.    , 1.    ],
            [0.    , 1.    , 0.5451, 1.    ]], dtype=float32), name='#00ff8b', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.20392, 0.     , 1.     ]], dtype=float32), name='#ff3400', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.12941, 1.     , 1.     ]], dtype=float32), name='#0021ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.47059, 1.     , 0.     , 1.     ]], dtype=float32), name='#78ff00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.     , 0.80784, 1.     ]], dtype=float32), name='#ff00ce', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 1.     , 0.85098, 1.     ]], dtype=float32), name='#00ffd9', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.    , 0.    , 0.    , 1.    ],
            [1.    , 0.5098, 0.    , 1.    ]], dtype=float32), name='#ff8200', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.17647, 0.     , 1.     , 1.     ]], dtype=float32), name='#2d00ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.16863, 1.     , 0.     , 1.     ]], dtype=float32), name='#2bff00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.     , 0.50196, 1.     ]], dtype=float32), name='#ff0080', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.84314, 1.     , 1.     ]], dtype=float32), name='#00d7ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.81569, 0.     , 1.     ]], dtype=float32), name='#ffd000', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.48235, 0.     , 1.     , 1.     ]], dtype=float32), name='#7b00ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 1.     , 0.13725, 1.     ]], dtype=float32), name='#00ff23', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.     , 0.19608, 1.     ]], dtype=float32), name='#ff0032', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.53725, 1.     , 1.     ]], dtype=float32), name='#0089ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.87843, 1.     , 0.     , 1.     ]], dtype=float32), name='#e0ff00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.78431, 0.     , 1.     , 1.     ]], dtype=float32), name='#c800ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 1.     , 0.44314, 1.     ]], dtype=float32), name='#00ff71', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.10196, 0.     , 1.     ]], dtype=float32), name='#ff1a00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32))], 'contrast_limits': [[0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0]], 'name': ['666457: DAPI', '666457: AUTO TRITC', '666457: AUTO Cy5', '666457: rb Vimentin TRITC', '666457: rat FoxP3 Cy5', '666457: El1 TRITC', '666457: El1 Cy5', '666457: rat B220 TRITC', '666457: rb Ki67 Cy5', '666457: El2 TRITC', '666457: El2 Cy5', '666457: rb CD3e Cy5', '666457: El3 TRITC', '666457: El3 Cy5', '666457: g VE-cadherin Cy5', '666457: El4 TRITC', '666457: El4 Cy5', '666457: rat Ly6G Cy5', '666457: El5 TRITC', '666457: El5 Cy5', '666457: rb Pan CK TRITC', '666457: rat CD8a Cy5', '666457: El6 TRITC', '666457: El6 Cy5', '666457: F4_80 TRITC', '666457: rat CD4 Cy5', '666457: El7 TRITC', '666457: El7 Cy5'], 'visible': [True, True, True, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False], 'scale': [1, 1, 0.28, 0.28], 'metadata': {'omero': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Image', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'AcquisitionDate': 1731088895000, 'Name': '20241108_180135_2_lP638a_d241105_FFPE_Ms_TMA_11plex_updated_Ms_TMA_Comet_updated.tiff', 'omero:series': 0, 'omero:format': {'@type': 'TBD#Format', '@id': 162, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'OMETiff'}, 'Pixels': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Pixels', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'PhysicalSizeX': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'PhysicalSizeY': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'omero:sha1': 'Pending...', 'SignificantBits': 12, 'SizeX': 44643, 'SizeY': 44643, 'SizeZ': 1, 'SizeC': 28, 'SizeT': 1, 'Type': {'@type': 'TBD#PixelsType', '@id': 6, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'uint16'}}}}, 'axis_labels': ('t', 'z', 'y', 'x')}
   1536 except TypeError as exc:
   1537     if 'unexpected keyword argument' not in str(exc):

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari\utils\migrations.py:101, in rename_argument.<locals>._wrapper.<locals>._update_from_dict(*args=(Viewer(camera=Camera(center=(0.0, 0.0, 0.0), zoo...use_drag_gen={}, _mouse_wheel_gen={}, _keymap={}), [dask.array<stack, shape=(1, 28, 1, 44643, 44643)...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 22321, 22321)...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 11160, 11160)...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 5580, 5580), ...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 2790, 2790), ...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 1395, 1395), ...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 697, 697), dt...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 348, 348), dt...ize=(1, 1, 1, 348, 348), chunktype=numpy.ndarray>]), **kwargs={'axis_labels': ('t', 'z', 'y', 'x'), 'channel_axis': 1, 'colormap': [Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.    , 0.    , 0. ...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.    , 0.    , 0. ...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), ...], 'contrast_limits': [[0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], ...], 'metadata': {'omero': {'@id': 666457, '@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Image', 'AcquisitionDate': 1731088895000, 'Name': '20241108_180135_2_lP638a_d241105_FFPE_Ms_TMA_11plex_updated_Ms_TMA_Comet_updated.tiff', 'Pixels': {'@id': 666457, '@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Pixels', 'PhysicalSizeX': {'@type': 'TBD#LengthI', 'Symbol': 'µm', 'Unit': 'MICROMETER', 'Value': 0.28}, 'PhysicalSizeY': {'@type': 'TBD#LengthI', 'Symbol': 'µm', 'Unit': 'MICROMETER', 'Value': 0.28}, 'SignificantBits': 12, 'SizeC': 28, 'SizeT': 1, 'SizeX': 44643, 'SizeY': 44643, 'SizeZ': 1, ...}, 'omero:details': {'@type': 'TBD#Details', 'group': {'@id': 261, '@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', 'Name': 'BIOP Public', 'omero:details': {'@type': 'TBD#Details', 'permissions': {...}}}, 'owner': {'@id': 502, '@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter'}, 'permissions': {'@type': 'TBD#Permissions', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isGroupAnnotate': False, 'isGroupRead': True, 'isGroupWrite': False, 'isUserRead': True, 'isUserWrite': True, ...}}, 'omero:format': {'@id': 162, '@type': 'TBD#Format', 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isGroupAnnotate': False, 'isGroupRead': True, 'isGroupWrite': False, 'isUserRead': True, 'isUserWrite': True, ...}}, 'value': 'OMETiff'}, 'omero:series': 0}}, 'name': ['666457: DAPI', '666457: AUTO TRITC', '666457: AUTO Cy5', '666457: rb Vimentin TRITC', '666457: rat FoxP3 Cy5', '666457: El1 TRITC', '666457: El1 Cy5', '666457: rat B220 TRITC', '666457: rb Ki67 Cy5', '666457: El2 TRITC', '666457: El2 Cy5', '666457: rb CD3e Cy5', '666457: El3 TRITC', '666457: El3 Cy5', '666457: g VE-cadherin Cy5', '666457: El4 TRITC', '666457: El4 Cy5', '666457: rat Ly6G Cy5', '666457: El5 TRITC', '666457: El5 Cy5', ...], 'scale': [1, 1, 0.28, 0.28], 'visible': [True, True, True, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, ...]})
     99     kwargs = kwargs.copy()
    100     kwargs[to_name] = kwargs.pop(from_name)
--> 101 return func(*args, **kwargs)
        func = <function ViewerModel.add_image at 0x0000010BC8CD2940>
        kwargs = {'channel_axis': 1, 'colormap': [Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.74118, 1.     , 1.     ]], dtype=float32), name='#00bdff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.91765, 0.     , 1.     ]], dtype=float32), name='#ffea00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.58431, 0.     , 1.     , 1.     ]], dtype=float32), name='#9500ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 1.     , 0.23922, 1.     ]], dtype=float32), name='#00ff3d', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.     , 0.09412, 1.     ]], dtype=float32), name='#ff0018', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.43529, 1.     , 1.     ]], dtype=float32), name='#006fff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.77647, 1.     , 0.     , 1.     ]], dtype=float32), name='#c6ff00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.88627, 0.     , 1.     , 1.     ]], dtype=float32), name='#e200ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.    , 0.    , 0.    , 1.    ],
            [0.    , 1.    , 0.5451, 1.    ]], dtype=float32), name='#00ff8b', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.20392, 0.     , 1.     ]], dtype=float32), name='#ff3400', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.12941, 1.     , 1.     ]], dtype=float32), name='#0021ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.47059, 1.     , 0.     , 1.     ]], dtype=float32), name='#78ff00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.     , 0.80784, 1.     ]], dtype=float32), name='#ff00ce', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 1.     , 0.85098, 1.     ]], dtype=float32), name='#00ffd9', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.    , 0.    , 0.    , 1.    ],
            [1.    , 0.5098, 0.    , 1.    ]], dtype=float32), name='#ff8200', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.17647, 0.     , 1.     , 1.     ]], dtype=float32), name='#2d00ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.16863, 1.     , 0.     , 1.     ]], dtype=float32), name='#2bff00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.     , 0.50196, 1.     ]], dtype=float32), name='#ff0080', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.84314, 1.     , 1.     ]], dtype=float32), name='#00d7ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.81569, 0.     , 1.     ]], dtype=float32), name='#ffd000', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.48235, 0.     , 1.     , 1.     ]], dtype=float32), name='#7b00ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 1.     , 0.13725, 1.     ]], dtype=float32), name='#00ff23', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.     , 0.19608, 1.     ]], dtype=float32), name='#ff0032', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.53725, 1.     , 1.     ]], dtype=float32), name='#0089ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.87843, 1.     , 0.     , 1.     ]], dtype=float32), name='#e0ff00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.78431, 0.     , 1.     , 1.     ]], dtype=float32), name='#c800ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 1.     , 0.44314, 1.     ]], dtype=float32), name='#00ff71', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.10196, 0.     , 1.     ]], dtype=float32), name='#ff1a00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32))], 'contrast_limits': [[0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0]], 'name': ['666457: DAPI', '666457: AUTO TRITC', '666457: AUTO Cy5', '666457: rb Vimentin TRITC', '666457: rat FoxP3 Cy5', '666457: El1 TRITC', '666457: El1 Cy5', '666457: rat B220 TRITC', '666457: rb Ki67 Cy5', '666457: El2 TRITC', '666457: El2 Cy5', '666457: rb CD3e Cy5', '666457: El3 TRITC', '666457: El3 Cy5', '666457: g VE-cadherin Cy5', '666457: El4 TRITC', '666457: El4 Cy5', '666457: rat Ly6G Cy5', '666457: El5 TRITC', '666457: El5 Cy5', '666457: rb Pan CK TRITC', '666457: rat CD8a Cy5', '666457: El6 TRITC', '666457: El6 Cy5', '666457: F4_80 TRITC', '666457: rat CD4 Cy5', '666457: El7 TRITC', '666457: El7 Cy5'], 'visible': [True, True, True, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False], 'scale': [1, 1, 0.28, 0.28], 'metadata': {'omero': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Image', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'AcquisitionDate': 1731088895000, 'Name': '20241108_180135_2_lP638a_d241105_FFPE_Ms_TMA_11plex_updated_Ms_TMA_Comet_updated.tiff', 'omero:series': 0, 'omero:format': {'@type': 'TBD#Format', '@id': 162, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'OMETiff'}, 'Pixels': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Pixels', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'PhysicalSizeX': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'PhysicalSizeY': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'omero:sha1': 'Pending...', 'SignificantBits': 12, 'SizeX': 44643, 'SizeY': 44643, 'SizeZ': 1, 'SizeC': 28, 'SizeT': 1, 'Type': {'@type': 'TBD#PixelsType', '@id': 6, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'uint16'}}}}, 'axis_labels': ('t', 'z', 'y', 'x')}
        args = (Viewer(camera=Camera(center=(0.0, 0.0, 0.0), zoom=1.0, angles=(0.0, 0.0, 90.0), perspective=0.0, mouse_pan=True, mouse_zoom=True), cursor=Cursor(position=(1.0, 1.0), scaled=True, style=<CursorStyle.STANDARD: 'standard'>, size=1.0), dims=Dims(ndim=2, ndisplay=2, order=(0, 1), axis_labels=('0', '1'), rollable=(True, True), range=(RangeTuple(start=0.0, stop=2.0, step=1.0), RangeTuple(start=0.0, stop=2.0, step=1.0)), margin_left=(0.0, 0.0), margin_right=(0.0, 0.0), point=(0.0, 0.0), last_used=0), grid=GridCanvas(stride=1, shape=(-1, -1), enabled=False), layers=[], help='', status='', tooltip=Tooltip(visible=False, text=''), theme='dark', title='napari', mouse_over_canvas=False, mouse_move_callbacks=[], mouse_drag_callbacks=[], mouse_double_click_callbacks=[<function double_click_to_zoom at 0x0000010BC8C52A60>], mouse_wheel_callbacks=[<function dims_scroll at 0x0000010BC8C520D0>], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, _keymap={}), [dask.array<stack, shape=(1, 28, 1, 44643, 44643), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 22321, 22321), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 11160, 11160), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 5580, 5580), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 2790, 2790), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 1395, 1395), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 697, 697), dtype=uint16, chunksize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 348, 348), dtype=uint16, chunksize=(1, 1, 1, 348, 348), chunktype=numpy.ndarray>])

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari\components\viewer_model.py:1011, in ViewerModel.add_image(self=Viewer(camera=Camera(center=(0.0, 0.0, 0.0), zoo...use_drag_gen={}, _mouse_wheel_gen={}, _keymap={}), data=[dask.array<stack, shape=(1, 28, 1, 44643, 44643)...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 22321, 22321)...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 11160, 11160)...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 5580, 5580), ...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 2790, 2790), ...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 1395, 1395), ...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 697, 697), dt...ize=(1, 1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<stack, shape=(1, 28, 1, 348, 348), dt...ize=(1, 1, 1, 348, 348), chunktype=numpy.ndarray>], channel_axis=1, affine=None, axis_labels=('t', 'z', 'y', 'x'), attenuation=0.05, blending=None, cache=True, colormap=[Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.    , 0.    , 0. ...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.    , 0.    , 0. ...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), ...], contrast_limits=[[0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], [0.0, 4095.0], ...], custom_interpolation_kernel_2d=None, depiction='volume', experimental_clipping_planes=None, gamma=1.0, interpolation2d='nearest', interpolation3d='linear', iso_threshold=None, metadata={'omero': {'@id': 666457, '@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Image', 'AcquisitionDate': 1731088895000, 'Name': '20241108_180135_2_lP638a_d241105_FFPE_Ms_TMA_11plex_updated_Ms_TMA_Comet_updated.tiff', 'Pixels': {'@id': 666457, '@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Pixels', 'PhysicalSizeX': {'@type': 'TBD#LengthI', 'Symbol': 'µm', 'Unit': 'MICROMETER', 'Value': 0.28}, 'PhysicalSizeY': {'@type': 'TBD#LengthI', 'Symbol': 'µm', 'Unit': 'MICROMETER', 'Value': 0.28}, 'SignificantBits': 12, 'SizeC': 28, 'SizeT': 1, 'SizeX': 44643, 'SizeY': 44643, 'SizeZ': 1, ...}, 'omero:details': {'@type': 'TBD#Details', 'group': {'@id': 261, '@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', 'Name': 'BIOP Public', 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isGroupAnnotate': False, 'isGroupRead': True, 'isGroupWrite': False, 'isUserRead': True, 'isUserWrite': True, ...}}}, 'owner': {'@id': 502, '@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter'}, 'permissions': {'@type': 'TBD#Permissions', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isGroupAnnotate': False, 'isGroupRead': True, 'isGroupWrite': False, 'isUserRead': True, 'isUserWrite': True, ...}}, 'omero:format': {'@id': 162, '@type': 'TBD#Format', 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isGroupAnnotate': False, 'isGroupRead': True, 'isGroupWrite': False, 'isUserRead': True, 'isUserWrite': True, ...}}, 'value': 'OMETiff'}, 'omero:series': 0}}, multiscale=None, name=['666457: DAPI', '666457: AUTO TRITC', '666457: AUTO Cy5', '666457: rb Vimentin TRITC', '666457: rat FoxP3 Cy5', '666457: El1 TRITC', '666457: El1 Cy5', '666457: rat B220 TRITC', '666457: rb Ki67 Cy5', '666457: El2 TRITC', '666457: El2 Cy5', '666457: rb CD3e Cy5', '666457: El3 TRITC', '666457: El3 Cy5', '666457: g VE-cadherin Cy5', '666457: El4 TRITC', '666457: El4 Cy5', '666457: rat Ly6G Cy5', '666457: El5 TRITC', '666457: El5 Cy5', ...], opacity=1.0, plane=None, projection_mode='none', rendering='mip', rgb=None, rotate=None, scale=[1, 1, 0.28, 0.28], shear=None, translate=None, units=None, visible=[True, True, True, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, ...])
   1007     return layer
   1009 layerdata_list = split_channels(data, channel_axis, **kwargs)
-> 1011 layer_list = [
        layerdata_list = [([dask.array<getitem, shape=(1, 1, 44643, 44643), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 22321, 22321), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 11160, 11160), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 5580, 5580), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 2790, 2790), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 1395, 1395), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 697, 697), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 348, 348), dtype=uint16, chunksize=(1, 1, 348, 348), chunktype=numpy.ndarray>], {'rgb': None, 'axis_labels': ('t', 'z', 'y', 'x'), 'colormap': Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.74118, 1.     , 1.     ]], dtype=float32), name='#00bdff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'contrast_limits': [0.0, 4095.0], 'gamma': 1.0, 'interpolation2d': 'nearest', 'interpolation3d': 'linear', 'rendering': 'mip', 'depiction': 'volume', 'iso_threshold': None, 'attenuation': 0.05, 'name': '666457: DAPI', 'metadata': {'omero': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Image', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 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False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'AcquisitionDate': 1731088895000, 'Name': '20241108_180135_2_lP638a_d241105_FFPE_Ms_TMA_11plex_updated_Ms_TMA_Comet_updated.tiff', 'omero:series': 0, 'omero:format': {'@type': 'TBD#Format', '@id': 162, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'OMETiff'}, 'Pixels': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Pixels', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'PhysicalSizeX': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'PhysicalSizeY': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'omero:sha1': 'Pending...', 'SignificantBits': 12, 'SizeX': 44643, 'SizeY': 44643, 'SizeZ': 1, 'SizeC': 28, 'SizeT': 1, 'Type': {'@type': 'TBD#PixelsType', '@id': 6, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'uint16'}}}}, 'scale': [1, 1, 0.28, 0.28], 'translate': None, 'rotate': None, 'shear': None, 'affine': None, 'opacity': 1.0, 'blending': 'additive', 'visible': False, 'multiscale': True, 'cache': True, 'plane': None, 'experimental_clipping_planes': None, 'custom_interpolation_kernel_2d': None, 'projection_mode': 'none', 'units': None}, 'image'), ([dask.array<getitem, shape=(1, 1, 44643, 44643), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 22321, 22321), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 11160, 11160), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 5580, 5580), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 2790, 2790), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 1395, 1395), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 697, 697), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 348, 348), dtype=uint16, chunksize=(1, 1, 348, 348), chunktype=numpy.ndarray>], {'rgb': None, 'axis_labels': ('t', 'z', 'y', 'x'), 'colormap': Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.78431, 0.     , 1.     , 1.     ]], dtype=float32), name='#c800ff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'contrast_limits': [0.0, 4095.0], 'gamma': 1.0, 'interpolation2d': 'nearest', 'interpolation3d': 'linear', 'rendering': 'mip', 'depiction': 'volume', 'iso_threshold': None, 'attenuation': 0.05, 'name': '666457: rat CD4 Cy5', 'metadata': {'omero': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Image', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'AcquisitionDate': 1731088895000, 'Name': '20241108_180135_2_lP638a_d241105_FFPE_Ms_TMA_11plex_updated_Ms_TMA_Comet_updated.tiff', 'omero:series': 0, 'omero:format': {'@type': 'TBD#Format', '@id': 162, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'OMETiff'}, 'Pixels': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Pixels', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'PhysicalSizeX': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'PhysicalSizeY': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'omero:sha1': 'Pending...', 'SignificantBits': 12, 'SizeX': 44643, 'SizeY': 44643, 'SizeZ': 1, 'SizeC': 28, 'SizeT': 1, 'Type': {'@type': 'TBD#PixelsType', '@id': 6, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'uint16'}}}}, 'scale': [1, 1, 0.28, 0.28], 'translate': None, 'rotate': None, 'shear': None, 'affine': None, 'opacity': 1.0, 'blending': 'additive', 'visible': False, 'multiscale': True, 'cache': True, 'plane': None, 'experimental_clipping_planes': None, 'custom_interpolation_kernel_2d': None, 'projection_mode': 'none', 'units': None}, 'image'), ([dask.array<getitem, shape=(1, 1, 44643, 44643), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 22321, 22321), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 11160, 11160), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 5580, 5580), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 2790, 2790), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 1395, 1395), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 697, 697), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 348, 348), dtype=uint16, chunksize=(1, 1, 348, 348), chunktype=numpy.ndarray>], {'rgb': None, 'axis_labels': ('t', 'z', 'y', 'x'), 'colormap': Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 1.     , 0.44314, 1.     ]], dtype=float32), name='#00ff71', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'contrast_limits': [0.0, 4095.0], 'gamma': 1.0, 'interpolation2d': 'nearest', 'interpolation3d': 'linear', 'rendering': 'mip', 'depiction': 'volume', 'iso_threshold': None, 'attenuation': 0.05, 'name': '666457: El7 TRITC', 'metadata': {'omero': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Image', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'AcquisitionDate': 1731088895000, 'Name': '20241108_180135_2_lP638a_d241105_FFPE_Ms_TMA_11plex_updated_Ms_TMA_Comet_updated.tiff', 'omero:series': 0, 'omero:format': {'@type': 'TBD#Format', '@id': 162, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'OMETiff'}, 'Pixels': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Pixels', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'PhysicalSizeX': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'PhysicalSizeY': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'omero:sha1': 'Pending...', 'SignificantBits': 12, 'SizeX': 44643, 'SizeY': 44643, 'SizeZ': 1, 'SizeC': 28, 'SizeT': 1, 'Type': {'@type': 'TBD#PixelsType', '@id': 6, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'uint16'}}}}, 'scale': [1, 1, 0.28, 0.28], 'translate': None, 'rotate': None, 'shear': None, 'affine': None, 'opacity': 1.0, 'blending': 'additive', 'visible': False, 'multiscale': True, 'cache': True, 'plane': None, 'experimental_clipping_planes': None, 'custom_interpolation_kernel_2d': None, 'projection_mode': 'none', 'units': None}, 'image'), ([dask.array<getitem, shape=(1, 1, 44643, 44643), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 22321, 22321), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 11160, 11160), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 5580, 5580), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 2790, 2790), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 1395, 1395), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 697, 697), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 348, 348), dtype=uint16, chunksize=(1, 1, 348, 348), chunktype=numpy.ndarray>], {'rgb': None, 'axis_labels': ('t', 'z', 'y', 'x'), 'colormap': Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [1.     , 0.10196, 0.     , 1.     ]], dtype=float32), name='#ff1a00', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'contrast_limits': [0.0, 4095.0], 'gamma': 1.0, 'interpolation2d': 'nearest', 'interpolation3d': 'linear', 'rendering': 'mip', 'depiction': 'volume', 'iso_threshold': None, 'attenuation': 0.05, 'name': '666457: El7 Cy5', 'metadata': {'omero': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Image', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'AcquisitionDate': 1731088895000, 'Name': '20241108_180135_2_lP638a_d241105_FFPE_Ms_TMA_11plex_updated_Ms_TMA_Comet_updated.tiff', 'omero:series': 0, 'omero:format': {'@type': 'TBD#Format', '@id': 162, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'OMETiff'}, 'Pixels': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Pixels', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'PhysicalSizeX': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'PhysicalSizeY': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'omero:sha1': 'Pending...', 'SignificantBits': 12, 'SizeX': 44643, 'SizeY': 44643, 'SizeZ': 1, 'SizeC': 28, 'SizeT': 1, 'Type': {'@type': 'TBD#PixelsType', '@id': 6, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'uint16'}}}}, 'scale': [1, 1, 0.28, 0.28], 'translate': None, 'rotate': None, 'shear': None, 'affine': None, 'opacity': 1.0, 'blending': 'additive', 'visible': False, 'multiscale': True, 'cache': True, 'plane': None, 'experimental_clipping_planes': None, 'custom_interpolation_kernel_2d': None, 'projection_mode': 'none', 'units': None}, 'image')]
        Image = <class 'napari.layers.image.image.Image'>
   1012     Image(image, **i_kwargs) for image, i_kwargs, _ in layerdata_list
   1013 ]
   1014 self.layers.extend(layer_list)
   1016 return layer_list

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari\components\viewer_model.py:1012, in <listcomp>(.0=<list_iterator object>)
   1007     return layer
   1009 layerdata_list = split_channels(data, channel_axis, **kwargs)
   1011 layer_list = [
-> 1012     Image(image, **i_kwargs) for image, i_kwargs, _ in layerdata_list
        Image = <class 'napari.layers.image.image.Image'>
        image = [dask.array<getitem, shape=(1, 1, 44643, 44643), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 22321, 22321), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 11160, 11160), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 5580, 5580), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 2790, 2790), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 1395, 1395), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 697, 697), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 348, 348), dtype=uint16, chunksize=(1, 1, 348, 348), chunktype=numpy.ndarray>]
        image, i_kwargs, _ = ([dask.array<getitem, shape=(1, 1, 44643, 44643), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 22321, 22321), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 11160, 11160), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 5580, 5580), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 2790, 2790), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 1395, 1395), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 697, 697), dtype=uint16, chunksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 348, 348), dtype=uint16, chunksize=(1, 1, 348, 348), chunktype=numpy.ndarray>], {'rgb': None, 'axis_labels': ('t', 'z', 'y', 'x'), 'colormap': Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.74118, 1.     , 1.     ]], dtype=float32), name='#00bdff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'contrast_limits': [0.0, 4095.0], 'gamma': 1.0, 'interpolation2d': 'nearest', 'interpolation3d': 'linear', 'rendering': 'mip', 'depiction': 'volume', 'iso_threshold': None, 'attenuation': 0.05, 'name': '666457: DAPI', 'metadata': {'omero': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Image', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'AcquisitionDate': 1731088895000, 'Name': '20241108_180135_2_lP638a_d241105_FFPE_Ms_TMA_11plex_updated_Ms_TMA_Comet_updated.tiff', 'omero:series': 0, 'omero:format': {'@type': 'TBD#Format', '@id': 162, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'OMETiff'}, 'Pixels': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Pixels', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'PhysicalSizeX': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'PhysicalSizeY': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'omero:sha1': 'Pending...', 'SignificantBits': 12, 'SizeX': 44643, 'SizeY': 44643, 'SizeZ': 1, 'SizeC': 28, 'SizeT': 1, 'Type': {'@type': 'TBD#PixelsType', '@id': 6, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'uint16'}}}}, 'scale': [1, 1, 0.28, 0.28], 'translate': None, 'rotate': None, 'shear': None, 'affine': None, 'opacity': 1.0, 'blending': 'translucent_no_depth', 'visible': True, 'multiscale': True, 'cache': True, 'plane': None, 'experimental_clipping_planes': None, 'custom_interpolation_kernel_2d': None, 'projection_mode': 'none', 'units': None}, 'image')
        i_kwargs = {'rgb': None, 'axis_labels': ('t', 'z', 'y', 'x'), 'colormap': Colormap(colors=ColorArray([[0.     , 0.     , 0.     , 1.     ],
            [0.     , 0.74118, 1.     , 1.     ]], dtype=float32), name='#00bdff', interpolation=<ColormapInterpolationMode.LINEAR: 'linear'>, controls=array([0., 1.], dtype=float32)), 'contrast_limits': [0.0, 4095.0], 'gamma': 1.0, 'interpolation2d': 'nearest', 'interpolation3d': 'linear', 'rendering': 'mip', 'depiction': 'volume', 'iso_threshold': None, 'attenuation': 0.05, 'name': '666457: DAPI', 'metadata': {'omero': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Image', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'AcquisitionDate': 1731088895000, 'Name': '20241108_180135_2_lP638a_d241105_FFPE_Ms_TMA_11plex_updated_Ms_TMA_Comet_updated.tiff', 'omero:series': 0, 'omero:format': {'@type': 'TBD#Format', '@id': 162, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'OMETiff'}, 'Pixels': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Pixels', '@id': 666457, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 502}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 261, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': False, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'BIOP Public'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'PhysicalSizeX': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'PhysicalSizeY': {'@type': 'TBD#LengthI', 'Unit': 'MICROMETER', 'Symbol': 'µm', 'Value': 0.28}, 'omero:sha1': 'Pending...', 'SignificantBits': 12, 'SizeX': 44643, 'SizeY': 44643, 'SizeZ': 1, 'SizeC': 28, 'SizeT': 1, 'Type': {'@type': 'TBD#PixelsType', '@id': 6, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'value': 'uint16'}}}}, 'scale': [1, 1, 0.28, 0.28], 'translate': None, 'rotate': None, 'shear': None, 'affine': None, 'opacity': 1.0, 'blending': 'translucent_no_depth', 'visible': True, 'multiscale': True, 'cache': True, 'plane': None, 'experimental_clipping_planes': None, 'custom_interpolation_kernel_2d': None, 'projection_mode': 'none', 'units': None}
        _ = 'image'
   1013 ]
   1014 self.layers.extend(layer_list)
   1016 return layer_list

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari\layers\base\base.py:115, in PostInit.__call__(self=<class 'napari.layers.image.image.Image'>, *args=([dask.array<getitem, shape=(1, 1, 44643, 44643), ...nksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 22321, 22321), ...nksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 11160, 11160), ...nksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 5580, 5580), dt...nksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 2790, 2790), dt...nksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 1395, 1395), dt...nksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 697, 697), dtyp...nksize=(1, 1, 512, 512), chunktype=numpy.ndarray>, dask.array<getitem, shape=(1, 1, 348, 348), dtyp...nksize=(1, 1, 348, 348), chunktype=numpy.ndarray>],), **kwargs={'affine': None, 'attenuation': 0.05, 'axis_labels': ('t', 'z', 'y', 'x'), 'blending': 'translucent_no_depth', 'cache': True, 'colormap': Colormap(colors=ColorArray([[0.     , 0.     , 0...inear'>, controls=array([0., 1.], dtype=float32)), 'contrast_limits': [0.0, 4095.0], 'custom_interpolation_kernel_2d': None, 'depiction': 'volume', 'experimental_clipping_planes': None, ...})
    113 def __call__(self, *args, **kwargs):
    114     obj = super().__call__(*args, **kwargs)
--> 115     obj._post_init()
        obj = <Image layer '666457: DAPI' at 0x10bae2f4af0>
    116     return obj

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari\layers\_scalar_field\scalar_field.py:311, in ScalarFieldBase._post_init(self=<Image layer '666457: DAPI'>)
    309 def _post_init(self):
    310     # Trigger generation of view slice and thumbnail
--> 311     self.refresh()
        self = <Image layer '666457: DAPI' at 0x10bae2f4af0>

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari\layers\base\base.py:1569, in Layer.refresh(self=<Image layer '666457: DAPI'>, event=None, thumbnail=True, data_displayed=True, highlight=True, extent=True, force=False)
   1566     self.events.reload(layer=self)
   1567 # Otherwise, slice immediately on the calling thread.
   1568 else:
-> 1569     self._refresh_sync(
        self = <Image layer '666457: DAPI' at 0x10bae2f4af0>
        thumbnail = True
        data_displayed = True
        highlight = True
        extent = True
        force = False
   1570         thumbnail=thumbnail,
   1571         data_displayed=data_displayed,
   1572         highlight=highlight,
   1573         extent=extent,
   1574         force=force,
   1575     )

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari\layers\base\base.py:1593, in Layer._refresh_sync(self=<Image layer '666457: DAPI'>, thumbnail=True, data_displayed=True, highlight=True, extent=True, force=False)
   1591     self._clear_extent_augmented()
   1592 if data_displayed:
-> 1593     self.set_view_slice()
        self = <Image layer '666457: DAPI' at 0x10bae2f4af0>
   1594     self.events.set_data()
   1595 if thumbnail:

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari\layers\base\base.py:1285, in Layer.set_view_slice(self=<Image layer '666457: DAPI'>)
   1283 def set_view_slice(self) -> None:
   1284     with self.dask_optimized_slicing():
-> 1285         self._set_view_slice()
        self = <Image layer '666457: DAPI' at 0x10bae2f4af0>

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari\layers\_scalar_field\scalar_field.py:490, in ScalarFieldBase._set_view_slice(self=<Image layer '666457: DAPI'>)
    482 # The new slicing code makes a request from the existing state and
    483 # executes the request on the calling thread directly.
    484 # For async slicing, the calling thread will not be the main thread.
    485 request = self._make_slice_request_internal(
    486     slice_input=self._slice_input,
    487     data_slice=self._data_slice,
    488     dask_indexer=nullcontext,
    489 )
--> 490 response = request()
        request = _ImageSliceRequest(slice_input=_SliceInput(ndisplay=2, world_slice=_ThickNDSlice(point=(0, 0, 0, 0), margin_left=(0, 0, 0, 0), margin_right=(0, 0, 0, 0)), order=(0, 1, 2, 3)), dask_indexer=<class 'contextlib.nullcontext'>, data_slice=_ThickNDSlice(point=(0.0, 0.0, nan, nan), margin_left=(0.0, 0.0, nan, nan), margin_right=(0.0, 0.0, nan, nan)), projection_mode=<ImageProjectionMode.NONE: 'none'>, corner_pixels=array([[  0,   0,   0,   0],
       [  0,   0, 347, 347]]), id=1)
    491 self._update_slice_response(response)

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari\layers\image\_slice.py:210, in _ImageSliceRequest.__call__(self=_ImageSliceRequest(slice_input=_SliceInput(ndisp...,   0,   0],
       [  0,   0, 347, 347]]), id=1))
    205     return _ImageSliceResponse.make_empty(
    206         slice_input=self.slice_input, rgb=self.rgb, request_id=self.id
    207     )
    208 with self.dask_indexer():
    209     return (
--> 210         self._call_multi_scale()
        self = _ImageSliceRequest(slice_input=_SliceInput(ndisplay=2, world_slice=_ThickNDSlice(point=(0, 0, 0, 0), margin_left=(0, 0, 0, 0), margin_right=(0, 0, 0, 0)), order=(0, 1, 2, 3)), dask_indexer=<class 'contextlib.nullcontext'>, data_slice=_ThickNDSlice(point=(0.0, 0.0, nan, nan), margin_left=(0.0, 0.0, nan, nan), margin_right=(0.0, 0.0, nan, nan)), projection_mode=<ImageProjectionMode.NONE: 'none'>, corner_pixels=array([[  0,   0,   0,   0],
       [  0,   0, 347, 347]]), id=1)
        self.multiscale = True
    211         if self.multiscale
    212         else self._call_single_scale()
    213     )

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari\layers\image\_slice.py:272, in _ImageSliceRequest._call_multi_scale(self=_ImageSliceRequest(slice_input=_SliceInput(ndisp...,   0,   0],
       [  0,   0, 347, 347]]), id=1))
    270 # project the thick slice
    271 data_slice = self._thick_slice_at_level(level)
--> 272 data = self._project_thick_slice(data, data_slice)
        data = dask.array<getitem, shape=(1, 1, 348, 348), dtype=uint16, chunksize=(1, 1, 348, 348), chunktype=numpy.ndarray>
        data_slice = _ThickNDSlice(point=(0.0, 0.0, nan, nan), margin_left=(0.0, 0.0, nan, nan), margin_right=(0.0, 0.0, nan, nan))
        self = _ImageSliceRequest(slice_input=_SliceInput(ndisplay=2, world_slice=_ThickNDSlice(point=(0, 0, 0, 0), margin_left=(0, 0, 0, 0), margin_right=(0, 0, 0, 0)), order=(0, 1, 2, 3)), dask_indexer=<class 'contextlib.nullcontext'>, data_slice=_ThickNDSlice(point=(0.0, 0.0, nan, nan), margin_left=(0.0, 0.0, nan, nan), margin_right=(0.0, 0.0, nan, nan)), projection_mode=<ImageProjectionMode.NONE: 'none'>, corner_pixels=array([[  0,   0,   0,   0],
       [  0,   0, 347, 347]]), id=1)
    274 order = self._get_order()
    275 data = np.transpose(data, order)

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari\layers\image\_slice.py:316, in _ImageSliceRequest._project_thick_slice(self=_ImageSliceRequest(slice_input=_SliceInput(ndisp...,   0,   0],
       [  0,   0, 347, 347]]), id=1), data=dask.array<getitem, shape=(1, 1, 348, 348), dtyp...nksize=(1, 1, 348, 348), chunktype=numpy.ndarray>, data_slice=_ThickNDSlice(point=(0.0, 0.0, nan, nan), margin....0, nan, nan), margin_right=(0.0, 0.0, nan, nan)))
    313 if self.projection_mode == 'none':
    314     # early return with only the dims point being used
    315     slices = self._point_to_slices(data_slice.point)
--> 316     return np.asarray(data[slices])
        slices = (0, 0, slice(None, None, None), slice(None, None, None))
        np = <module 'numpy' from 'D:\\pixi\\omero-ngff\\.pixi\\envs\\default\\lib\\site-packages\\numpy\\__init__.py'>
        data = dask.array<getitem, shape=(1, 1, 348, 348), dtype=uint16, chunksize=(1, 1, 348, 348), chunktype=numpy.ndarray>
    318 slices = self._data_slice_to_slices(
    319     data_slice, self.slice_input.displayed
    320 )
    322 return project_slice(
    323     data=np.asarray(data[slices]),
    324     axis=tuple(self.slice_input.not_displayed),
    325     mode=self.projection_mode,
    326 )

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\dask\array\core.py:1693, in Array.__array__(self=dask.array<getitem, shape=(348, 348), dtype=uint16, chunksize=(348, 348), chunktype=numpy.ndarray>, dtype=None, **kwargs={})
   1692 def __array__(self, dtype=None, **kwargs):
-> 1693     x = self.compute()
        self = dask.array<getitem, shape=(348, 348), dtype=uint16, chunksize=(348, 348), chunktype=numpy.ndarray>
   1694     if dtype and x.dtype != dtype:
   1695         x = x.astype(dtype)

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\dask\base.py:376, in DaskMethodsMixin.compute(self=dask.array<getitem, shape=(348, 348), dtype=uint16, chunksize=(348, 348), chunktype=numpy.ndarray>, **kwargs={})
    352 def compute(self, **kwargs):
    353     """Compute this dask collection
    354
    355     This turns a lazy Dask collection into its in-memory equivalent.
   (...)
    374     dask.compute
    375     """
--> 376     (result,) = compute(self, traverse=False, **kwargs)
        self = dask.array<getitem, shape=(348, 348), dtype=uint16, chunksize=(348, 348), chunktype=numpy.ndarray>
        kwargs = {}
    377     return result

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\dask\base.py:662, in compute(traverse=False, optimize_graph=True, scheduler=None, get=None, *args=(dask.array<getitem, shape=(348, 348), dtype=uint16, chunksize=(348, 348), chunktype=numpy.ndarray>,), **kwargs={})
    659     postcomputes.append(x.__dask_postcompute__())
    661 with shorten_traceback():
--> 662     results = schedule(dsk, keys, **kwargs)
        schedule = <function get at 0x0000010BC09B5A60>
        dsk = HighLevelGraph with 7 layers.
<dask.highlevelgraph.HighLevelGraph object at 0x10c4590fdf0>
 0. get_tile-5bd1d5eb-78ea-44e8-8f8a-fc6d10a4c4f1
 1. from-value-8f4a5117d9a9cb374dbf48644d0c2225
 2. stack-98f2705b2c3ec68cba66a4f9467fd67e
 3. stack-fdd3d8ffd0c6c7b3d80846e1d29a3b19
 4. stack-a67c2c7902a455b8b1c2b318e615734a
 5. getitem-c97045ba3c1a4ea4ad5ca6fc81eedac7
 6. getitem-1e5d1f49b070e098317bd3a140fe726a

        keys = [[[('getitem-1e5d1f49b070e098317bd3a140fe726a', 0, 0)]]]
        kwargs = {}
    664 return repack([f(r, *a) for r, (f, a) in zip(results, postcomputes)])

File D:\pixi\omero-ngff\.pixi\envs\default\lib\site-packages\napari_omero\plugins\loaders.py:200, in get_pyramid_lazy.<locals>.get_tile(tile_name='0,0,0,0,0,0,348,348')
    198 tile = pix.getTile(z, c, t, x, y, w, h)
    199 tile = np.frombuffer(tile, dtype=np.uint8)
--> 200 tile = tile.reshape((h, w))
        w = 348
        h = 348
        tile = array([0, 0, ..., 0, 0], dtype=uint8)
        (h, w) = (348, 348)
    201 return tile

ValueError: cannot reshape array of size 242208 into shape (348,348)

[will-moore]

Ah, so I think the channel names are possibly stored in the OME/METADATA.ome.xml?

I started to download the ome.tiff from your public OMERO but then realised it was 141 GB, so I don't even have space on my laptop to download it, and not to convert it.

The ngff copy on your s3 is not public is it? That would be easiest to work with if it was.
Or if you have a smaller example that is possible to download?

Thanks

[romainGuiet]

I started to download the ome.tiff from your public OMERO but then realised it was 141 GB, so I don't even have space on my laptop to download it, and not to convert it.

That's a bottleneck 😅

The ngff copy on your s3 is not public is it?

Not yet, but I started a procedure to make it public 🤞

Or if you have a smaller example that is possible to download?

Unfortunatly I don't have a smaller exemple...

but if it can help, here is the METADATA.ome.xml

Cheers

R

[imagejan]

@romainGuiet wrote:

using the ngff.converter

So this might be related: glencoesoftware/NGFF-Converter#79

[will-moore]

@imagejan - Thanks, yes - if the omero metadata isn't being set, that would explain the lack of channel metadata.