ome-zarr-py/pyproject.toml at master · ome/ome-zarr-py · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
[build-system]
requires = [
    "setuptools>=77.0.3",
    "setuptools-scm>=8.0",
]
build-backend = "setuptools.build_meta"

[project]
name = "ome-zarr"
readme = "README.rst"
dynamic = ["version"]
description="Implementation of images in Zarr files."

license = "BSD-2-Clause"
license-files = ["LICENSE"]

requires-python = ">3.10"

dependencies = [
    "numpy",
    "dask>=2025.12.0, <=2026.1.1",
    "zarr>=3.0.0",
    "fsspec[s3]>=0.8,!=2021.07.0,!=2023.9.0",
    "aiohttp",
    "requests",
    "scikit-image>=0.19.0",
    "toolz",
    "rangehttpserver",
    "Deprecated",
]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Developers",
    "Intended Audience :: Science/Research",
    "Topic :: Software Development :: Libraries :: Python Modules",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3",
    "Operating System :: OS Independent",
]

authors = [
    {name = "The Open Microscopy Team"},
]

[project.entry-points."console_scripts"]
ome_zarr = "ome_zarr.cli:main"

[dependency-groups]
tests = [
    "pytest",
]

[project.urls]
Documentation = "https://ome-zarr.readthedocs.io"
Repository = "https://github.com/ome/ome-zarr-py"
Changelog = "https://github.com/ome/ome-zarr-py/blob/master/CHANGELOG.md"

[tool.ruff.lint]
extend-select = [
    "S",    # flake8-bandit
    "BLE",  # flake8-blind-except
    "B",    # flake8-bugbear
    "A",    # flake8-builtins
    "C4",   # flake8-comprehensions
    "ISC",  # flake8-implicit-str-concat
    "LOG",  # flake8-logging
    "G",    # flake8-logging-format
    "PIE",  # flake8-pie
    "PYI",  # flake8-pyi
    "SIM",  # flake8-simplify
    "TID",  # flake8-tidy-imports
    "FLY",  # flynt
    "I",    # isort
    "PERF", # Perflint
    # "D",  # pydocstyle  # FIXME
    "PGH",  # pygrep-hooks
    "PLE",  # Pylint Error
    "PLR",  # Pylint Refactor
    "PLW",  # Pylint Warning
    "UP",   # pyupgrade
    "FURB", # refurb
    "RUF",  # Ruff-specific rules
]

ignore = [
    "S101",    # assert
    "S311",    # suspicious-non-cryptographic-random-usage
    "S314",    # suspicious-xml-element-tree-usage  # FIXME
    "B007",    # unused-loop-control-variable
    "B008",    # function-call-in-default-argument  # FIXME
    "B011",    # assert-false
    "B024",    # abstract-base-class-without-abstract-method  # FIXME
    "B028",    # no-explicit-stacklevel
    "B905",    # zip-without-explicit-strict
    "C408",    # unnecessary-collection-call
    "SIM108",  # if-else-block-instead-of-if-exp
    "PERF203", # try-except-in-loop
    "PLR09",   # too-many-...
    "PLR2004", # magic-value-comparison
    "PLW1641", # eq-without-hash  # FIXME
    "RUF005",  # collection-literal-concatenation
]

[tool.ruff.lint.extend-per-file-ignores]
"ome_zarr/csv.py" = ["A005"]
"ome_zarr/io.py" = ["A005"]
"ome_zarr/types.py" = ["A005"]
"tests/*.py" = ["SIM201", "D"]

[tool.setuptools]
packages = ["ome_zarr"]
py-modules = ["ome_zarr"]

[tool.setuptools_scm]
version_file = "ome_zarr/_version.py"