From 1fcbc7a6f19c38a64dc4068fe0ed14039c01075a Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 4 Aug 2025 20:30:40 +0000
Subject: [PATCH 1/3] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.9.10 → v0.12.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.9.10...v0.12.7)
- [github.com/psf/black: 24.10.0 → 25.1.0](https://github.com/psf/black/compare/24.10.0...25.1.0)
- [github.com/pre-commit/mirrors-mypy: v1.13.0 → v1.17.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.13.0...v1.17.1)
- [github.com/adrienverge/yamllint.git: v1.35.1 → v1.37.1](https://github.com/adrienverge/yamllint.git/compare/v1.35.1...v1.37.1)
- [github.com/codespell-project/codespell: v2.3.0 → v2.4.1](https://github.com/codespell-project/codespell/compare/v2.3.0...v2.4.1)
---
 .pre-commit-config.yaml | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index dce7f3eb..32b6f98d 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -22,29 +22,29 @@ repos:
           - --autofix
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.9.10
+    rev: v0.12.7
     hooks:
     - id: ruff
       args: ["--fix", "--show-fixes"]
 
   - repo: https://github.com/psf/black
-    rev: 24.10.0
+    rev: 25.1.0
     hooks:
       - id: black
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.13.0
+    rev: v1.17.1
     hooks:
       - id: mypy
         args: [--config-file=mypy.ini]
 
   - repo: https://github.com/adrienverge/yamllint.git
-    rev: v1.35.1
+    rev: v1.37.1
     hooks:
       - id: yamllint
         args: [--config-data=relaxed]
 
   - repo: https://github.com/codespell-project/codespell
-    rev: v2.3.0
+    rev: v2.4.1
     hooks:
       - id: codespell

From fc7ed393c02ceb06119231371a39f2fda6d1b5df Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 4 Aug 2025 20:31:01 +0000
Subject: [PATCH 2/3] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 ome_zarr/axes.py | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/ome_zarr/axes.py b/ome_zarr/axes.py
index ac55d896..360fe65f 100644
--- a/ome_zarr/axes.py
+++ b/ome_zarr/axes.py
@@ -1,5 +1,4 @@
-"""Axes class for validating and transforming axes
-"""
+"""Axes class for validating and transforming axes"""
 
 from typing import Any
 

From 2939412977cf0104e93caa95912b1743936b5f56 Mon Sep 17 00:00:00 2001
From: Josh Moore <josh@openmicroscopy.org>
Date: Thu, 7 Aug 2025 10:25:48 +0200
Subject: [PATCH 3/3] Fix mypy error

```
ome_zarr/csv.py:79: error: Invalid index type "int | None" for "list[str]"; expected type "SupportsIndex"  [index]
Found 1 error in 1 file (checked 26 source files)
```
---
 ome_zarr/csv.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/ome_zarr/csv.py b/ome_zarr/csv.py
index 6cea603d..bea23095 100644
--- a/ome_zarr/csv.py
+++ b/ome_zarr/csv.py
@@ -59,7 +59,7 @@ def csv_to_zarr(
             cols_types_by_name[col_name_type] = "s"
 
     csv_columns = None
-    id_column = None
+    id_column: int
 
     props_by_id: dict[str | int, dict] = {}