omero-marshal/omero_marshal/encode/encoders/annotation.py at b8561a3b7a9202361a736d64cd01cf75a3d11714 · ome/omero-marshal · GitHub

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#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (c) 2015 Glencoe Software, Inc. All rights reserved.
#
# This software is distributed under the terms described by the LICENCE file
# you can find at the root of the distribution bundle.
# If the file is missing please request a copy by contacting
# jason@glencoesoftware.com.
#

from ... import SCHEMA_VERSION
from .. import Encoder
from omero.model import Annotation


class Annotation201501Encoder(Encoder):
    '''
    Annotation
        BasicAnnotation
            BooleanAnnotation
                BooleanAnnotationI
            NumericAnnotation
                DoubleAnnotation
                    DoubleAnnotationI
                LongAnnotation
                    LongAnnotationI
            TermAnnotation
                TermAnnotationI
            TimestampAnnotation
                TimestampAnnotationI
        ListAnnotation
            ListAnnotationI
        MapAnnotation
            MapAnnotationI
        TextAnnotation
            CommentAnnotation
                CommentAnnotationI
            TagAnnotation
                TagAnnotationI
            XmlAnnotation
                XmlAnnotationI
        TypeAnnotation
            FileAnnotation
                FileAnnotationI
    '''

    TYPE = 'http://www.openmicroscopy.org/Schemas/SA/2015-01#Annotation'

    def encode(self, obj, include_context=None):
        v = super(Annotation201501Encoder, self).encode(obj, include_context)
        self.set_if_not_none(v, 'Description', obj.description)
        self.set_if_not_none(v, 'Namespace', obj.ns)
        return v


class Annotation201606Encoder(Annotation201501Encoder):

    TYPE = 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Annotation'


class Annotatable201501Encoder(Encoder):

    TYPE = 'http://www.openmicroscopy.org/Schemas/SA/2015-01#AnnotationRef'

    def encode(self, obj, include_context=None):
        v = super(Annotatable201501Encoder, self).encode(obj, include_context)
        if obj.isAnnotationLinksLoaded() and obj.sizeOfAnnotationLinks() > 0:
            annotations = list()
            for annotation_link in obj.copyAnnotationLinks():
                annotation = annotation_link.child
                annotation_encoder = self.ctx.get_encoder(annotation.__class__)
                annotations.append(
                    annotation_encoder.encode(annotation, False)
                )
            v['Annotations'] = annotations
        return v


class Annotatable201606Encoder(Annotatable201501Encoder):

    TYPE = 'http://www.openmicroscopy.org/Schemas/OME/2016-06#AnnotationRef'


if SCHEMA_VERSION == '2015-01':
    encoder = (Annotation, Annotation201501Encoder)
    AnnotatableEncoder = Annotatable201501Encoder
elif SCHEMA_VERSION == '2016-06':
    encoder = (Annotation, Annotation201606Encoder)
    AnnotatableEncoder = Annotatable201606Encoder
AnnotationEncoder = encoder[1]