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update db schema version
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5 files changed

+9
-4
lines changed

5 files changed

+9
-4
lines changed

pom.xml

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@@ -31,7 +31,7 @@
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<frontend.artifactId>frontend-cbioportal</frontend.artifactId>
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<frontend.version>v6.2.2</frontend.version>
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<!-- THIS SHOULD BE KEPT IN SYNC TO VERSION IN CGDS.SQL -->
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<db.version>2.14.2</db.version>
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<db.version>2.14.3</db.version>
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<derived_table.version>1.0.0</derived_table.version>
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<!-- Version properties for dependencies that should have same version. -->

src/main/resources/db-scripts/cgds.sql

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@@ -743,4 +743,4 @@ CREATE TABLE `resource_study` (
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-- DB_SCHEMA_VERSION AND DERIVED_TABLE_SCHEMA_VERSION MUST BE KEPT IN SYNC WITH THE db.version AND derived_table.version PROPERTIES IN pom.xml
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INSERT INTO `info` (`DB_SCHEMA_VERSION`, `GENESET_VERSION`, `DERIVED_TABLE_SCHEMA_VERSION`)
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VALUES ('2.14.2', NULL, '1.0.0');
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VALUES ('2.14.3', NULL, '1.0.0');

src/main/resources/db-scripts/migration.sql

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@@ -65,6 +65,7 @@ ALTER TABLE `protein_array_target` MODIFY COLUMN `ENTREZ_GENE_ID` int(11) NOT NU
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ALTER TABLE `sanger_cancer_census` MODIFY COLUMN `ENTREZ_GENE_ID` int(11) NOT NULL;
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ALTER TABLE `gistic_to_gene` MODIFY COLUMN `ENTREZ_GENE_ID` int(11) NOT NULL;
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ALTER TABLE `cna_event` MODIFY COLUMN `ENTREZ_GENE_ID` int(11) NOT NULL;
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ALTER TABLE `cosmic_mutation` MODIFY COLUMN `ENTREZ_GENE_ID` int(11) NOT NULL;
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ALTER TABLE `mutation` MODIFY COLUMN `ENTREZ_GENE_ID` int(11) NOT NULL;
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ALTER TABLE `mutation` ADD KEY (`MUTATION_EVENT_ID`);
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ALTER TABLE `sample_profile` ADD KEY (`SAMPLE_ID`);
@@ -1072,3 +1073,7 @@ UPDATE `info` SET `DB_SCHEMA_VERSION`="2.14.1";
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##version: 2.14.2
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ALTER TABLE `resource_definition` ADD COLUMN `CUSTOM_METADATA` JSON;
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UPDATE `info` SET `DB_SCHEMA_VERSION`="2.14.2";
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##version: 2.14.3
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DROP TABLE IF EXISTS `cosmic_mutation`;
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UPDATE `info` SET `DB_SCHEMA_VERSION`="2.14.3";

src/test/resources/cgds-h2.sql

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@@ -737,4 +737,4 @@ CREATE TABLE `resource_study` (
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-- DB_SCHEMA_VERSION AND DERIVED_TABLE_SCHEMA_VERSION MUST BE KEPT IN SYNC WITH THE db.version AND derived_table.version PROPERTIES IN pom.xml
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INSERT INTO `info` (`DB_SCHEMA_VERSION`, `GENESET_VERSION`, `DERIVED_TABLE_SCHEMA_VERSION`)
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VALUES ('2.14.2', NULL, '1.0.0');
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VALUES ('2.14.3', NULL, '1.0.0');

src/test/resources/cgds.sql

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Original file line numberDiff line numberDiff line change
@@ -737,4 +737,4 @@ CREATE TABLE `resource_study` (
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-- DB_SCHEMA_VERSION AND DERIVED_TABLE_SCHEMA_VERSION MUST BE KEPT IN SYNC WITH THE db.version AND derived_table.version PROPERTIES IN pom.xml
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INSERT INTO `info` (`DB_SCHEMA_VERSION`, `GENESET_VERSION`, `DERIVED_TABLE_SCHEMA_VERSION`)
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VALUES ('2.14.2', NULL, '1.0.0');
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VALUES ('2.14.3', NULL, '1.0.0');

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