From a4d522cbf73d256f4f642e5b1b67ac1d4c9da0f2 Mon Sep 17 00:00:00 2001
From: Lukas Trippe <lkstrp@pm.me>
Date: Wed, 17 Jun 2026 10:29:14 +0200
Subject: [PATCH 01/22] fix: permissions for lockfile update action (#2205)

---
 .github/workflows/update-lockfile.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/update-lockfile.yaml b/.github/workflows/update-lockfile.yaml
index 9b9e17b07d..5cc7d46417 100644
--- a/.github/workflows/update-lockfile.yaml
+++ b/.github/workflows/update-lockfile.yaml
@@ -11,6 +11,7 @@ jobs:
     runs-on: ubuntu-latest
     permissions:
       contents: write
+      pull-requests: write
     defaults:
       run:
         shell: bash -l {0}

From 1f8d4a503ac9b348072cca9a6446926b452c091f Mon Sep 17 00:00:00 2001
From: Lukas Trippe <lkstrp@pm.me>
Date: Wed, 17 Jun 2026 14:26:15 +0200
Subject: [PATCH 02/22] fix: diff view for SARIF report (#2208)

---
 .github/workflows/security-scan.yaml | 13 ++++++++-----
 1 file changed, 8 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/security-scan.yaml b/.github/workflows/security-scan.yaml
index 910eb8eb7e..0893cd8c2f 100644
--- a/.github/workflows/security-scan.yaml
+++ b/.github/workflows/security-scan.yaml
@@ -45,12 +45,15 @@ jobs:
         add-cpes-if-none: true
         output-format: sarif
 
-    # Point alerts to pixi.lock so githubs path scoped PR check registers it
-    - name: Rewrite SARIF locations to pixi.lock
+    # Set uri=pixi.lock for a readable location, and fingerprint each alert by
+    # CVE id so code scanning matches against the master baseline by CVE, not line.
+    - name: Normalize SARIF (pixi.lock location + CVE fingerprint)
       run: |
-        jq '.runs[].results[].locations[].physicalLocation.artifactLocation.uri = "pixi.lock"' \
-          "${{ steps.scan.outputs.sarif }}" > rewritten.sarif
-        mv rewritten.sarif "${{ steps.scan.outputs.sarif }}"
+        jq '.runs[].results[] |= (
+              .locations[].physicalLocation.artifactLocation.uri = "pixi.lock"
+              | .partialFingerprints = {"grypeCve/v1": .ruleId}
+            )' "${{ steps.scan.outputs.sarif }}" > normalized.sarif
+        mv normalized.sarif "${{ steps.scan.outputs.sarif }}"
 
     - name: Upload SARIF
       if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository

From f124355cfa4987dbab3335dbdb22aa6de57b3ff6 Mon Sep 17 00:00:00 2001
From: Thomas Gilon <thomas.gilon@openenergytransition.org>
Date: Fri, 19 Jun 2026 12:30:08 +0200
Subject: [PATCH 03/22] fix: fix typo in rolling_horizon config of
 solve_network (#2213)

---
 scripts/solve_network.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scripts/solve_network.py b/scripts/solve_network.py
index 5d3b3fb8d7..cd627cc410 100644
--- a/scripts/solve_network.py
+++ b/scripts/solve_network.py
@@ -577,7 +577,7 @@ def prepare_network(
 
     # rolling horizon disables cyclic storage
     if rolling_horizon:
-        n.storage_units.state_of_charge_cyclic = False
+        n.storage_units.cyclic_state_of_charge = False
         n.storage_units.state_of_charge_initial = 0
         n.stores.e_cyclic = False
         n.stores.e_initial = 0

From 1363071968770be4d76a7d3b1e448a6d95398502 Mon Sep 17 00:00:00 2001
From: Thomas Gilon <thomas.gilon@openenergytransition.org>
Date: Tue, 23 Jun 2026 11:59:36 +0200
Subject: [PATCH 04/22] fix: fix TYNDP typos (#2214)

---
 rules/retrieve.smk | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/rules/retrieve.smk b/rules/retrieve.smk
index cde7f32151..3d6852a67d 100755
--- a/rules/retrieve.smk
+++ b/rules/retrieve.smk
@@ -1213,17 +1213,17 @@ if (
             copy2(input["xlsx"], output["xlsx"])
 
 
-if (TYDNP_DATASET := dataset_version("tyndp"))["source"] in ["primary", "archive"]:
+if (TYNDP_DATASET := dataset_version("tyndp"))["source"] in ["primary", "archive"]:
 
     rule retrieve_tyndp:
         input:
-            line_data=storage(TYDNP_DATASET["url"] + "/Line-data.zip"),
-            nodes=storage(TYDNP_DATASET["url"] + "/Nodes.zip"),
+            line_data=storage(TYNDP_DATASET["url"] + "/Line-data.zip"),
+            nodes=storage(TYNDP_DATASET["url"] + "/Nodes.zip"),
         output:
-            line_data_zip=f"{TYDNP_DATASET['folder']}/Line-data.zip",
-            nodes_zip=f"{TYDNP_DATASET['folder']}/Nodes.zip",
-            reference_grid=f"{TYDNP_DATASET['folder']}/Line data/ReferenceGrid_Electricity.xlsx",
-            nodes=f"{TYDNP_DATASET['folder']}/Nodes/LIST OF NODES.xlsx",
+            line_data_zip=f"{TYNDP_DATASET['folder']}/Line-data.zip",
+            nodes_zip=f"{TYNDP_DATASET['folder']}/Nodes.zip",
+            reference_grid=f"{TYNDP_DATASET['folder']}/Line data/ReferenceGrid_Electricity.xlsx",
+            nodes=f"{TYNDP_DATASET['folder']}/Nodes/LIST OF NODES.xlsx",
         log:
             "logs/retrieve_tyndp.log",
         message:

From a2354991f25c3a388c14203cec04fecad012ac2e Mon Sep 17 00:00:00 2001
From: Michael Lindner <michaellindner@posteo.de>
Date: Tue, 23 Jun 2026 12:28:54 +0200
Subject: [PATCH 05/22] Fix: correctly rename nice_names when clustering heat
 buses (#2203)

* fix: rename nice_names as well when clustering heat buses

* add note
---
 doc/release_notes.md              | 2 ++
 scripts/prepare_sector_network.py | 6 +++++-
 2 files changed, 7 insertions(+), 1 deletion(-)

diff --git a/doc/release_notes.md b/doc/release_notes.md
index 101ab4a150..003304fa86 100644
--- a/doc/release_notes.md
+++ b/doc/release_notes.md
@@ -5,6 +5,8 @@
 
 <!-- Upcoming Release -->
 <!-- ================= -->
+* Fix: When clustering heat buses, in myopic optimization, and afterwards viewing the heat energy_balance with n.statistics (and with nice_names=True, which is the default), some assets would still be displayed as belonging to "residential" or "services" sectors, because the nice_names still lingered from the unclustered version. This has been fixed.
+
 * Security: SBOM security scan included in CI.
 
 * Security: Development dependencies (pre-commit, pylint, jupyter, etc.) moved to `dev` `pixi` environment.
diff --git a/scripts/prepare_sector_network.py b/scripts/prepare_sector_network.py
index 1f84f038b4..217348245f 100755
--- a/scripts/prepare_sector_network.py
+++ b/scripts/prepare_sector_network.py
@@ -5759,7 +5759,11 @@ def define_clustering(attributes, aggregate_dict):
         if c.static.empty:
             continue
         df = c.static
-        cols = df.columns[df.columns.str.contains("bus") | (df.columns == "carrier")]
+        cols = df.columns[
+            df.columns.str.contains("bus")
+            | (df.columns == "carrier")
+            | (df.columns == "nice_name")
+        ]
 
         # rename columns and index
         df[cols] = df[cols].apply(

From 12610b33e26ab8ce16460e32eb42804628a2d4f0 Mon Sep 17 00:00:00 2001
From: Lukas Trippe <lkstrp@pm.me>
Date: Tue, 23 Jun 2026 12:31:42 +0200
Subject: [PATCH 06/22] fix: keep unset p_set as NaN in cluster_heat_buses
 aggregation (#2202)

* fix: keep unset p_set as NaN in cluster_heat_buses aggregation

* fix: drop redundant numeric_only

---------

Co-authored-by: Fabian Neumann <fabian.neumann@outlook.de>
---
 doc/release_notes.md              |  1 +
 scripts/prepare_sector_network.py | 16 ++++++++++++----
 2 files changed, 13 insertions(+), 4 deletions(-)

diff --git a/doc/release_notes.md b/doc/release_notes.md
index 003304fa86..f9c0a75ea9 100644
--- a/doc/release_notes.md
+++ b/doc/release_notes.md
@@ -5,6 +5,7 @@
 
 <!-- Upcoming Release -->
 <!-- ================= -->
+* Fix: Keep unset `p_set` (NaN) as NaN when aggregating components in `cluster_heat_buses`, required for [PyPSA#1703](https://github.com/PyPSA/PyPSA/pull/1703).
 * Fix: When clustering heat buses, in myopic optimization, and afterwards viewing the heat energy_balance with n.statistics (and with nice_names=True, which is the default), some assets would still be displayed as belonging to "residential" or "services" sectors, because the nice_names still lingered from the unclustered version. This has been fixed.
 
 * Security: SBOM security scan included in CI.
diff --git a/scripts/prepare_sector_network.py b/scripts/prepare_sector_network.py
index 217348245f..91efa0bc0d 100755
--- a/scripts/prepare_sector_network.py
+++ b/scripts/prepare_sector_network.py
@@ -5695,6 +5695,14 @@ def limit_individual_line_extension(n, maxext):
     n.links.loc[hvdc, "p_nom_max"] = n.links.loc[hvdc, "p_nom"] + maxext
 
 
+def _sum_keep_na(s):
+    """
+    Sum keeping all-NaN groups as NaN instead of collapsing them to 0.
+
+    """
+    return s.sum(min_count=1)
+
+
 aggregate_dict = {
     "p_nom": pd.Series.sum,
     "s_nom": pd.Series.sum,
@@ -5709,13 +5717,13 @@ def limit_individual_line_extension(n, maxext):
     "v_ang_max": "min",
     "terrain_factor": "mean",
     "num_parallel": "sum",
-    "p_set": "sum",
+    "p_set": _sum_keep_na,
     "e_initial": "sum",
     "e_nom": pd.Series.sum,
     "e_nom_max": pd.Series.sum,
     "e_nom_min": pd.Series.sum,
     "state_of_charge_initial": "sum",
-    "state_of_charge_set": "sum",
+    "state_of_charge_set": _sum_keep_na,
     "inflow": "sum",
     "p_max_pu": "first",
     "x": "mean",
@@ -5777,7 +5785,7 @@ def define_clustering(attributes, aggregate_dict):
         # cluster heat nodes
         # static dataframe
         agg = define_clustering(df.columns, aggregate_dict)
-        df = df.groupby(level=0).agg(agg, numeric_only=False)
+        df = df.groupby(level=0).agg(agg)
         # time-varying data
         pnl = c.dynamic
         agg = define_clustering(pd.Index(pnl.keys()), aggregate_dict)
@@ -5786,7 +5794,7 @@ def define_clustering(attributes, aggregate_dict):
             def renamer(s):
                 return s.replace("residential ", "").replace("services ", "")
 
-            pnl[k] = pnl[k].T.groupby(renamer).agg(agg[k], numeric_only=False).T
+            pnl[k] = pnl[k].T.groupby(renamer).agg(agg[k]).T
 
         # remove unclustered assets of service/residential
         to_drop = c.static.index.difference(df.index)

From 9ec7b6546ad6d39082827fef45c492973119e93a Mon Sep 17 00:00:00 2001
From: Thomas Gilon <thomas.gilon@openenergytransition.org>
Date: Tue, 23 Jun 2026 17:01:37 +0200
Subject: [PATCH 07/22] doc: disable root toc entry (#2216)

* doc: disable root toc entry

* doc: add release note
---
 doc/release_notes.md | 2 ++
 mkdocs.yml           | 1 +
 2 files changed, 3 insertions(+)

diff --git a/doc/release_notes.md b/doc/release_notes.md
index f9c0a75ea9..933d5c2c46 100644
--- a/doc/release_notes.md
+++ b/doc/release_notes.md
@@ -39,6 +39,8 @@
 
 - Added solar rooftop ratio setting to `add_existing_baseyear` for heuristically splitting existing solar capacity between rooftop and utility-scale (defaults to a 50:50 split).
 
+- doc: Disable root TOC entries in order to declutter the table of contents for the rules overview ([2216](https://github.com/PyPSA/pypsa-eur/pull/2216)).
+
 ## PyPSA-Eur v2026.02.0 (18th February 2026)
 
 **Features**
diff --git a/mkdocs.yml b/mkdocs.yml
index 8093d92480..f6cb222763 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -95,6 +95,7 @@ plugins:
           show_source: false
           show_root_heading: false
           show_root_full_path: false
+          show_root_toc_entry: false
           members: false
           allow_inspection: true
         inventories:

From cb1149978b197b36d2f333b7af09063902f9f4f5 Mon Sep 17 00:00:00 2001
From: Bryn Pickering <17178478+brynpickering@users.noreply.github.com>
Date: Sun, 28 Jun 2026 14:27:29 +0200
Subject: [PATCH 08/22] Make `default_target` configurable (#2218)

---
 Snakefile                            |  6 +++++-
 config/config.default.yaml           |  1 +
 config/schema.default.json           | 24 ++++++++++++++++++++++++
 doc/release_notes.md                 |  3 +++
 scripts/lib/validation/config/run.py |  8 ++++++++
 5 files changed, 41 insertions(+), 1 deletion(-)

diff --git a/Snakefile b/Snakefile
index 5bca217a60..420fa9d397 100644
--- a/Snakefile
+++ b/Snakefile
@@ -59,6 +59,7 @@ resources = path_provider("resources/", RDIR, shared_resources, exclude_from_sha
 scripts = script_path_provider(Path(workflow.snakefile).parent)
 
 RESULTS = "results/" + RDIR
+workflow.default_target = config["run"]["default_target_rule"]
 
 
 localrules:
@@ -104,7 +105,6 @@ if config["foresight"] == "perfect":
 
 
 rule all:
-    default_target: True
     input:
         expand(RESULTS + "graphs/costs.pdf", run=config["run"]["name"]),
         expand(resources("maps/power-network.pdf"), run=config["run"]["name"]),
@@ -292,6 +292,8 @@ rule rulegraph:
         pdf=resources("dag_rulegraph.pdf"),
         png=resources("dag_rulegraph.png"),
         svg=resources("dag_rulegraph.svg"),
+    params:
+        default_target=workflow.default_target,  # track default target to ensure rule is re-triggered
     message:
         "Creating RULEGRAPH dag in multiple formats using the final configuration."
     shell:
@@ -329,6 +331,8 @@ rule filegraph:
         pdf=resources("dag_filegraph.pdf"),
         png=resources("dag_filegraph.png"),
         svg=resources("dag_filegraph.svg"),
+    params:
+        default_target=workflow.default_target,  # track default target to ensure rule is re-triggered
     message:
         "Creating FILEGRAPH dag in multiple formats using the final configuration."
     shell:
diff --git a/config/config.default.yaml b/config/config.default.yaml
index eee27b2fb3..c4b5dc12e1 100644
--- a/config/config.default.yaml
+++ b/config/config.default.yaml
@@ -30,6 +30,7 @@ run:
     policy: false
     exclude: []
   use_shadow_directory: false
+  default_target_rule: all
 
 # docs in https://pypsa-eur.readthedocs.io/en/latest/configuration.html#foresight
 foresight: overnight
diff --git a/config/schema.default.json b/config/schema.default.json
index e03c0b0571..b41166ce95 100644
--- a/config/schema.default.json
+++ b/config/schema.default.json
@@ -4077,6 +4077,18 @@
             true
           ],
           "type": "boolean"
+        },
+        "default_target_rule": {
+          "anyOf": [
+            {
+              "type": "string"
+            },
+            {
+              "type": "null"
+            }
+          ],
+          "default": "all",
+          "description": "Default target rule for snakemake. This is the default rule that will be executed if no other rule is specified. If set to ``None``, snakemake will use its default behavior and execute the first rule in the Snakefile. NOTE: This value will be overwritten by any reference to `default_target` made in a specific rule."
         }
       }
     },
@@ -8328,6 +8340,18 @@
             true
           ],
           "type": "boolean"
+        },
+        "default_target_rule": {
+          "anyOf": [
+            {
+              "type": "string"
+            },
+            {
+              "type": "null"
+            }
+          ],
+          "default": "all",
+          "description": "Default target rule for snakemake. This is the default rule that will be executed if no other rule is specified. If set to ``None``, snakemake will use its default behavior and execute the first rule in the Snakefile. NOTE: This value will be overwritten by any reference to `default_target` made in a specific rule."
         }
       }
     },
diff --git a/doc/release_notes.md b/doc/release_notes.md
index 933d5c2c46..8910e9ff9f 100644
--- a/doc/release_notes.md
+++ b/doc/release_notes.md
@@ -5,7 +5,10 @@
 
 <!-- Upcoming Release -->
 <!-- ================= -->
+* feat: Make the default target rule configurable (defaults to "all" for backwards compatibility)
+
 * Fix: Keep unset `p_set` (NaN) as NaN when aggregating components in `cluster_heat_buses`, required for [PyPSA#1703](https://github.com/PyPSA/PyPSA/pull/1703).
+
 * Fix: When clustering heat buses, in myopic optimization, and afterwards viewing the heat energy_balance with n.statistics (and with nice_names=True, which is the default), some assets would still be displayed as belonging to "residential" or "services" sectors, because the nice_names still lingered from the unclustered version. This has been fixed.
 
 * Security: SBOM security scan included in CI.
diff --git a/scripts/lib/validation/config/run.py b/scripts/lib/validation/config/run.py
index f0731c3b3c..57ffa3399a 100644
--- a/scripts/lib/validation/config/run.py
+++ b/scripts/lib/validation/config/run.py
@@ -73,3 +73,11 @@ class RunConfig(ConfigModel):
         description="Set to ``true`` (default) if snakemake shadow directories (``shallow``) should be used. Set to ``false`` if problems occur.",
         examples=[True],
     )
+
+    default_target_rule: str | None = Field(
+        "all",
+        description="Default target rule for snakemake. "
+        "This is the default rule that will be executed if no other rule is specified. "
+        "If set to ``None``, snakemake will use its default behavior and execute the first rule in the Snakefile. "
+        "NOTE: This value will be overwritten by any reference to `default_target` made in a specific rule.",
+    )

From 7537e68a31ebc18ad266c126d83528fed08081aa Mon Sep 17 00:00:00 2001
From: Fabian Neumann <fabian.neumann@outlook.de>
Date: Sun, 28 Jun 2026 14:28:01 +0200
Subject: [PATCH 09/22] add AI contribution guidelines (#2215)

---
 .github/ISSUE_TEMPLATE/bug_report.yaml    |  2 ++
 .github/ISSUE_TEMPLATE/feature_request.md |  2 ++
 .github/pull_request_template.md          |  1 +
 doc/contributing.md                       | 17 +++++++++++++++++
 doc/release_notes.md                      |  2 ++
 5 files changed, 24 insertions(+)

diff --git a/.github/ISSUE_TEMPLATE/bug_report.yaml b/.github/ISSUE_TEMPLATE/bug_report.yaml
index 957b5768b7..72056cb504 100644
--- a/.github/ISSUE_TEMPLATE/bug_report.yaml
+++ b/.github/ISSUE_TEMPLATE/bug_report.yaml
@@ -10,6 +10,8 @@ body:
       Thanks for taking the time to fill out this bug report!
       Please do not post usage questions here. Ask them on the [PyPSA Discord server](https://discord.gg/AnuJBk23FU).
 
+      Please write this issue description yourself. Any potentially verbose AI-generated content should be marked.
+
 - type: checkboxes
   id: checks
   attributes:
diff --git a/.github/ISSUE_TEMPLATE/feature_request.md b/.github/ISSUE_TEMPLATE/feature_request.md
index e4429682a9..b102da3cd0 100644
--- a/.github/ISSUE_TEMPLATE/feature_request.md
+++ b/.github/ISSUE_TEMPLATE/feature_request.md
@@ -10,6 +10,8 @@ assignees: ''
 
 <!-- Please do not post usage questions here. Ask them on the PyPSA Discord server: https://discord.gg/AnuJBk23FU -->
 
+<!-- Please write this issue description yourself. Any potentially verbose AI-generated content should be marked.-->
+
 ## Describe the feature you'd like to see
 
 *Please give a clear and concise description and provide context why the feature would be useful.*
diff --git a/.github/pull_request_template.md b/.github/pull_request_template.md
index 178a9d4045..0654d2b907 100644
--- a/.github/pull_request_template.md
+++ b/.github/pull_request_template.md
@@ -9,6 +9,7 @@ Closes # (if applicable).
 - [ ] Changes are tested locally and behave as expected.
 - [ ] Code and workflow changes are documented.
 - [ ] A release note entry is added to `doc/release_notes.md`.
+- [ ] The description is human-written and any AI-generated content is marked.
 
 **If applicable:**
 - [ ] Changes in configuration options are reflected in `scripts/lib/validation`.
diff --git a/doc/contributing.md b/doc/contributing.md
index 495f216831..1f45cc67cd 100644
--- a/doc/contributing.md
+++ b/doc/contributing.md
@@ -45,3 +45,20 @@ We strive to keep documentation useful and up to date for all PyPSA users. If yo
 3. Compile your changes by running `pixi run build-docs site` from the project root.
    You can also preview live with `mkdocs serve`. HTML files to review can be found under `site/`.
 4. Contribute your documentation in a pull request ([here is a guide](https://help.github.com/en/articles/about-pull-requests)).
+
+
+## AI-based Contributions
+
+To handle the influx of AI-assisted contributions and protect maintainer time, we have established some basic principles.
+
+We do not impose general restrictions on the use of AI for contributions.
+But we require that all contributions, whether AI-assisted or not, adhere to the same standards of quality, relevance, and maintainability.
+This boils down to:
+
+1. PR and issue descriptions should read like you wrote them. Keep them concise and human. Any potentially verbose AI-generated content should be marked, e.g. in a collapsed `<details>` block. Please don't mix both.
+2. Take responsibility for the content and quality of your contribution, even if you used AI.
+3. Keep the code simple. AI tools often produce verbose or over-engineered code. Review and trim it back before submitting.
+4. Before you submit large contributions, coordinate with the maintainers to ensure they align with the project's goals and roadmap.
+5. Minimize the review burden on us by keeping your contributions focused, don't solve multiple tangential issues in one PR.
+
+We may close AI-based contributions without further review if we consider them to bind up excessive maintainer time.
diff --git a/doc/release_notes.md b/doc/release_notes.md
index 8910e9ff9f..84124f7c2a 100644
--- a/doc/release_notes.md
+++ b/doc/release_notes.md
@@ -13,6 +13,8 @@
 
 * Security: SBOM security scan included in CI.
 
+* Updated contribution guidelines outline what we expect from AI-based contributions.
+
 * Security: Development dependencies (pre-commit, pylint, jupyter, etc.) moved to `dev` `pixi` environment.
   Removed 62 CVEs from `default` environment.
 

From d8ac20b6e4b4b0e0926e8ecf932dafb33f946afc Mon Sep 17 00:00:00 2001
From: Martha Frysztacki <martha.frysztacki@gmail.com>
Date: Sun, 28 Jun 2026 14:29:01 +0200
Subject: [PATCH 10/22] don't remove DC buses in sector network (#2199)

* don't remove DC buses in sector network

* bump DC nodes to low voltage, too

* same bugfix in myopic code

* restore master branch

* add TODO note

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

---------

Co-authored-by: Bobby Xiong <36541459+bobbyxng@users.noreply.github.com>
Co-authored-by: bobbyxng <bobbyxng@gmail.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Fabian Neumann <fabian.neumann@outlook.de>
---
 scripts/simplify_network.py | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/scripts/simplify_network.py b/scripts/simplify_network.py
index a626b14b82..f94c6df043 100644
--- a/scripts/simplify_network.py
+++ b/scripts/simplify_network.py
@@ -440,6 +440,13 @@ def remove_converters(n: pypsa.Network) -> pypsa.Network:
     busmaps.append(converter_map)
 
     n, simplify_links_map = simplify_links(n, params.p_max_pu, params.p_min_pu)
+
+    # Rename all DC bus carriers to AC
+    # TODO: long-term, rename all aggregated AC and DC carriers to `electricity` to avoid confusion
+    is_dc_bus_carrier = n.buses["carrier"] == "DC"
+    logger.info(f"Simplifying {is_dc_bus_carrier.sum()} DC bus carriers to AC.")
+    n.buses.loc[is_dc_bus_carrier, "carrier"] = "AC"
+
     busmaps.append(simplify_links_map)
 
     if params.simplify_network["remove_stubs"]:

From 2550d9ccc9777c15d909da1814b7375192583120 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Stan=20B=C3=BCren?= <gustavgrunvaldt@gmail.com>
Date: Sun, 28 Jun 2026 15:30:29 +0300
Subject: [PATCH 11/22] fix: resolve plotting crashes due to missing tech
 colors (#2211)

* fix: resolve plotting crashes due to missing tech colors

Fixes #2108. The plot summary and network mapping scripts crashed when
technology color keys were missing from the plotting configuration.

- Add missing 'heat dsm' color entry mapping
- Implement _get_tech_colors() in plot_summary.py to safely lookup colors with warnings
- Apply same safe color lookup and consistency logging to plot_power_network.py and plot_gas_network.py
- Add test suite covering regression and safe fallback lookups

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* refactor: address review feedback, revert fallback colors and implement fail-fast validator

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* test: import check_tech_colors directly and remove duplicates

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Fabian Neumann <fabian.neumann@outlook.de>
---
 config/plotting.default.yaml |  1 +
 doc/release_notes.md         |  1 +
 scripts/plot_summary.py      | 17 +++++++++++++++++
 test/test_plot_summary.py    | 26 ++++++++++++++++++++++++++
 4 files changed, 45 insertions(+)
 create mode 100644 test/test_plot_summary.py

diff --git a/config/plotting.default.yaml b/config/plotting.default.yaml
index a2d7405123..e5156d485a 100644
--- a/config/plotting.default.yaml
+++ b/config/plotting.default.yaml
@@ -586,6 +586,7 @@ plotting:
     heat demand: '#cc1f1f'
     rural heat: '#ff5c5c'
     rural heat dsm: '#ff5c5c'
+    heat dsm: '#ff5c5c'
     residential rural heat: '#ff7c7c'
     services rural heat: '#ff9c9c'
     central heat: '#cc1f1f'
diff --git a/doc/release_notes.md b/doc/release_notes.md
index 84124f7c2a..2a3e909478 100644
--- a/doc/release_notes.md
+++ b/doc/release_notes.md
@@ -5,6 +5,7 @@
 
 <!-- Upcoming Release -->
 <!-- ================= -->
+* Fix: Resolve plotting crashes from missing `tech_colors` entries by adding `heat dsm` color and implementing upfront validation for missing keys in `plot_summary.py` ([#2108](https://github.com/PyPSA/pypsa-eur/issues/2108)).
 * feat: Make the default target rule configurable (defaults to "all" for backwards compatibility)
 
 * Fix: Keep unset `p_set` (NaN) as NaN when aggregating components in `cluster_heat_buses`, required for [PyPSA#1703](https://github.com/PyPSA/PyPSA/pull/1703).
diff --git a/scripts/plot_summary.py b/scripts/plot_summary.py
index 8cda4a6f02..08cb4b0faa 100644
--- a/scripts/plot_summary.py
+++ b/scripts/plot_summary.py
@@ -61,6 +61,17 @@
 )
 
 
+def check_tech_colors(tech_colors, keys):
+    """
+    Check if all keys exist in tech_colors mapping, otherwise raise KeyError.
+    """
+    missing = [k for k in keys if k not in tech_colors]
+    if missing:
+        raise KeyError(
+            f"The following technology carrier(s) do not have a defined color in the plotting configuration: {missing}"
+        )
+
+
 def plot_costs():
     cost_df = pd.read_csv(
         snakemake.input.costs, index_col=list(range(3)), header=list(range(n_header))
@@ -90,6 +101,8 @@ def plot_costs():
 
     # new_columns = df.sum().sort_values().index
 
+    check_tech_colors(snakemake.params.plotting["tech_colors"], new_index)
+
     fig, ax = plt.subplots(figsize=(12, 8))
 
     df.loc[new_index].T.plot(
@@ -157,6 +170,8 @@ def plot_energy():
 
     # new_columns = df.columns.sort_values()
 
+    check_tech_colors(snakemake.params.plotting["tech_colors"], new_index)
+
     fig, ax = plt.subplots(figsize=(12, 8))
 
     logger.debug(df.loc[new_index])
@@ -237,6 +252,8 @@ def plot_balances():
 
         new_columns = df.columns.sort_values()
 
+        check_tech_colors(snakemake.params.plotting["tech_colors"], new_index)
+
         fig, ax = plt.subplots(figsize=(12, 8))
 
         df.loc[new_index, new_columns].T.plot(
diff --git a/test/test_plot_summary.py b/test/test_plot_summary.py
new file mode 100644
index 0000000000..4282dffc3c
--- /dev/null
+++ b/test/test_plot_summary.py
@@ -0,0 +1,26 @@
+# SPDX-FileCopyrightText: Contributors to PyPSA-Eur <https://github.com/pypsa/pypsa-eur>
+#
+# SPDX-License-Identifier: MIT
+"""
+Tests for scripts/plot_summary.py color matching and tech renaming.
+"""
+
+import pytest
+
+from scripts.plot_summary import check_tech_colors
+
+
+def test_check_tech_colors_all_present():
+    """Verify that no KeyError is raised when all keys exist in tech_colors."""
+    tech_colors = {"onwind": "#235ebc", "solar": "#f9d002"}
+    keys = ["onwind", "solar"]
+    check_tech_colors(tech_colors, keys)
+
+
+def test_check_tech_colors_missing_raises():
+    """Verify that check_tech_colors raises a KeyError detailing the missing keys."""
+    tech_colors = {"onwind": "#235ebc"}
+    keys = ["onwind", "unknown_carrier"]
+    with pytest.raises(KeyError) as excinfo:
+        check_tech_colors(tech_colors, keys)
+    assert "unknown_carrier" in str(excinfo.value)

From 76836f7b6daa0e11ec12773a526638dcf9d1715e Mon Sep 17 00:00:00 2001
From: Fabian Neumann <fabian.neumann@outlook.de>
Date: Sun, 28 Jun 2026 14:43:44 +0200
Subject: [PATCH 12/22] add highs-hipo solver settings set (#2180)

Co-authored-by: Lukas Trippe <lkstrp@pm.me>
---
 config/config.default.yaml               | 7 +++++++
 scripts/lib/validation/config/solving.py | 8 ++++++++
 2 files changed, 15 insertions(+)

diff --git a/config/config.default.yaml b/config/config.default.yaml
index c4b5dc12e1..c637a0514e 100644
--- a/config/config.default.yaml
+++ b/config/config.default.yaml
@@ -1213,6 +1213,13 @@ solving:
       primal_feasibility_tolerance: 1.0e-05
       dual_feasibility_tolerance: 1.0e-05
       random_seed: 123
+    "highs-hipo":
+      solver: hipo
+      parallel: 'on'
+      primal_feasibility_tolerance: 1.0e-05
+      dual_feasibility_tolerance: 1.0e-05
+      random_seed: 123
+      run_crossover: 'off'
     "gurobi-default":
       threads: 32
       method: 2
diff --git a/scripts/lib/validation/config/solving.py b/scripts/lib/validation/config/solving.py
index 878e381a3a..76d6eaf2e1 100644
--- a/scripts/lib/validation/config/solving.py
+++ b/scripts/lib/validation/config/solving.py
@@ -341,6 +341,14 @@ class SolvingConfig(BaseModel):
                 "dual_feasibility_tolerance": 1e-5,
                 "random_seed": 123,
             },
+            "highs-hipo": {
+                "solver": "hipo",
+                "parallel": "on",
+                "primal_feasibility_tolerance": 1e-5,
+                "dual_feasibility_tolerance": 1e-5,
+                "random_seed": 123,
+                "run_crossover": "off",
+            },
             "gurobi-default": {
                 "threads": 32,
                 "method": 2,

From 8e2068fdb9c7e8165a9db0d81ca8e833c0f14dbc Mon Sep 17 00:00:00 2001
From: Fabian Hofmann <fab.hof@gmx.de>
Date: Sun, 28 Jun 2026 14:44:10 +0200
Subject: [PATCH 13/22] make build_ambient_ait_temp script thread-safe (#2197)

Co-authored-by: Fabian Neumann <fabian.neumann@outlook.de>
---
 scripts/build_ambient_air_temperature_yearly_average.py | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/scripts/build_ambient_air_temperature_yearly_average.py b/scripts/build_ambient_air_temperature_yearly_average.py
index 0f29113d14..c90bce19c9 100644
--- a/scripts/build_ambient_air_temperature_yearly_average.py
+++ b/scripts/build_ambient_air_temperature_yearly_average.py
@@ -70,7 +70,9 @@ def get_data_in_geometry(
     configure_logging(snakemake)
     set_scenario_config(snakemake)
 
-    ambient_temperature = xr.open_mfdataset(snakemake.input.cutout).temperature - 273.15
+    ambient_temperature = (
+        xr.open_mfdataset(snakemake.input.cutout, chunks="auto").temperature - 273.15
+    )
 
     # Load onshore regions
     regions_onshore = gpd.read_file(snakemake.input.regions_onshore)
@@ -100,6 +102,6 @@ def get_data_in_geometry(
     )
 
     # Save the result
-    average_temperature_by_region.to_netcdf(
-        snakemake.output.average_ambient_air_temperature
+    average_temperature_by_region.compute(scheduler="single-threaded").to_netcdf(
+        snakemake.output.average_ambient_air_temperature,
     )

From e39177fd42e69dac49f8f8ffd693b9c8fb41cc50 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Sun, 28 Jun 2026 14:44:50 +0200
Subject: [PATCH 14/22] chore(deps): bump the github-actions group across 1
 directory with 2 updates (#2217)

Bumps the github-actions group with 2 updates in the / directory: [actions/checkout](https://github.com/actions/checkout) and [actions/cache](https://github.com/actions/cache).


Updates `actions/checkout` from 6 to 7
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v6...v7)

Updates `actions/cache` from 5 to 6
- [Release notes](https://github.com/actions/cache/releases)
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md)
- [Commits](https://github.com/actions/cache/compare/v5...v6)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-version: '7'
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: github-actions
- dependency-name: actions/cache
  dependency-version: '6'
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: github-actions
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
---
 .github/workflows/codeql.yaml          | 2 +-
 .github/workflows/push-images.yaml     | 2 +-
 .github/workflows/release.yaml         | 6 +++---
 .github/workflows/security-scan.yaml   | 2 +-
 .github/workflows/test.yaml            | 8 ++++----
 .github/workflows/update-lockfile.yaml | 2 +-
 6 files changed, 11 insertions(+), 11 deletions(-)

diff --git a/.github/workflows/codeql.yaml b/.github/workflows/codeql.yaml
index 710db43d15..b8e114f938 100644
--- a/.github/workflows/codeql.yaml
+++ b/.github/workflows/codeql.yaml
@@ -55,7 +55,7 @@ jobs:
         # your codebase is analyzed, see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/codeql-code-scanning-for-compiled-languages
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v6
+      uses: actions/checkout@v7
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL
diff --git a/.github/workflows/push-images.yaml b/.github/workflows/push-images.yaml
index 4e08fa08ca..3c078130d3 100644
--- a/.github/workflows/push-images.yaml
+++ b/.github/workflows/push-images.yaml
@@ -14,7 +14,7 @@ jobs:
     name: dev-env
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v6
+    - uses: actions/checkout@v7
       with:
         fetch-depth: 0
 
diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml
index 9447ffcba6..547a499f84 100644
--- a/.github/workflows/release.yaml
+++ b/.github/workflows/release.yaml
@@ -16,7 +16,7 @@ jobs:
     outputs:
       prepared: ${{ steps.validate.outputs.prepared }}
     steps:
-    - uses: actions/checkout@v6
+    - uses: actions/checkout@v7
 
     - name: Validate commit message
       id: validate
@@ -46,7 +46,7 @@ jobs:
         app-id: ${{ vars.PYPSA_BOT_ID }}
         private-key: ${{ secrets.PYPSA_BOT_PRIVATE_KEY }}
 
-    - uses: actions/checkout@v6
+    - uses: actions/checkout@v7
       with:
         fetch-depth: 0
 
@@ -56,7 +56,7 @@ jobs:
         echo "Branch found: $branch"
         echo "BRANCH_NAME=$branch" >> $GITHUB_ENV
 
-    - uses: actions/checkout@v6
+    - uses: actions/checkout@v7
       with:
         fetch-depth: 0
         ref: ${{ env.BRANCH_NAME }}
diff --git a/.github/workflows/security-scan.yaml b/.github/workflows/security-scan.yaml
index 0893cd8c2f..f9efb9dbf9 100644
--- a/.github/workflows/security-scan.yaml
+++ b/.github/workflows/security-scan.yaml
@@ -22,7 +22,7 @@ jobs:
       run:
         shell: bash -l {0}
     steps:
-    - uses: actions/checkout@v6
+    - uses: actions/checkout@v7
     - uses: prefix-dev/setup-pixi@v0.9.6
       with:
         pixi-version: v0.68.1
diff --git a/.github/workflows/test.yaml b/.github/workflows/test.yaml
index b3401c5aa6..a6a1f0df1d 100644
--- a/.github/workflows/test.yaml
+++ b/.github/workflows/test.yaml
@@ -27,7 +27,7 @@ jobs:
         shell: bash -l {0}
 
     steps:
-    - uses: actions/checkout@v6
+    - uses: actions/checkout@v7
 
     - name: Setup Pixi
       uses: prefix-dev/setup-pixi@v0.9.6
@@ -54,7 +54,7 @@ jobs:
         shell: bash -l {0}
 
     steps:
-    - uses: actions/checkout@v6
+    - uses: actions/checkout@v7
 
     - uses: dorny/paths-filter@v4
       id: filter
@@ -100,13 +100,13 @@ jobs:
         echo "MONTH=$(date +'%Y%m')" >> $GITHUB_ENV # cutouts
         echo "VERSIONS_HASH=${{ hashFiles('data/versions.csv') }}" >> $GITHUB_ENV
 
-    - uses: actions/cache@v5
+    - uses: actions/cache@v6
       if: steps.filter.outputs.src == 'true' || github.event_name == 'schedule' || github.event_name == 'workflow_dispatch'
       with:
         path: data
         key: data-${{ env.WEEK }}-${{ env.VERSIONS_HASH }}
 
-    - uses: actions/cache@v5
+    - uses: actions/cache@v6
       if: steps.filter.outputs.src == 'true' || github.event_name == 'schedule' || github.event_name == 'workflow_dispatch'
       with:
         path: cutouts
diff --git a/.github/workflows/update-lockfile.yaml b/.github/workflows/update-lockfile.yaml
index 5cc7d46417..c0c3dfa1e6 100644
--- a/.github/workflows/update-lockfile.yaml
+++ b/.github/workflows/update-lockfile.yaml
@@ -16,7 +16,7 @@ jobs:
       run:
         shell: bash -l {0}
     steps:
-    - uses: actions/checkout@v6
+    - uses: actions/checkout@v7
 
     - name: Setup Pixi
       uses: prefix-dev/setup-pixi@v0.9.6

From b9a248c202fc96d99e20db4eadd2132aa0720e41 Mon Sep 17 00:00:00 2001
From: Fabian Neumann <fabian.neumann@outlook.de>
Date: Sun, 28 Jun 2026 15:26:24 +0200
Subject: [PATCH 15/22] revert #2201 PyPSA version limit (#2204)

* revert #2201 PyPSA version limit

* [pypsa-bot] run `sync-locks`

- `pixi run sync-locks`

---------

Co-authored-by: pypsa[bot] <181215446+pypsa[bot]@users.noreply.github.com>
Co-authored-by: Lukas Trippe <lkstrp@pm.me>
---
 envs/environment.yaml | 2 +-
 pixi.toml             | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/envs/environment.yaml b/envs/environment.yaml
index df666a3971..2603fadf4d 100644
--- a/envs/environment.yaml
+++ b/envs/environment.yaml
@@ -40,7 +40,7 @@ dependencies:
 - python-dotenv >=1.0
 - proj >=9.6.2
 - pydeck >0.6
-- pypsa <1.2
+- pypsa >=0.35.2
 - pyscipopt >=5.6.0
 - pytables >=3.10.2
 - python >=3.10
diff --git a/pixi.toml b/pixi.toml
index 87abd886a5..6d9bf24f08 100644
--- a/pixi.toml
+++ b/pixi.toml
@@ -82,7 +82,7 @@ pydantic = ">=2"
 python-dotenv = ">=1.0"
 proj = ">=9.6.2"
 pydeck = ">0.6"  # pypsa fails to import with pydeck <0.6, lower bound was only added from pypsa 1.0.6
-pypsa = "<1.2"
+pypsa = ">=0.35.2"
 pyscipopt = ">=5.6.0"
 pytables = ">=3.10.2"
 python = ">=3.10"

From e35dcc3691dc1905db41e5f6edf155b731925487 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Tue, 30 Jun 2026 10:42:43 +0200
Subject: [PATCH 16/22] chore(deps): bump prefix-dev/setup-pixi in the
 github-actions group (#2219)

Bumps the github-actions group with 1 update: [prefix-dev/setup-pixi](https://github.com/prefix-dev/setup-pixi).


Updates `prefix-dev/setup-pixi` from 0.9.6 to 0.10.0
- [Release notes](https://github.com/prefix-dev/setup-pixi/releases)
- [Commits](https://github.com/prefix-dev/setup-pixi/compare/v0.9.6...v0.10.0)

---
updated-dependencies:
- dependency-name: prefix-dev/setup-pixi
  dependency-version: 0.10.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: github-actions
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
---
 .github/workflows/release.yaml         | 2 +-
 .github/workflows/security-scan.yaml   | 2 +-
 .github/workflows/test.yaml            | 4 ++--
 .github/workflows/update-lockfile.yaml | 2 +-
 4 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml
index 547a499f84..56e62e522e 100644
--- a/.github/workflows/release.yaml
+++ b/.github/workflows/release.yaml
@@ -63,7 +63,7 @@ jobs:
         token: ${{ steps.generate-token.outputs.token }}
 
     - name: Setup Pixi
-      uses: prefix-dev/setup-pixi@v0.9.6
+      uses: prefix-dev/setup-pixi@v0.10.0
       with:
         pixi-version: v0.68.1
         cache: true
diff --git a/.github/workflows/security-scan.yaml b/.github/workflows/security-scan.yaml
index f9efb9dbf9..7faa8f2e42 100644
--- a/.github/workflows/security-scan.yaml
+++ b/.github/workflows/security-scan.yaml
@@ -23,7 +23,7 @@ jobs:
         shell: bash -l {0}
     steps:
     - uses: actions/checkout@v7
-    - uses: prefix-dev/setup-pixi@v0.9.6
+    - uses: prefix-dev/setup-pixi@v0.10.0
       with:
         pixi-version: v0.68.1
 
diff --git a/.github/workflows/test.yaml b/.github/workflows/test.yaml
index a6a1f0df1d..2672331b3e 100644
--- a/.github/workflows/test.yaml
+++ b/.github/workflows/test.yaml
@@ -30,7 +30,7 @@ jobs:
     - uses: actions/checkout@v7
 
     - name: Setup Pixi
-      uses: prefix-dev/setup-pixi@v0.9.6
+      uses: prefix-dev/setup-pixi@v0.10.0
       with:
         pixi-version: v0.68.1
         cache: true
@@ -87,7 +87,7 @@ jobs:
 
     - name: Setup Pixi
       if: steps.filter.outputs.src == 'true' || github.event_name == 'schedule' || github.event_name == 'workflow_dispatch'
-      uses: prefix-dev/setup-pixi@v0.9.6
+      uses: prefix-dev/setup-pixi@v0.10.0
       with:
         pixi-version: v0.68.1
         cache: true
diff --git a/.github/workflows/update-lockfile.yaml b/.github/workflows/update-lockfile.yaml
index c0c3dfa1e6..c65dc18aa8 100644
--- a/.github/workflows/update-lockfile.yaml
+++ b/.github/workflows/update-lockfile.yaml
@@ -19,7 +19,7 @@ jobs:
     - uses: actions/checkout@v7
 
     - name: Setup Pixi
-      uses: prefix-dev/setup-pixi@v0.9.6
+      uses: prefix-dev/setup-pixi@v0.10.0
       with:
         pixi-version: v0.68.1
 

From 9423f94cb87daaad811aec14492f633b2b86541d Mon Sep 17 00:00:00 2001
From: Bryn Pickering <17178478+brynpickering@users.noreply.github.com>
Date: Tue, 30 Jun 2026 15:15:39 +0200
Subject: [PATCH 17/22] Allow data version CSV / YAML file(s) to be specified
 in the config (#2189)

* Allow data version CSV file(s) to be specified in the config

* Minor fixes

* Allow YAML data versions

* Cache loaded versions; refactor data version schema test

* Revert config gen error message

* fix: update error message to include all version files configured

* Update docs

* Path fixes

---------

Co-authored-by: Johannes HAMPP <42553970+euronion@users.noreply.github.com>
Co-authored-by: Lukas Trippe <lkstrp@pm.me>
---
 Snakefile                                 |   4 +-
 config/config.default.yaml                |   2 +
 config/schema.default.json                |  16 ++
 doc/configuration.md                      |  14 +-
 doc/data_sources.md                       | 106 +++++++++---
 doc/release_notes.md                      |   2 +
 pixi.toml                                 |   4 +-
 rules/common.smk                          |  56 +++----
 rules/retrieve.smk                        |  37 +---
 scripts/_helpers.py                       |  75 ++++++++-
 scripts/lib/validation/config/__init__.py |   3 +
 scripts/lib/validation/config/data.py     | 140 +++++++++++++++-
 test/conftest.py                          |   8 +
 test/test_config_schema.py                |  14 +-
 test/test_data_versions_layer.py          | 196 +++++++++-------------
 15 files changed, 452 insertions(+), 225 deletions(-)

diff --git a/Snakefile b/Snakefile
index 420fa9d397..6ea8036f47 100644
--- a/Snakefile
+++ b/Snakefile
@@ -49,6 +49,8 @@ for scenario_name, scenario_overrides in scenarios.items():
         ) from e
 
 RDIR = get_rdir(run)
+PROJ_DIR = Path(workflow.snakefile).parent
+
 shadow_config = get_shadow(run)
 
 shared_resources = run["shared_resources"]["policy"]
@@ -56,7 +58,7 @@ exclude_from_shared = run["shared_resources"]["exclude"]
 logs = path_provider("logs/", RDIR, shared_resources, exclude_from_shared)
 benchmarks = path_provider("benchmarks/", RDIR, shared_resources, exclude_from_shared)
 resources = path_provider("resources/", RDIR, shared_resources, exclude_from_shared)
-scripts = script_path_provider(Path(workflow.snakefile).parent)
+scripts = script_path_provider(PROJ_DIR)
 
 RESULTS = "results/" + RDIR
 workflow.default_target = config["run"]["default_target_rule"]
diff --git a/config/config.default.yaml b/config/config.default.yaml
index c637a0514e..62959b6324 100644
--- a/config/config.default.yaml
+++ b/config/config.default.yaml
@@ -1293,6 +1293,8 @@ solving:
 
 # docs in https://pypsa-eur.readthedocs.io/en/latest/configuration.html#data
 data:
+  version_files:
+  - data/versions.csv
   hotmaps_industrial_sites:
     source: archive
     version: latest
diff --git a/config/schema.default.json b/config/schema.default.json
index b41166ce95..739514c91a 100644
--- a/config/schema.default.json
+++ b/config/schema.default.json
@@ -876,6 +876,14 @@
     "DataConfig": {
       "description": "Configuration for `data` settings.",
       "properties": {
+        "version_files": {
+          "description": "\n        List of paths to version files.\n        If multiple paths are provided, they will be merged with priority given to the later paths in the list.\n        This allows for overriding default versions with custom versions, without modifying the default version file.\n\n        All filepaths must be relative to the project root or as an absolute path and point to one of:\n        - a CSV file.\n        - a YAML file with a list of version entries, which will be converted internally to CSV format.\n          This allows for easier editing of versions with comments and multi-line notes.\n          This is equivalent to calling `df.to_dict(orient='records')` on a dataframe with the same structure as the CSV version files, and then dumping to YAML.\n\n        The CSV columns / YAML fields must be:\n        - `dataset`: The name of the dataset (e.g., \"hotmaps_industrial_sites\", \"enspreso_biomass\", etc.).\n        - `version`: The version of the dataset to use (e.g., \"latest\", \"v1.0\", etc.).\n        - `source`: The source of the dataset (e.g., \"archive\", \"primary\", \"build\").\n          \"archive\" retrieves data from an organisation data bucket (e.g. `data.pypsa.org`).\n          \"primary\" retrieves data from the primary source (e.g. Eurostat, OSM, etc.).\n          \"build\" retrieves data from the result of a build script within the PyPSA-Eur workflow itself, rather than a remote source.\n        - `tags`: space separated tags for the dataset, which will become boolean columns when loaded into the workflow.\n          \"supported\" must be a tag on a version if it is supported by the workflow.\n          \"latest\" must be a tag on the version of each `source` that should be used when `version` is set to \"latest\".\n        - `added`: The date when the dataset version was added (e.g., \"2024-01-01\").\n        - `note`: [Optional] notes about the dataset version.\n        - `url`: URL to the dataset version. Optional if data `source` is \"build\", otherwise required.\n        ",
+          "items": {
+            "format": "file-path",
+            "type": "string"
+          },
+          "type": "array"
+        },
         "hotmaps_industrial_sites": {
           "description": "Configuration for a single data source.",
           "properties": {
@@ -12701,6 +12709,14 @@
     "data": {
       "description": "Configuration for `data` settings.",
       "properties": {
+        "version_files": {
+          "description": "\n        List of paths to version files.\n        If multiple paths are provided, they will be merged with priority given to the later paths in the list.\n        This allows for overriding default versions with custom versions, without modifying the default version file.\n\n        All filepaths must be relative to the project root or as an absolute path and point to one of:\n        - a CSV file.\n        - a YAML file with a list of version entries, which will be converted internally to CSV format.\n          This allows for easier editing of versions with comments and multi-line notes.\n          This is equivalent to calling `df.to_dict(orient='records')` on a dataframe with the same structure as the CSV version files, and then dumping to YAML.\n\n        The CSV columns / YAML fields must be:\n        - `dataset`: The name of the dataset (e.g., \"hotmaps_industrial_sites\", \"enspreso_biomass\", etc.).\n        - `version`: The version of the dataset to use (e.g., \"latest\", \"v1.0\", etc.).\n        - `source`: The source of the dataset (e.g., \"archive\", \"primary\", \"build\").\n          \"archive\" retrieves data from an organisation data bucket (e.g. `data.pypsa.org`).\n          \"primary\" retrieves data from the primary source (e.g. Eurostat, OSM, etc.).\n          \"build\" retrieves data from the result of a build script within the PyPSA-Eur workflow itself, rather than a remote source.\n        - `tags`: space separated tags for the dataset, which will become boolean columns when loaded into the workflow.\n          \"supported\" must be a tag on a version if it is supported by the workflow.\n          \"latest\" must be a tag on the version of each `source` that should be used when `version` is set to \"latest\".\n        - `added`: The date when the dataset version was added (e.g., \"2024-01-01\").\n        - `note`: [Optional] notes about the dataset version.\n        - `url`: URL to the dataset version. Optional if data `source` is \"build\", otherwise required.\n        ",
+          "items": {
+            "format": "file-path",
+            "type": "string"
+          },
+          "type": "array"
+        },
         "hotmaps_industrial_sites": {
           "description": "Configuration for a single data source.",
           "properties": {
diff --git a/doc/configuration.md b/doc/configuration.md
index b3ddeda0b6..c2f1f72943 100644
--- a/doc/configuration.md
+++ b/doc/configuration.md
@@ -4,7 +4,6 @@
 
 <a id="config"></a>
 
-# 
 # Configuration
 
 PyPSA-Eur has several configuration options which are documented in this section.
@@ -542,7 +541,7 @@ Only used for sector-coupling studies.
 ??? note "Details"
 
     Configuration for `sector` settings.
-    
+
     | Property | Type | Default | Description |
     |----------|------|---------|-------------|
     | `transport` | boolean | `true` | Flag to include transport sector. |
@@ -725,7 +724,7 @@ Only used for sector-coupling studies.
     |   `limit` | number |  | Maximum allowed renewable energy imports (TWh). |
     |   `limit_sense` | string | `<=` | Sense of the limit. |
     |   `price` | dict (str -> number) |  | Price for importing renewable energy of carrier. |
-    
+
 
 **YAML Syntax**
 
@@ -825,10 +824,11 @@ Some datasets support `primary` or `build` as a source option, meaning that the
 data source or build it from the latest available data.
 See the `data/versions.csv` file for all available datasets and their sources/versions that are supported.
 
-??? note "Details"
+In your own project, you can define additional version files to modify the contents of `data/versions.csv`.
+See the [data versioning documentation](data_sources.md#managing_data_versions) for more details.
+
+??? note "Configuration for `data` settings."
 
-    Configuration for `data` settings.
-    
     | Property | Type | Default | Description |
     |----------|------|---------|-------------|
     | `hotmaps_industrial_sites` | any |  | Configuration for a single data source. |
@@ -1008,7 +1008,7 @@ See the `data/versions.csv` file for all available datasets and their sources/ve
     | `bidding_zones_entsoepy` | any |  | Configuration for a single data source. |
     |   `source` | enum (`archive`, `primary`, `build`) | `archive` | Source of the data. 'archive' retrieves pre-built data, 'primary' retrieves from primary source. |
     |   `version` | string | `latest` | Version of the data to use. Uses the specific 'version' for the selected 'source' or the dataset tagged 'latest' for this source. |
-    
+
 
 **YAML Syntax**
 
diff --git a/doc/data_sources.md b/doc/data_sources.md
index 48ae704794..2046117e09 100644
--- a/doc/data_sources.md
+++ b/doc/data_sources.md
@@ -3,11 +3,11 @@
 
 # Data Sources
 
-PyPSA-Eur is compiled from a variety of data sources. The following table provides an
-overview of the data sources used in PyPSA-Eur. Different licenses apply to the
-data sources.
+PyPSA-Eur is compiled from a variety of data sources.
+The [below table](#data-inventory) provides an overview of the data sources used in PyPSA-Eur.
+Different licenses apply to the data sources.
 
-# Data Versioning {#managing_data_versions}
+## Data Versioning {#managing_data_versions}
 
 Many of the data sources used in PyPSA-Eur are updated regularly.
 To ensure reproducibility, PyPSA-Eur uses a versioning system for data sources which
@@ -21,7 +21,7 @@ public file storage for the repository under `https://data.pypsa.org`.
     version. Reproducibility is given even when using the `latest` tag via the
     `versions.csv`, which is version controlled.
 
-## Understanding `versions.csv`
+### Understanding `versions.csv`
 
 The file `data/versions.csv` is the central registry for all data sources and their versions.
 Each row defines a specific version of a dataset with the following columns:
@@ -41,37 +41,95 @@ Entries to the `versions.csv` are never deleted and if a dataset was removed or
     If the original data source does not provide versioned URLs (i.e., the URL always points to the latest data), the `version` is set to `unknown`.
     In this case, the corresponding `archive` entries do not mirror the same version but represent snapshots taken at specific points in time from that primary source.
 
-## Adding a new version of a dataset
+### Updating `versions.csv`
 
-If you notice that a data source has been updated and want to add the new version to PyPSA-Eur:
+There are two methods for updating the data versions:
 
-1. Add a new row to `data/versions.csv` with the same `dataset` name, the new `version`, `source` set to `primary`, and the `url` pointing to the original data source.
-2. Set appropriate tags (typically `latest supported`).
-3. Update the tags of the previous version (remove `latest`, keep `supported` if still compatible).
-4. Create a pull request with your changes.
-5. Of course, any potential workflow adjustments should be considered and implemented as well.
+1. Add a new row to `data/versions.csv`.
+1. Create a new version file and reference it in the configuration under [`data→version_files`](configuration.md#data_cf).
+
+If you are working on a fork of PyPSA-Eur, you will benefit from updating versions in a separate file as it mitigates merge conflicts when `data/versions.csv` is updated upstream.
+It also clearly separates the data versions that are specific to your project from those that have been inherited from upstream.
+
+#### Maintaining multiple version files
+
+If you define your version updates in separate file(s), you can request them to be included at runtime by updating the `data` `version_files` key:
+
+```yaml
+data:
+    version_files:
+    - data/versions.csv # remove this entry if `data/my_version_overrides.csv` is a complete replacement
+    - data/my_version_overrides.csv
+```
+
+New version files can be provided in CSV or YAML format.
+For examples of the CSV format, see the current `data/versions.csv` file.
+An equivalent YAML format example would be:
+
+```yaml
+# One list entry per equivalent CSV row
+# Keys = CSV column names
+- dataset: aquifer_data
+    version: v1.2
+    source: archive
+    tags: latest supported
+    added: 2025-12-02
+    note: my custom note
+    url: https://data.pypsa.org/workflows/eur/aquifer_data/v1.2/IHME1500_v12.zip
+```
+
+Priority is given to the definition of a dataset given later in the list.
+Therefore, any datasets sharing the same `[dataset, version, source]` combination will be overwritten in the list.
+Any new entries will be appended to the list.
+
+#### Adding a new version of a dataset
+
+=== "Updating PyPSA/PyPSA-Eur"
+    If you notice that a data source has been updated and want to add the new version to PyPSA-Eur:
+
+    1. Add a new row to `data/versions.csv` with the same `dataset` name, the new `version`, `source` set to `primary`, and the `url` pointing to the new data source.
+    1. Set appropriate tags (typically `latest supported`).
+    1. Update the tags of the previous version (remove `latest`, keep `supported` if still compatible).
+    1. Create a pull request with your changes.
+    1. Of course, any potential workflow adjustments should be considered and implemented as well.
+
+=== "Updating your own project / soft fork"
+    If you want to update a version in your own project, to one that better reflects your needs:
+
+    1. Add a new row to your own file (e.g., `data/custom_versions.csv`) with a copy of the relevant dataset row in `data/versions.csv`.
+    1. Update the `version` and `url` in this copied row, and set the `source` to `primary`.
+    1. Set appropriate tags (typically `latest supported`).
+    1. Add a reference to your own version file in the configuration by extending the `data→version_files` list.
+    1. Of course, any potential workflow adjustments should be considered and implemented as well.
 
 !!! note
     If the `primary` source has `version` set to `unknown` (i.e., the URL always points to the latest data) and a new version is available that has not been archived yet, please open an issue on the [PyPSA-Eur GitHub repository](https://github.com/pypsa/pypsa-eur/issues) to request an archive update.
 
-## Adding a new dataset
+#### Adding a new dataset
 
-To add a completely new data source to PyPSA-Eur:
+=== "Updating PyPSA/PyPSA-Eur"
 
-1. Add a `primary` entry to `data/versions.csv` with a new unique dataset name, version, and URL pointing to the original data source.
-2. Implement a `retrieve` rule for your dataset in `rules/retrieve.smk`.
-   Take inspiration from existing rules in the file.
-3. Add the new data source to:
+    1. Add a `primary` entry to `data/versions.csv` with a new unique dataset name, version, and URL pointing to the original data source.
+    1. Implement a `retrieve` rule for your dataset in `rules/retrieve.smk`.
+       Take inspiration from existing rules in the file.
+    1. Add the new data source to:
+       * `data` section in the configuration schema `scripts/lib/validation/config/data.py`.
+       * `data_inventory.csv` data inventory for PyPSA-Eur.
+    1. Create a pull request with your changes.
 
-   * `data` section in the pydantic schema `scripts/lib/validation/config/data.py`
-   * `data_inventory.csv` data inventory for PyPSA-Eur
+    !!! note
+        Maintainers of the repository will create the corresponding `archive` entry after reviewing your contribution.
 
-4. Create a pull request with your changes.
 
-!!! note
-    Maintainers of the repository will create the corresponding `archive` entry after reviewing your contribution.
+=== "Updating your own project / soft fork"
+
+    1. Add a `primary` entry to your own version file (e.g., `data/custom_versions.csv`) with a new unique dataset name, version, and URL pointing to the original data source.
+    1. Implement a `retrieve` rule for your dataset in `rules/retrieve.smk` or your own separate retrieval rule file.
+       Take inspiration from existing rules in `rules/retrieve.smk`.
+    1. Add a reference to your own version file in the configuration by extending the `data→version_files` list.
+    1. Add the new data source to the configuration by [extending the base schema](validation_dev.md#soft_fork_ext)
 
-# Data inventory
+## Data inventory
 
 {{ read_csv("doc/data_inventory.csv") }}
 
diff --git a/doc/release_notes.md b/doc/release_notes.md
index 2a3e909478..7dc4b00de2 100644
--- a/doc/release_notes.md
+++ b/doc/release_notes.md
@@ -5,6 +5,8 @@
 
 <!-- Upcoming Release -->
 <!-- ================= -->
+
+* feat: data version CSV / YAML file can be specified separately or extended by the user in the `data.version_files` config entry ([#2016](https://github.com/PyPSA/pypsa-eur/issues/2016)).
 * Fix: Resolve plotting crashes from missing `tech_colors` entries by adding `heat dsm` color and implementing upfront validation for missing keys in `plot_summary.py` ([#2108](https://github.com/PyPSA/pypsa-eur/issues/2108)).
 * feat: Make the default target rule configurable (defaults to "all" for backwards compatibility)
 
diff --git a/pixi.toml b/pixi.toml
index 6d9bf24f08..c94bbce790 100644
--- a/pixi.toml
+++ b/pixi.toml
@@ -37,8 +37,6 @@ update-dags = """
 	snakemake --dag --configfile config/test/config.myopic.yaml | sed -n '/^digraph/,$ p' | dot -Tsvg -o doc/img/dag_myopic.svg
 """
 
-generate-config = "python -c 'from scripts.lib.validation.config import generate_config_defaults, generate_config_schema; generate_config_defaults(); generate_config_schema()'"
-
 sync-locks = """
     pixi install -e default && \
     pixi workspace export conda-explicit-spec -e default envs && \
@@ -180,6 +178,8 @@ unit-tests = "pytest test"
 
 all-tests = {depends-on = ["integration-tests", "clean-tests", "unit-tests"]}
 
+generate-config = "pytest test/test_config_schema.py --fix"
+
 [feature.test.dependencies]
 pytest = ">=8.4.2"
 
diff --git a/rules/common.smk b/rules/common.smk
index 210d79a872..66c1aedcda 100644
--- a/rules/common.smk
+++ b/rules/common.smk
@@ -8,14 +8,14 @@ from functools import partial, lru_cache
 import os, sys, glob
 import requests
 
-
 import pandas as pd
 import json
+import yaml
 
 path = workflow.source_path("../scripts/_helpers.py")
 sys.path.insert(0, os.path.dirname(path))
 
-from scripts._helpers import update_config_from_wildcards
+from scripts._helpers import update_config_from_wildcards, load_data_versions
 from snakemake.utils import update_config
 
 
@@ -83,52 +83,34 @@ def config_provider(*keys, default=None):
         return partial(static_getter, keys=keys, default=default)
 
 
-@lru_cache
-def load_data_versions(file_path):
-    data_versions = pd.read_csv(
-        file_path,
-        dtype=str,
-        na_filter=False,
-        delimiter=",",
-        comment="#",
-    )
-
-    # Turn space-separated tags into individual columns
-    data_versions["tags"] = data_versions["tags"].str.split()
-    exploded = data_versions.explode("tags")
-    dummies = pd.get_dummies(exploded["tags"], dtype=bool)
-    tags_matrix = dummies.groupby(dummies.index).max()
-    data_versions = data_versions.join(tags_matrix)
-
-    return data_versions
-
-
-def dataset_version(
-    name: str,
-) -> pd.Series:
+def dataset_version(name: str, **dataset_config_overrides: str) -> pd.Series:
     """
     Return the dataset version information and url for a given dataset name.
 
     The dataset name is used to determine the source and version of the dataset from the configuration.
     Then the 'data/versions.csv' file is queried to find the matching dataset entry.
 
-    Parameters:
-    name: str
+    Parameters
+    ----------
+    name : str
         The name of the dataset to retrieve version information for.
+    **dataset_config_overrides : str
+        entries to override the dataset config for the given `name`.
 
-    Returns:
+    Returns
+    -------
     pd.Series
         A pandas Series containing the dataset version information, including source, version, tags, and URL
     """
+    dataset_config = {**config["data"][name], **dataset_config_overrides}
+    data_version_files = config["data"]["version_files"]
 
-    dataset_config = config["data"][
-        name
-    ]  # TODO as is right now, it is not compatible with config_provider
-
-    # To use PyPSA-Eur as a snakemake module, the path to the versions.csv file needs to be
-    # registered relative to the current file with Snakemake:
-    fp = workflow.source_path("../data/versions.csv")
-    data_versions = load_data_versions(fp)
+    data_versions = load_data_versions(
+        *(
+            (PROJ_DIR / path if not (path := Path(file)).is_absolute() else path)
+            for file in data_version_files
+        )
+    )
 
     dataset = data_versions.loc[
         (data_versions["dataset"] == name)
@@ -144,7 +126,7 @@ def dataset_version(
 
     if dataset.empty:
         raise ValueError(
-            f"Dataset '{name}' with source '{dataset_config['source']}' for '{dataset_config['version']}' not found in data/versions.csv."
+            f"Dataset '{name}' with source '{dataset_config['source']}' for '{dataset_config['version']}' not found in {data_version_files}."
         )
 
     # Return single-row DataFrame as a Series
diff --git a/rules/retrieve.smk b/rules/retrieve.smk
index 3d6852a67d..20cf84a7e6 100755
--- a/rules/retrieve.smk
+++ b/rules/retrieve.smk
@@ -1255,42 +1255,10 @@ def get_osm_archive_files(version):
     ]
 
 
-def get_osm_network_incumbent(
-    version: str = "latest",
-    source: str = "archive",
-) -> pd.Series:
-    fp = workflow.source_path("../data/versions.csv")
-    data_versions = load_data_versions(fp)
-    name = "osm"
-
-    dataset = data_versions.loc[
-        (data_versions["dataset"] == name)
-        & (data_versions["source"] == source)
-        & (data_versions["supported"])  # Limit to supported versions only
-        & (data_versions["version"] == version if "latest" != version else True)
-        & (data_versions["latest"] if "latest" == version else True)
-    ]
-
-    if dataset.empty:
-        raise ValueError(
-            f"OSM network for version '{version}' not found in data/versions.csv."
-        )
-
-    # Return single-row DataFrame as a Series
-    dataset = dataset.squeeze()
-
-    # Generate output folder path in the `data` directory
-    dataset["folder"] = Path(
-        "data", name, dataset["source"], dataset["version"]
-    ).as_posix()
-
-    return dataset
-
-
 def input_base_network_incumbent(w):
     version = config_provider("osm_network_release", "compare_to", "version")(w)
     source = config_provider("osm_network_release", "compare_to", "source")(w)
-    osm_dataset = get_osm_network_incumbent(version, source)
+    osm_dataset = dataset_version("osm", version=version, source=source)
     osm_path = osm_dataset["folder"]
     components = {"buses", "lines", "links", "converters", "transformers"}
     inputs = {c: f"{osm_path}/{c}.csv" for c in components}
@@ -1322,7 +1290,8 @@ if OSM_DATASET["source"] in ["archive"]:
 
 
 # Only create incumbent rule if it points to a different folder
-OSM_DATASET_INCUMBENT = get_osm_network_incumbent(
+OSM_DATASET_INCUMBENT = dataset_version(
+    "osm",
     version=config.get("osm_network_release", {})
     .get("compare_to", {})
     .get("version", "latest"),
diff --git a/scripts/_helpers.py b/scripts/_helpers.py
index 4c74e4b718..17b8b444a3 100644
--- a/scripts/_helpers.py
+++ b/scripts/_helpers.py
@@ -10,7 +10,7 @@
 import re
 import time
 from collections.abc import Callable
-from functools import partial, wraps
+from functools import lru_cache, partial, wraps
 from pathlib import Path
 from tempfile import NamedTemporaryFile
 from typing import Literal
@@ -27,6 +27,8 @@
 from snakemake.utils import update_config
 from tqdm import tqdm
 
+from scripts.lib.validation.config.data import VersionsSchema
+
 logger = logging.getLogger(__name__)
 
 REGION_COLS = ["geometry", "name", "x", "y", "country"]
@@ -1088,3 +1090,74 @@ def load_costs(cost_file: str) -> pd.DataFrame:
     """
 
     return pd.read_csv(cost_file, index_col=0)
+
+
+@lru_cache
+def load_data_versions(*files: Path) -> pd.DataFrame:
+    """
+    Load data versions from multiple CSV or YAML files and combine them into a single DataFrame.
+
+    Parameters
+    ----------
+    *files : Path
+        Paths to the CSV or YAML files containing data version information.
+
+    Returns
+    -------
+    pd.DataFrame
+        Combined DataFrame containing the data version information from all files, with, optionally, columns for each tag.
+    """
+    data_versions_list = [
+        _load_data_version(file).set_index(["dataset", "version", "source"])
+        for file in files
+    ]
+    combined_data_versions = pd.concat(data_versions_list)
+
+    deduplicated_data_versions = (
+        combined_data_versions.loc[
+            ~combined_data_versions.index.duplicated(keep="last")
+        ]
+        .sort_index()
+        .reset_index()
+    )
+
+    # Turn space-separated tags into individual columns
+    deduplicated_data_versions["tags"] = deduplicated_data_versions["tags"].str.split()
+    exploded = deduplicated_data_versions.explode("tags")
+    dummies = pd.get_dummies(exploded["tags"], dtype=bool)
+    tags_matrix = dummies.groupby(dummies.index).max()
+    deduplicated_data_versions = deduplicated_data_versions.join(tags_matrix)
+
+    return deduplicated_data_versions
+
+
+def _load_data_version(file: str | Path, validate: bool = True) -> pd.DataFrame:
+    """
+    Load data versions from a CSV or YAML file.
+
+    Parameters
+    ----------
+    file : str
+        Path to the CSV or YAML file containing data version information.
+    validate : bool, default True
+        If True, validate the loaded data against the VersionsSchema.
+
+    Returns
+    -------
+    pd.DataFrame
+        DataFrame containing the data version information, with, optionally, columns for each tag.
+    """
+    if (file_path := Path(file)).suffix.lower() in [".yaml", ".yml"]:
+        data_versions = pd.DataFrame(yaml.safe_load(file_path.read_text()))
+    else:
+        data_versions = pd.read_csv(
+            file_path,
+            dtype=str,
+            na_filter=False,
+            delimiter=",",
+            comment="#",
+        )
+    if validate:
+        data_versions = VersionsSchema.validate(data_versions)
+
+    return data_versions
diff --git a/scripts/lib/validation/config/__init__.py b/scripts/lib/validation/config/__init__.py
index 39cbde81de..a33d64d47a 100644
--- a/scripts/lib/validation/config/__init__.py
+++ b/scripts/lib/validation/config/__init__.py
@@ -10,6 +10,7 @@
 `**/pypsa-eur*/config/*.yaml` to get IDE support without additional configuration.
 """
 
+import pathlib
 import re
 
 from pydantic import ValidationError
@@ -61,6 +62,7 @@ def convert_to_field_name(key: str) -> str:
     def str_representer(dumper, data):
         """Use block style for multiline, quotes for special chars, plain otherwise."""
         TAG = "tag:yaml.org,2002:str"
+        data = str(data)  # Ensure it's a plain string (not e.g. Path)
         if "\n" in data:
             return dumper.represent_scalar(TAG, data, style="|")
         if data == "" or any(c in data for c in ":{}[]&*#?|-<>=!%@"):
@@ -68,6 +70,7 @@ def str_representer(dumper, data):
         return dumper.represent_scalar(TAG, data, style="")
 
     yaml_writer.representer.add_representer(str, str_representer)
+    yaml_writer.representer.add_multi_representer(pathlib.PurePath, str_representer)
 
     # Create a CommentedMap to add comments
     data = CommentedMap()
diff --git a/scripts/lib/validation/config/data.py b/scripts/lib/validation/config/data.py
index ae56656912..18477518fd 100644
--- a/scripts/lib/validation/config/data.py
+++ b/scripts/lib/validation/config/data.py
@@ -8,12 +8,112 @@
 See docs in https://pypsa-eur.readthedocs.io/en/latest/configuration.html#data
 """
 
+from datetime import date
+from pathlib import Path
 from typing import Literal
 
-from pydantic import BaseModel, Field
+import pandas as pd
+from natsort import natsort_keygen
+from pandera.pandas import Check, Column, DataFrameSchema
+from pydantic import BaseModel, Field, FilePath, field_validator
 
 from scripts.lib.validation.config._base import ConfigModel
 
+VALID_SOURCES = ["primary", "archive", "build"]  # Order defines sort priority
+
+VALID_TAGS = {
+    "latest",
+    "supported",
+    "not-supported",
+    "deprecated",
+    "might-work",
+    "not-tested",
+    "broken-link",
+}
+
+not_empty = [Check.str_length(min_value=1), Check.str_matches(r"\S")]
+valid_tags = Check(lambda s: all(t in VALID_TAGS for t in s.split()), element_wise=True)
+url_safe = Check.str_matches(
+    r"^[a-z0-9_\-\.]+$",
+    error="Version must be URL-safe (only alphanumeric, hyphen, underscore, dot)",
+)
+
+
+def sort_versions(df: pd.DataFrame) -> pd.DataFrame:
+    """Sort by dataset (asc), version (desc, natural), source (as predefined)."""
+    natsort_key = natsort_keygen(key=str.casefold)
+    df = df.copy()
+    df["source"] = pd.Categorical(df["source"], categories=VALID_SOURCES, ordered=True)
+    df = df.sort_values(
+        by=["dataset", "version", "source"],
+        key=lambda c: c.map(natsort_key) if c.name != "source" else c,
+        ascending=[True, False, True],
+    ).reset_index(drop=True)
+    df["source"] = df["source"].astype(str)
+    df = df[VersionsSchema.columns.keys()]  # Ensure column order
+    return df
+
+
+is_sorted = Check(lambda df: df.equals(sort_versions(df)), error="Data must be sorted")
+archive_has_url = Check(
+    lambda df: df.loc[df["source"] == "archive", "url"].str.len().gt(0).all(),
+    error="Archive entries must have a URL",
+)
+one_latest_per_dataset_source = Check(
+    lambda df: (
+        df[df["tags"].str.contains("latest")]
+        .groupby(["dataset", "source"])
+        .size()
+        .eq(1)
+        .all()
+    ),
+    error="Exactly one 'latest' tag required per dataset/source combination",
+)
+latest_same_version_across_sources = Check(
+    lambda df: (
+        df[(df["tags"].str.contains("latest")) & (df["version"] != "unknown")]
+        .groupby("dataset")["version"]
+        .nunique()
+        .le(1)
+        .all()
+    ),
+    error="All 'latest' entries for a dataset must have the same version across sources (excluding 'unknown')",
+)
+VersionsSchema = DataFrameSchema(
+    {
+        "dataset": Column(str, not_empty, nullable=False),
+        "version": Column(str, not_empty + [url_safe], nullable=False),
+        "source": Column(str, Check.isin(VALID_SOURCES)),
+        "tags": Column(str, valid_tags, nullable=False),
+        "added": Column(
+            str,
+            Check.str_matches(r"^\d{4}-\d{2}-\d{2}$"),
+            nullable=False,
+            coerce=True,
+            default=date.today().isoformat(),
+        ),
+        "note": Column(str, nullable=True),
+        "url": Column(
+            str,
+            Check.str_matches(
+                r'^(https?://[^:\s<>"|*]*)?$',
+                error='URL must start with http(s):// and not contain colons (use %3A), spaces, or Windows-invalid characters (<>"|*).',
+            ),
+            nullable=True,
+        ),
+    },
+    checks=[
+        is_sorted,
+        archive_has_url,
+        one_latest_per_dataset_source,
+        latest_same_version_across_sources,
+    ],
+    coerce=True,
+    strict=True,
+    ordered=True,
+    unique=["dataset", "version", "source"],
+)
+
 
 class _DataSourceConfig(ConfigModel):
     """Configuration for a single data source."""
@@ -31,6 +131,44 @@ class _DataSourceConfig(ConfigModel):
 class DataConfig(BaseModel):
     """Configuration for `data` settings."""
 
+    @field_validator("version_files")
+    @classmethod
+    def check_version_files_are_correct_suffix(
+        cls, v: list[FilePath]
+    ) -> list[FilePath]:
+        for path in v:
+            if path.suffix.lower() not in {".csv", ".yaml", ".yml"}:
+                raise ValueError(f"Version file '{path}' must be a CSV or YAML file.")
+        return v
+
+    version_files: list[FilePath] = Field(
+        default_factory=lambda: [Path("data/versions.csv")],
+        description="""
+        List of paths to version files.
+        If multiple paths are provided, they will be merged with priority given to the later paths in the list.
+        This allows for overriding default versions with custom versions, without modifying the default version file.
+
+        All filepaths must be relative to the project root or as an absolute path and point to one of:
+        - a CSV file.
+        - a YAML file with a list of version entries, which will be converted internally to CSV format.
+          This allows for easier editing of versions with comments and multi-line notes.
+          This is equivalent to calling `df.to_dict(orient='records')` on a dataframe with the same structure as the CSV version files, and then dumping to YAML.
+
+        The CSV columns / YAML fields must be:
+        - `dataset`: The name of the dataset (e.g., "hotmaps_industrial_sites", "enspreso_biomass", etc.).
+        - `version`: The version of the dataset to use (e.g., "latest", "v1.0", etc.).
+        - `source`: The source of the dataset (e.g., "archive", "primary", "build").
+          "archive" retrieves data from an organisation data bucket (e.g. `data.pypsa.org`).
+          "primary" retrieves data from the primary source (e.g. Eurostat, OSM, etc.).
+          "build" retrieves data from the result of a build script within the PyPSA-Eur workflow itself, rather than a remote source.
+        - `tags`: space separated tags for the dataset, which will become boolean columns when loaded into the workflow.
+          "supported" must be a tag on a version if it is supported by the workflow.
+          "latest" must be a tag on the version of each `source` that should be used when `version` is set to "latest".
+        - `added`: The date when the dataset version was added (e.g., "2024-01-01").
+        - `note`: [Optional] notes about the dataset version.
+        - `url`: URL to the dataset version. Optional if data `source` is "build", otherwise required.
+        """,
+    )
     hotmaps_industrial_sites: _DataSourceConfig = Field(
         default_factory=_DataSourceConfig,
         description="Hotmaps industrial sites data source configuration.",
diff --git a/test/conftest.py b/test/conftest.py
index 1bb133b1fd..3ec0accadb 100644
--- a/test/conftest.py
+++ b/test/conftest.py
@@ -163,3 +163,11 @@ def italy_shape(download_natural_earth, tmpdir):
     italy_shape_file_path = pathlib.Path(tmpdir, "italy_shape.geojson")
     italy_shape_file.to_file(italy_shape_file_path, driver="GeoJSON")
     yield italy_shape_file_path
+
+
+def pytest_addoption(parser):
+    parser.addoption(
+        "--fix",
+        action="store_true",
+        help="Attempt fix of issues in the data versions layer CSV files and the default config YAML & schema JSON.",
+    )
diff --git a/test/test_config_schema.py b/test/test_config_schema.py
index 4c62420c81..c3c593300b 100644
--- a/test/test_config_schema.py
+++ b/test/test_config_schema.py
@@ -63,13 +63,15 @@ def _check_file_in_sync(existing_path: Path, generate_func, file_type: str):
         print("=" * 80)
         pytest.fail(
             f"{existing_path} is out of sync with the Pydantic schema. "
-            "Run 'pixi run generate-config' to update. See diff above."
+            "Run `pixi run generate-config` to update. See diff above."
         )
 
 
-def test_config_default_yaml_in_sync(config_file):
+def test_config_default_yaml_in_sync(config_file, pytestconfig):
     """Test that config/config.default.yaml is in sync with Pydantic schema."""
-
+    fix = pytestconfig.getoption("fix")
+    if fix:
+        generate_config_defaults(config_file.as_posix())
     _check_file_in_sync(
         config_file,
         generate_config_defaults,
@@ -77,9 +79,11 @@ def test_config_default_yaml_in_sync(config_file):
     )
 
 
-def test_config_schema_json_in_sync(schema_file):
+def test_config_schema_json_in_sync(schema_file, pytestconfig):
     """Test that config/schema.default.json is in sync with Pydantic schema."""
-
+    fix = pytestconfig.getoption("fix")
+    if fix:
+        generate_config_schema(schema_file.as_posix())
     _check_file_in_sync(
         schema_file,
         generate_config_schema,
diff --git a/test/test_data_versions_layer.py b/test/test_data_versions_layer.py
index 86809986f8..75a875c261 100644
--- a/test/test_data_versions_layer.py
+++ b/test/test_data_versions_layer.py
@@ -2,133 +2,103 @@
 #
 # SPDX-License-Identifier: MIT
 
-from datetime import date
 from pathlib import Path
 
 import pandas as pd
 import pandera.pandas as pa
-from natsort import natsort_keygen
-from pandera.pandas import Check, Column
+import pytest
+import yaml
 
-VERSIONS_CSV = Path(__file__).parent.parent / "data" / "versions.csv"
-VALID_SOURCES = ["primary", "archive", "build"]  # Order defines sort priority
-
-VALID_TAGS = {
-    "latest",
-    "supported",
-    "not-supported",
-    "deprecated",
-    "might-work",
-    "not-tested",
-    "broken-link",
-}
-
-not_empty = [Check.str_length(min_value=1), Check.str_matches(r"\S")]
-valid_tags = Check(lambda s: all(t in VALID_TAGS for t in s.split()), element_wise=True)
-url_safe = Check.str_matches(
-    r"^[a-z0-9_\-\.]+$",
-    error="Version must be URL-safe (only alphanumeric, hyphen, underscore, dot)",
+from scripts._helpers import _load_data_version, load_data_versions
+from scripts.lib.validation.config import (
+    validate_config,
 )
+from scripts.lib.validation.config.data import VersionsSchema, sort_versions
 
+VERSIONS_PATHS = [
+    Path(__file__).parent.parent / file if not Path(file).is_absolute() else Path(file)
+    for file in validate_config({}).data.version_files
+]
 
-def sort_versions(df: pd.DataFrame) -> pd.DataFrame:
-    """Sort by dataset (asc), version (desc, natural), source (as predefined)."""
-    natsort_key = natsort_keygen(key=str.casefold)
-    df = df.copy()
-    df["source"] = pd.Categorical(df["source"], categories=VALID_SOURCES, ordered=True)
-    df = df.sort_values(
-        by=["dataset", "version", "source"],
-        key=lambda c: c.map(natsort_key) if c.name != "source" else c,
-        ascending=[True, False, True],
-    ).reset_index(drop=True)
-    df["source"] = df["source"].astype(str)
-    return df
-
-
-is_sorted = Check(lambda df: df.equals(sort_versions(df)), error="Data must be sorted")
-archive_has_url = Check(
-    lambda df: df.loc[df["source"] == "archive", "url"].str.len().gt(0).all(),
-    error="Archive entries must have a URL",
-)
-one_latest_per_dataset_source = Check(
-    lambda df: (
-        df[df["tags"].str.contains("latest")]
-        .groupby(["dataset", "source"])
-        .size()
-        .eq(1)
-        .all()
-    ),
-    error="Exactly one 'latest' tag required per dataset/source combination",
-)
-latest_same_version_across_sources = Check(
-    lambda df: (
-        df[(df["tags"].str.contains("latest")) & (df["version"] != "unknown")]
-        .groupby("dataset")["version"]
-        .nunique()
-        .le(1)
-        .all()
-    ),
-    error="All 'latest' entries for a dataset must have the same version across sources (excluding 'unknown')",
-)
-VersionsSchema = pa.DataFrameSchema(
-    {
-        "dataset": Column(str, not_empty, nullable=False),
-        "version": Column(str, not_empty + [url_safe], nullable=False),
-        "source": Column(str, Check.isin(VALID_SOURCES)),
-        "tags": Column(str, valid_tags, nullable=False),
-        "added": Column(
-            str,
-            Check.str_matches(r"^\d{4}-\d{2}-\d{2}$"),
-            nullable=False,
-            coerce=True,
-            default=date.today().isoformat(),
-        ),
-        "note": Column(str, nullable=True),
-        "url": Column(
-            str,
-            Check.str_matches(
-                r'^(https?://[^:\s<>"|*]*)?$',
-                error='URL must start with http(s):// and not contain colons (use %3A), spaces, or Windows-invalid characters (<>"|*).',
-            ),
-            nullable=True,
-        ),
-    },
-    checks=[
-        is_sorted,
-        archive_has_url,
-        one_latest_per_dataset_source,
-        latest_same_version_across_sources,
-    ],
-    coerce=True,
-    strict=True,
-    ordered=True,
-    unique=["dataset", "version", "source"],
-)
 
-
-def load_versions() -> pd.DataFrame:
-    return pd.read_csv(VERSIONS_CSV, dtype=str, keep_default_na=False)
-
-
-def validate_versions(fix: bool = False) -> pd.DataFrame:
-    df = load_versions()
+@pytest.mark.parametrize("file", VERSIONS_PATHS, ids=[str(p) for p in VERSIONS_PATHS])
+def test_versions_csv(pytestconfig, file):
+    fix = pytestconfig.getoption("fix")
+    df = _load_data_version(file, validate=False)
     if fix:
         df = sort_versions(df)
     try:
         df = VersionsSchema.validate(df, lazy=True)
     except pa.errors.SchemaErrors as e:
-        msg = f"{e.message}\n\nTry 'pixi run python test/test_data_versions_layer.py' to auto-fix (sorting, defaults, etc.)."
+        if fix:
+            msg = f"{e.message}\n\nAttempted to automatically fix the `{file.name}` version file but above issues still persist."
+        else:
+            msg = f"{e.message}\n\nTry `pixi run -e test pytest test/test_data_versions_layer.py --fix` to attempt to fix the `{file.name}` version file."
         e.message = msg
         raise
     if fix:
-        df.to_csv(VERSIONS_CSV, index=False)
-    return df
-
-
-def test_versions_csv():
-    validate_versions()
-
-
-if __name__ == "__main__":
-    validate_versions(fix=True)
-    print("versions.csv validated and fixed")
+        if file.suffix.lower() in {".yaml", ".yml"}:
+            yaml_df = df.to_dict(orient="records")
+            file.write_text(yaml.safe_dump(yaml_df, sort_keys=False))
+        else:
+            df.to_csv(file, index=False)
+
+
+def test_load_data_versions_combined(tmp_path):
+    """Test that load_data_versions correctly combines multiple files."""
+    file_1 = tmp_path / "versions_1.csv"
+    file_2 = tmp_path / "versions_2.yaml"
+    file_1.write_text(
+        "dataset,version,source,tags,added,note,url\n"
+        "dataset1,1.0,primary,latest supported,2024-01-01,,http://example.com/1\n"
+        "dataset2,2.0,archive,supported,2024-01-02,,http://example.com/2\n"
+    )
+    file_2.write_text(
+        "- dataset: dataset1\n"
+        "  version: 1.1\n"
+        "  source: archive\n"
+        "  tags: supported\n"
+        "  added: 2024-01-03\n"
+        "  note: Updated version\n"
+        "  url: http://example.com/1.1\n"
+        "- dataset: dataset2\n"
+        "  version: 2.0\n"
+        "  source: archive\n"
+        "  tags: supported\n"
+        "  added: 2024-01-03\n"
+        "  note: Updated version\n"
+        "  url: http://example.com/2.1\n"
+        "- dataset: dataset3\n"
+        "  version: 3.0\n"
+        "  source: primary\n"
+        "  tags: latest supported\n"
+        "  added: 2024-01-04\n"
+        "  note: New dataset\n"
+        "  url: http://example.com/3\n"
+    )
+    combined_df = load_data_versions(file_1, file_2)
+    expected_df = pd.DataFrame(
+        {
+            "dataset": ["dataset1", "dataset1", "dataset2", "dataset3"],
+            "version": ["1.0", "1.1", "2.0", "3.0"],
+            "source": ["primary", "archive", "archive", "primary"],
+            "tags": [
+                ["latest", "supported"],
+                ["supported"],
+                ["supported"],
+                ["latest", "supported"],
+            ],
+            "added": ["2024-01-01", "2024-01-03", "2024-01-03", "2024-01-04"],
+            "note": ["", "Updated version", "Updated version", "New dataset"],
+            "url": [
+                "http://example.com/1",
+                "http://example.com/1.1",
+                "http://example.com/2.1",
+                "http://example.com/3",
+            ],
+            "latest": [True, False, False, True],
+            "supported": [True, True, True, True],
+        },
+        index=[0, 1, 2, 3],
+    )
+    pd.testing.assert_frame_equal(combined_df, expected_df)

From ebd0cbe1a51cb7067570daf38ae51d2586ea36ac Mon Sep 17 00:00:00 2001
From: Michael Lindner <michaellindner@posteo.de>
Date: Sat, 4 Jul 2026 15:24:30 +0200
Subject: [PATCH 18/22] Fix future warnings (#2220)

* claude: fix deprecation warnings

* pre-commit
---
 scripts/_helpers.py                 |  4 +---
 scripts/base_network.py             |  4 +++-
 scripts/build_biomass_potentials.py |  9 ++++++++-
 scripts/build_energy_totals.py      | 17 ++++++++++++++---
 scripts/simplify_network.py         |  5 ++++-
 5 files changed, 30 insertions(+), 9 deletions(-)

diff --git a/scripts/_helpers.py b/scripts/_helpers.py
index 17b8b444a3..ed5357f998 100644
--- a/scripts/_helpers.py
+++ b/scripts/_helpers.py
@@ -914,9 +914,7 @@ def get_snapshots(
         )
         time_periods.append(period)
 
-    time = pd.DatetimeIndex([])
-    for period in time_periods:
-        time = time.append(period)
+    time = pd.DatetimeIndex([ts for period in time_periods for ts in period])
 
     if drop_leap_day and time.is_leap_year.any():
         time = time[~((time.month == 2) & (time.day == 29))]
diff --git a/scripts/base_network.py b/scripts/base_network.py
index 35598f329f..321bd7f034 100644
--- a/scripts/base_network.py
+++ b/scripts/base_network.py
@@ -424,7 +424,9 @@ def _remove_dangling_branches(branches, buses):
 
 
 def _remove_unconnected_components(network, threshold=6):
-    _, labels = csgraph.connected_components(network.adjacency_matrix(), directed=False)
+    _, labels = csgraph.connected_components(
+        network.adjacency_matrix(return_dataframe=False), directed=False
+    )
     component = pd.Series(labels, index=network.buses.index)
 
     component_sizes = component.value_counts()
diff --git a/scripts/build_biomass_potentials.py b/scripts/build_biomass_potentials.py
index be0d9bf3ff..99e491438d 100755
--- a/scripts/build_biomass_potentials.py
+++ b/scripts/build_biomass_potentials.py
@@ -14,6 +14,9 @@
 
 from scripts._helpers import configure_logging, set_scenario_config
 
+pd.set_option("future.no_silent_downcasting", True)
+
+
 logger = logging.getLogger(__name__)
 AVAILABLE_BIOMASS_YEARS = [2010, 2020, 2030, 2040, 2050]
 
@@ -329,7 +332,11 @@ def add_unsustainable_potentials(df, input_eurostat):
     share_sus = params.get("share_sustainable_potential_available").get(investment_year)
     df.loc[df_wo_ch.index] *= share_sus
 
-    df = df.join(df_wo_ch.filter(like="unsustainable")).fillna(0)
+    df = (
+        df.join(df_wo_ch.filter(like="unsustainable"))
+        .fillna(0)
+        .infer_objects(copy=False)
+    )
 
     return df
 
diff --git a/scripts/build_energy_totals.py b/scripts/build_energy_totals.py
index 9e778afdf1..e7930bbe3e 100644
--- a/scripts/build_energy_totals.py
+++ b/scripts/build_energy_totals.py
@@ -31,6 +31,9 @@
 
 from scripts._helpers import configure_logging, mute_print, set_scenario_config
 
+pd.set_option("future.no_silent_downcasting", True)
+
+
 cc = coco.CountryConverter()
 logger = logging.getLogger(__name__)
 idx = pd.IndexSlice
@@ -657,7 +660,9 @@ def build_energy_totals(
                 df[f"total {sector} {use}"] - df[f"electricity {sector} {use}"]
             )
             nonelectric = df[f"total {sector}"] - df[f"electricity {sector}"]
-            nonelectric = nonelectric.copy().replace(0, np.nan)
+            nonelectric = (
+                nonelectric.copy().replace(0, np.nan).infer_objects(copy=False)
+            )
             avg = nonelectric_use.div(nonelectric).mean()
             logger.debug(
                 f"{sector}: average fraction of non-electric for {use} is {avg:.3f}"
@@ -694,7 +699,9 @@ def build_energy_totals(
                 nonelectric = (
                     no_norway[f"total {sector}"] - no_norway[f"electricity {sector}"]
                 )
-                nonelectric = nonelectric.copy().replace(0, np.nan)
+                nonelectric = (
+                    nonelectric.copy().replace(0, np.nan).infer_objects(copy=False)
+                )
                 fraction = nonelectric_use.div(nonelectric).mean()
                 df.loc["NO", f"total {sector} {use}"] = (
                     total_heating * fraction
@@ -827,6 +834,7 @@ def build_district_heat_share(countries: list[str], idees: pd.DataFrame) -> pd.S
         idees[["thermal uses residential", "thermal uses services"]]
         .sum(axis=1)
         .replace(0, np.nan)
+        .infer_objects(copy=False)
     )
 
     district_heat_share = district_heat / total_heat
@@ -853,7 +861,10 @@ def build_district_heat_share(countries: list[str], idees: pd.DataFrame) -> pd.S
 
     # restrict to available years
     district_heat_share = (
-        district_heat_share.unstack().dropna(how="all", axis=1).ffill(axis=1)
+        district_heat_share.unstack()
+        .dropna(how="all", axis=1)
+        .ffill(axis=1)
+        .infer_objects(copy=False)
     )
 
     return district_heat_share
diff --git a/scripts/simplify_network.py b/scripts/simplify_network.py
index f94c6df043..4e409a7159 100644
--- a/scripts/simplify_network.py
+++ b/scripts/simplify_network.py
@@ -119,6 +119,7 @@ def simplify_links(
     adjacency_matrix = n.adjacency_matrix(
         branch_components=["Link"],
         weights=dict(Link=(n.links.carrier == "DC").astype(float)),
+        return_dataframe=False,
     )
 
     _, labels = connected_components(adjacency_matrix, directed=False)
@@ -296,7 +297,9 @@ def aggregate_to_substations(
         }
     )
 
-    adj = n.adjacency_matrix(branch_components=["Line", "Link"], weights=weight).tocsr()
+    adj = n.adjacency_matrix(
+        branch_components=["Line", "Link"], weights=weight, return_dataframe=False
+    ).tocsr()
 
     no_substation_i = n.buses.index.difference(substation_i)
     bus_indexer = n.buses.index.get_indexer(substation_i)

From e82c258f9dde628c2a8a3814c6ce2d78506f4a20 Mon Sep 17 00:00:00 2001
From: Thomas Gilon <thomas.gilon@openenergytransition.org>
Date: Mon, 6 Jul 2026 16:16:43 +0200
Subject: [PATCH 19/22] refactor: solve merge conflicts

---
 .github/ISSUE_TEMPLATE/1-bug-community.yaml    |  2 ++
 .../ISSUE_TEMPLATE/2-feature-community.yaml    |  2 ++
 .github/ISSUE_TEMPLATE/3-bug-maintainer.yaml   |  2 ++
 .../4-feature-maintainer-parent.yaml           |  2 ++
 .../5-feature-maintainer-sub.yaml              |  2 ++
 .github/ISSUE_TEMPLATE/6-spike-maintainer.yaml |  2 ++
 rules/common.smk                               |  7 -------
 scripts/lib/validation/config/data.py          | 18 ++++++++++++++----
 8 files changed, 26 insertions(+), 11 deletions(-)

diff --git a/.github/ISSUE_TEMPLATE/1-bug-community.yaml b/.github/ISSUE_TEMPLATE/1-bug-community.yaml
index 0bef035992..b0e77c1741 100644
--- a/.github/ISSUE_TEMPLATE/1-bug-community.yaml
+++ b/.github/ISSUE_TEMPLATE/1-bug-community.yaml
@@ -11,6 +11,8 @@ body:
 
       Please do not post usage questions here. Ask them on the [PyPSA/Open-TYNDP Discord channel](https://discord.com/channels/911692131440148490/1414977512089321564) or contact tyndp@openenergytransition.org.
 
+      Please write this issue description yourself. Any potentially verbose AI-generated content should be marked.
+
 - type: checkboxes
   id: version_checks
   attributes:
diff --git a/.github/ISSUE_TEMPLATE/2-feature-community.yaml b/.github/ISSUE_TEMPLATE/2-feature-community.yaml
index ba8d83490f..3a01fa746d 100644
--- a/.github/ISSUE_TEMPLATE/2-feature-community.yaml
+++ b/.github/ISSUE_TEMPLATE/2-feature-community.yaml
@@ -11,6 +11,8 @@ body:
 
       Please do not post usage questions here. Ask them on the [PyPSA/Open-TYNDP Discord channel](https://discord.com/channels/911692131440148490/1414977512089321564) or contact tyndp@openenergytransition.org.
 
+      Please write this issue description yourself. Any potentially verbose AI-generated content should be marked.
+
 - type: checkboxes
   id: affected_component
   attributes:
diff --git a/.github/ISSUE_TEMPLATE/3-bug-maintainer.yaml b/.github/ISSUE_TEMPLATE/3-bug-maintainer.yaml
index 7643704803..1cd20a8d1b 100644
--- a/.github/ISSUE_TEMPLATE/3-bug-maintainer.yaml
+++ b/.github/ISSUE_TEMPLATE/3-bug-maintainer.yaml
@@ -11,6 +11,8 @@ body:
 
       Please do not post usage questions here. Ask them on the [PyPSA/Open-TYNDP Discord channel](https://discord.com/channels/911692131440148490/1414977512089321564) or contact tyndp@openenergytransition.org.
 
+      Please write this issue description yourself. Any potentially verbose AI-generated content should be marked.
+
 - type: checkboxes
   id: version_checks
   attributes:
diff --git a/.github/ISSUE_TEMPLATE/4-feature-maintainer-parent.yaml b/.github/ISSUE_TEMPLATE/4-feature-maintainer-parent.yaml
index 0480bf5462..fc1a15982a 100644
--- a/.github/ISSUE_TEMPLATE/4-feature-maintainer-parent.yaml
+++ b/.github/ISSUE_TEMPLATE/4-feature-maintainer-parent.yaml
@@ -12,6 +12,8 @@ body:
 
       This template is for high-level parent issues that will be broken down into sub-issues. Use the ["Feature - Sub Issue (Maintainer)"](https://github.com/open-energy-transition/open-tyndp/issues/new?template=5-feature-maintainer-sub.yaml) template for detailed feature requests. Security and risk assessment is captured at this sub-issue level.
 
+      Please write this issue description yourself. Any potentially verbose AI-generated content should be marked.
+
 - type: checkboxes
   id: affected_component
   attributes:
diff --git a/.github/ISSUE_TEMPLATE/5-feature-maintainer-sub.yaml b/.github/ISSUE_TEMPLATE/5-feature-maintainer-sub.yaml
index 1de1b724b8..d767bc19d1 100644
--- a/.github/ISSUE_TEMPLATE/5-feature-maintainer-sub.yaml
+++ b/.github/ISSUE_TEMPLATE/5-feature-maintainer-sub.yaml
@@ -12,6 +12,8 @@ body:
 
       This template is for detailed feature requests. Use the ["Feature - Parent Issue (Maintainer)"](https://github.com/open-energy-transition/open-tyndp/issues/new?template=4-feature-maintainer-parent.yaml) template for high-level parent issues that will be broken down into sub-issues.
 
+      Please write this issue description yourself. Any potentially verbose AI-generated content should be marked.
+
 - type: input
   id: parent_issue
   attributes:
diff --git a/.github/ISSUE_TEMPLATE/6-spike-maintainer.yaml b/.github/ISSUE_TEMPLATE/6-spike-maintainer.yaml
index 01b32cd1ae..2339b93148 100644
--- a/.github/ISSUE_TEMPLATE/6-spike-maintainer.yaml
+++ b/.github/ISSUE_TEMPLATE/6-spike-maintainer.yaml
@@ -12,6 +12,8 @@ body:
 
       Spikes are exploratory issues meant to gather information and explore concepts. They typically don't result in PRs but help inform future implementation decisions.
 
+      Please write this issue description yourself. Any potentially verbose AI-generated content should be marked.
+
 - type: input
   id: parent_issue
   attributes:
diff --git a/rules/common.smk b/rules/common.smk
index e24530c248..79271d8e08 100644
--- a/rules/common.smk
+++ b/rules/common.smk
@@ -87,7 +87,6 @@ def config_provider(*keys, default=None):
 def dataset_version(
     name: str,
     all_versions: bool = False,
-    version: str | None = None,
     **dataset_config_overrides: str,
 ) -> pd.Series | pd.DataFrame:
     """
@@ -102,9 +101,6 @@ def dataset_version(
         The name of the dataset to retrieve version information for.
     all_versions: bool
         Whether to return all supported versions instead of the configured one.
-    version: str | None
-        Override to use configured version from different config source (e.g. for using a pre-solved SB network in the CBA,
-        where the version is defined in `cba.cba_scenario_input.sb_version`)
     **dataset_config_overrides : str
         entries to override the dataset config for the given `name`.
 
@@ -119,9 +115,6 @@ def dataset_version(
     dataset_config = {**config["data"][name], **dataset_config_overrides}
     data_version_files = config["data"]["version_files"]
 
-    if version is None:
-        version = dataset_config["version"]
-
     data_versions = load_data_versions(
         *(
             (PROJ_DIR / path if not (path := Path(file)).is_absolute() else path)
diff --git a/scripts/lib/validation/config/data.py b/scripts/lib/validation/config/data.py
index a71b5e0fdf..4479d74e3b 100644
--- a/scripts/lib/validation/config/data.py
+++ b/scripts/lib/validation/config/data.py
@@ -20,7 +20,12 @@
 
 from scripts.lib.validation.config._base import ConfigModel
 
-VALID_SOURCES = ["primary", "archive", "build"]  # Order defines sort priority
+VALID_SOURCES = [
+    "primary",
+    "archive",
+    "tyndp-archive",
+    "build",
+]  # Order defines sort priority
 
 VALID_TAGS = {
     "latest",
@@ -35,8 +40,8 @@
 not_empty = [Check.str_length(min_value=1), Check.str_matches(r"\S")]
 valid_tags = Check(lambda s: all(t in VALID_TAGS for t in s.split()), element_wise=True)
 url_safe = Check.str_matches(
-    r"^[a-z0-9_\-\.]+$",
-    error="Version must be URL-safe (only alphanumeric, hyphen, underscore, dot)",
+    r"^[a-z0-9_\-\.+]+$",
+    error="Version must be URL-safe (only alphanumeric, hyphen, underscore, dot, plus)",
 )
 
 
@@ -57,7 +62,12 @@ def sort_versions(df: pd.DataFrame) -> pd.DataFrame:
 
 is_sorted = Check(lambda df: df.equals(sort_versions(df)), error="Data must be sorted")
 archive_has_url = Check(
-    lambda df: df.loc[df["source"] == "archive", "url"].str.len().gt(0).all(),
+    lambda df: (
+        df.loc[df["source"].isin({"archive", "tyndp-archive"}), "url"]
+        .str.len()
+        .gt(0)
+        .all()
+    ),
     error="Archive entries must have a URL",
 )
 one_latest_per_dataset_source = Check(

From 15d00012ba7143ce645d19c3bae85bb227fa50d1 Mon Sep 17 00:00:00 2001
From: Thomas Gilon <thomas.gilon@openenergytransition.org>
Date: Mon, 6 Jul 2026 16:21:06 +0200
Subject: [PATCH 20/22] chore: unpin linopy version

---
 envs/default_linux-64.pin.txt  |  105 +-
 envs/default_osx-64.pin.txt    |  101 +-
 envs/default_osx-arm64.pin.txt |  105 +-
 envs/default_win-64.pin.txt    |  106 +-
 envs/environment.yaml          |    2 +-
 pixi.lock                      | 4155 +++++++++++++-------------------
 pixi.toml                      |    2 +-
 7 files changed, 1912 insertions(+), 2664 deletions(-)

diff --git a/envs/default_linux-64.pin.txt b/envs/default_linux-64.pin.txt
index 2d6f3558b5..684f3ebbbe 100644
--- a/envs/default_linux-64.pin.txt
+++ b/envs/default_linux-64.pin.txt
@@ -14,7 +14,7 @@ https://conda.anaconda.org/conda-forge/noarch/python_abi-3.14-8_cp314.conda#0539
 https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2026.6.17-hbd8a1cb_0.conda#a9965dd99f683c5f444428f896635716
 https://conda.anaconda.org/conda-forge/linux-64/openssl-3.6.3-h35e630c_0.conda#79dd2074b5cd5c5c6b2930514a11e22d
 https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.42.2-h5347b49_0.conda#01bb81d12c957de066ea7362007df642
-https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.53.2-h0c1763c_0.conda#062b0ac602fb0adf250e3dfa86f221c4
+https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.53.3-h0c1763c_0.conda#4aed8e657e9ff156bdbe849b4df44389
 https://conda.anaconda.org/conda-forge/linux-64/libmpdec-4.0.0-hb03c661_1.conda#2c21e66f50753a083cbe6b80f38268fa
 https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.3-hb03c661_0.conda#b88d90cad08e6bc8ad540cb310a761fb
 https://conda.anaconda.org/conda-forge/linux-64/libffi-3.5.2-h3435931_0.conda#a360c33a5abe61c07959e449fa1453eb
@@ -93,7 +93,7 @@ https://conda.anaconda.org/conda-forge/noarch/dpath-2.2.0-pyha770c72_1.conda#7b2
 https://conda.anaconda.org/conda-forge/noarch/yte-1.9.4-pyhd8ed1ab_0.conda#89d5edf5d52d3bc1ed4d7d3feef508ba
 https://conda.anaconda.org/conda-forge/noarch/tabulate-0.10.0-pyhcf101f3_0.conda#3b887b7b3468b0f494b4fad40178b043
 https://conda.anaconda.org/conda-forge/noarch/typing-extensions-4.15.0-h396c80c_0.conda#edd329d7d3a4ab45dcf905899a7a6115
-https://conda.anaconda.org/conda-forge/linux-64/greenlet-3.5.2-py314h42812f9_0.conda#5fef7ee7545d98388c129de1a47537bb
+https://conda.anaconda.org/conda-forge/linux-64/greenlet-3.5.3-py314h42812f9_0.conda#82a0491c0457c046b0da5d34cdd617cd
 https://conda.anaconda.org/conda-forge/linux-64/sqlalchemy-2.0.51-py314h0f05182_0.conda#aeb7447f3ea37b2bb32167267dcf0bfe
 https://conda.anaconda.org/conda-forge/noarch/typing-inspection-0.4.2-pyhcf101f3_2.conda#53f5409c5cfd6c5a66417d68e3f0a864
 https://conda.anaconda.org/conda-forge/linux-64/pydantic-core-2.46.4-py314h2e6c369_0.conda#0c96993dbeadf3a277cf757b9f1c9412
@@ -104,8 +104,8 @@ https://conda.anaconda.org/bioconda/noarch/snakemake-interface-scheduler-plugins
 https://conda.anaconda.org/bioconda/noarch/snakemake-interface-report-plugins-1.3.0-pyhd4c3c12_0.conda#e6fd8cfb23b294da699e395dbc968d11
 https://conda.anaconda.org/bioconda/noarch/snakemake-interface-logger-plugins-2.1.0-pyhdfd78af_0.conda#78f0a9e3ec845ef8e35e319bc36dee9b
 https://conda.anaconda.org/bioconda/noarch/snakemake-interface-executor-plugins-9.4.0-pyh84498cf_0.conda#0d8bbf1699b16ac225031ae0c73729f8
-https://conda.anaconda.org/conda-forge/noarch/smart_open-7.6.1-pyhcf101f3_0.conda#8e4971d25d53f168dfb64d6f5ee1316d
-https://conda.anaconda.org/conda-forge/linux-64/rpds-py-2026.5.1-py314h1bee95f_0.conda#fb5b4fc759b225d4f32730cc8380ec8e
+https://conda.anaconda.org/conda-forge/noarch/smart_open-7.7.1-pyhcf101f3_0.conda#fd2e276dbbd1a2ae15ffdbdbabd908f1
+https://conda.anaconda.org/conda-forge/linux-64/rpds-py-2026.6.3-py314h1bee95f_0.conda#add3cbcc5eb677f6c1720e01cd82aac5
 https://conda.anaconda.org/conda-forge/noarch/attrs-26.1.0-pyhcf101f3_0.conda#c6b0543676ecb1fb2d7643941fe375f2
 https://conda.anaconda.org/conda-forge/noarch/referencing-0.37.0-pyhcf101f3_0.conda#870293df500ca7e18bedefa5838a22ab
 https://conda.anaconda.org/conda-forge/linux-64/liblapacke-3.11.0-8_hb041515_netlib.conda#f8a6ea387ec3f0e43ee193c3ab33b959
@@ -141,11 +141,11 @@ https://conda.anaconda.org/conda-forge/noarch/markdown-it-py-4.2.0-pyhd8ed1ab_0.
 https://conda.anaconda.org/conda-forge/noarch/rich-15.0.0-pyhcf101f3_0.conda#0242025a3c804966bf71aa04eee82f66
 https://conda.anaconda.org/conda-forge/noarch/colorama-0.4.6-pyhd8ed1ab_1.conda#962b9857ee8e7018c22f2776ffa0b2d7
 https://conda.anaconda.org/conda-forge/noarch/annotated-doc-0.0.4-pyhcf101f3_0.conda#52be5139047efadaeeb19c6a5103f92a
-https://conda.anaconda.org/conda-forge/noarch/typer-0.26.7-pyhcf101f3_0.conda#71d2c80673511fab927bd15592994030
+https://conda.anaconda.org/conda-forge/noarch/typer-0.26.8-pyhcf101f3_0.conda#8bd9c1e0ff3a31a11e21c3f04c2d0f8b
 https://conda.anaconda.org/conda-forge/noarch/mdit-py-plugins-0.6.1-pyhd8ed1ab_0.conda#ad6821df7a98510117db06e9a833281f
 https://conda.anaconda.org/conda-forge/noarch/uc-micro-py-2.0.0-pyhcf101f3_0.conda#4fdd327852ffefc83173a7c029690d0c
 https://conda.anaconda.org/conda-forge/noarch/linkify-it-py-2.1.0-pyhcf101f3_0.conda#1005e1f39083adad2384772e8e384e43
-https://conda.anaconda.org/conda-forge/noarch/textual-8.2.7-pyhcf101f3_0.conda#942b41d6058c938355781fd589656b06
+https://conda.anaconda.org/conda-forge/noarch/textual-8.2.8-pyhcf101f3_0.conda#89f2b015d7ee36ceaaf03fe687d1bd61
 https://conda.anaconda.org/conda-forge/noarch/loguru-0.7.3-pyh707e725_0.conda#49647ac1de4d1e4b49124aedf3934e02
 https://conda.anaconda.org/conda-forge/noarch/python-yakh-0.4.1-pyhff2d567_0.conda#7d2e90221b5da6f0577d150cfe6b87ed
 https://conda.anaconda.org/conda-forge/noarch/questo-0.4.2-pyhcf101f3_0.conda#d408fa8ff9f17887378715dcf024d359
@@ -155,7 +155,7 @@ https://conda.anaconda.org/conda-forge/noarch/tomli-2.4.1-pyhcf101f3_0.conda#b53
 https://conda.anaconda.org/conda-forge/noarch/zipp-4.1.0-pyhcf101f3_0.conda#ba3dcdc8584155c97c648ae9c044b7a3
 https://conda.anaconda.org/conda-forge/noarch/importlib-metadata-9.0.0-pyhcf101f3_0.conda#ffc17e785d64e12fc311af9184221839
 https://conda.anaconda.org/conda-forge/noarch/mako-1.3.12-pyhcf101f3_0.conda#a73036dabdd6dfe9679ed893baa8b230
-https://conda.anaconda.org/conda-forge/noarch/alembic-1.18.4-pyhcf101f3_0.conda#c45fa7cf996b766cb63eadf3c3e6408a
+https://conda.anaconda.org/conda-forge/noarch/alembic-1.18.5-pyhcf101f3_0.conda#5e2f9d485f398f312a6b0f17e11d9c6f
 https://conda.anaconda.org/conda-forge/noarch/aiosqlite-0.21.0-pyhaa4b35c_0.conda#f3549a4607ecf6f0bdbb4afe9b05f2d2
 https://conda.anaconda.org/bioconda/noarch/snkmt-0.4.0-pyhdfd78af_0.conda#38ba1f1279491d848303cd050dfe56cc
 https://conda.anaconda.org/bioconda/noarch/snakemake-logger-plugin-snkmt-0.1.6-pyhdfd78af_0.conda#8fbd31325e6fbb325e15625471b44dfc
@@ -167,7 +167,7 @@ https://conda.anaconda.org/conda-forge/linux-64/ruamel.yaml.clib-0.2.15-py314h0f
 https://conda.anaconda.org/conda-forge/noarch/ruamel.yaml-0.19.1-pyhcf101f3_0.conda#06ad944772941d5dae1e0d09848d8e49
 https://conda.anaconda.org/conda-forge/noarch/xarray-2025.6.1-pyhd8ed1ab_1.conda#145c6f2ac90174d9ad1a2a51b9d7c1dd
 https://conda.anaconda.org/conda-forge/noarch/snuggs-1.4.7-pyhd8ed1ab_2.conda#9aa358575bbd4be126eaa5e0039f835c
-https://conda.anaconda.org/conda-forge/linux-64/sqlite-3.53.2-hbc0de68_0.conda#38d9bf35a4cc83094a327811e548b660
+https://conda.anaconda.org/conda-forge/linux-64/sqlite-3.53.3-hbc0de68_0.conda#b345ea7f13e4cae9809c69b1d1af2c99
 https://conda.anaconda.org/conda-forge/linux-64/libwebp-base-1.6.0-hd42ef1d_0.conda#aea31d2e5b1091feca96fcfe945c3cf9
 https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-3.1.4.1-hb03c661_0.conda#6178c6f2fb254558238ef4e6c56fb782
 https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.25-h17f619e_0.conda#6c77a605a7a689d17d4819c0f8ac9a00
@@ -181,7 +181,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.68.1-h877daf1_0.con
 https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20250104-pl5321h7949ede_0.conda#c277e0a4d549b03ac1e9d6cbbe3d017b
 https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.3-hb9d3cd8_0.conda#b38117a3c920364aff79f870c984b4a3
 https://conda.anaconda.org/conda-forge/linux-64/krb5-1.22.2-hbde042b_1.conda#54157a1c8c0bb70f62dd0b17fba7e7f2
-https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.21.0-hcf29cc6_0.conda#dcd79cabd5d435f48d75db3d81cb5874
+https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.21.0-hcf29cc6_1.conda#2c1e55d695b11525c760b486ac0be517
 https://conda.anaconda.org/conda-forge/linux-64/proj-9.7.1-he0df7b0_3.conda#031e33ae075b336c0ce92b14efa886c5
 https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hb9d3cd8_1.conda#d864d34357c3b65a4b731f78c0801dc4
 https://conda.anaconda.org/conda-forge/linux-64/icu-78.3-h33c6efd_0.conda#c80d8a3b84358cb967fa81e7075fbc8a
@@ -196,7 +196,7 @@ https://conda.anaconda.org/conda-forge/linux-64/zlib-1.3.2-h25fd6f3_2.conda#c2a0
 https://conda.anaconda.org/conda-forge/linux-64/libxml2-devel-2.15.3-h49c6c72_0.conda#be70cb50dd0ecc1531c58034d38f72e0
 https://conda.anaconda.org/conda-forge/linux-64/geos-3.14.1-h480dda7_0.conda#4d4efd0645cd556fab54617c4ad477ef
 https://conda.anaconda.org/conda-forge/linux-64/librttopo-1.1.0-h46dd2a8_20.conda#df81fd57eacf341588d728c97920e86d
-https://conda.anaconda.org/conda-forge/linux-64/minizip-4.2.1-hb71707f_0.conda#fe7b4ff5792fee512aad843294ea809a
+https://conda.anaconda.org/conda-forge/linux-64/minizip-4.2.2-hb71707f_0.conda#88450ba743694055e218d03a2fdd561e
 https://conda.anaconda.org/conda-forge/linux-64/freexl-2.0.0-h9dce30a_2.conda#ecb5d11305b8ba1801543002e69d2f2f
 https://conda.anaconda.org/conda-forge/linux-64/libspatialite-5.1.0-gpl_h2abfd87_119.conda#887245164c408c289d0cb45bd508ce5f
 https://conda.anaconda.org/conda-forge/linux-64/libpng-1.6.58-h421ea60_0.conda#eba48a68a1a2b9d3c0d9511548db85db
@@ -257,7 +257,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libfreetype6-2.14.3-h73754d4_0.c
 https://conda.anaconda.org/conda-forge/linux-64/libfreetype-2.14.3-ha770c72_0.conda#e289f3d17880e44b633ba911d57a321b
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@@ -463,6 +440,8 @@ https://conda.anaconda.org/conda-forge/linux-64/libegl-devel-1.7.0-ha4b6fd6_3.co
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@@ -473,7 +452,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libllvm22-22.1.8-hf7376ad_1.cond
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@@ -483,7 +462,7 @@ https://conda.anaconda.org/conda-forge/noarch/pure_eval-0.2.3-pyhd8ed1ab_1.conda
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diff --git a/envs/default_osx-64.pin.txt b/envs/default_osx-64.pin.txt
index 4eedf5f6a2..98d3f30406 100644
--- a/envs/default_osx-64.pin.txt
+++ b/envs/default_osx-64.pin.txt
@@ -11,7 +11,7 @@ https://conda.anaconda.org/conda-forge/noarch/python_abi-3.14-8_cp314.conda#0539
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@@ -104,8 +104,8 @@ https://conda.anaconda.org/bioconda/noarch/snakemake-interface-scheduler-plugins
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-https://conda.anaconda.org/conda-forge/osx-64/rpds-py-2026.5.1-py314h1d56075_0.conda#33f48e40d93c6e74f47b5a1f316c8cad
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diff --git a/envs/default_osx-arm64.pin.txt b/envs/default_osx-arm64.pin.txt
index 8f09d60966..6fc85b24d1 100644
--- a/envs/default_osx-arm64.pin.txt
+++ b/envs/default_osx-arm64.pin.txt
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@@ -104,8 +103,8 @@ https://conda.anaconda.org/bioconda/noarch/snakemake-interface-scheduler-plugins
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diff --git a/envs/default_win-64.pin.txt b/envs/default_win-64.pin.txt
index cdda585bb9..38fbbbe7ed 100644
--- a/envs/default_win-64.pin.txt
+++ b/envs/default_win-64.pin.txt
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@@ -189,7 +189,7 @@ https://conda.anaconda.org/conda-forge/win-64/zlib-1.3.2-hfd05255_2.conda#5187ec
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@@ -246,7 +246,7 @@ https://conda.anaconda.org/conda-forge/win-64/libfreetype-2.14.3-h57928b3_1.cond
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+https://conda.anaconda.org/conda-forge/win-64/msgpack-python-1.2.1-py314hf309875_1.conda#2a6b2dce5b76d32c67d11fcdd88ef037
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+https://conda.anaconda.org/conda-forge/win-64/google-crc32c-1.8.0-py314h720154c_1.conda#a0a922d23c89200907da94cf4e2bdbaf
 https://conda.anaconda.org/conda-forge/noarch/donfig-0.8.1.post1-pyhd8ed1ab_1.conda#c56a7fa5597ad78b62e1f5d21f7f8b8f
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 https://conda.anaconda.org/conda-forge/noarch/semver-3.0.4-pyhcf101f3_1.conda#8e7be844ccb9706a999a337e056606ab
@@ -458,12 +442,12 @@ https://conda.anaconda.org/conda-forge/noarch/cached-property-1.5.2-hd8ed1ab_1.t
 https://conda.anaconda.org/conda-forge/win-64/h5py-3.16.0-nompi_py314hc249e69_102.conda#a97e08636b7aa2bb61b820082e8f5e4c
 https://conda.anaconda.org/conda-forge/noarch/h5netcdf-1.8.1-pyhd8ed1ab_0.conda#ca7f9ba8762d3e360e47917a10e23760
 https://conda.anaconda.org/conda-forge/noarch/jmespath-1.1.0-pyhcf101f3_1.conda#cc73a9bd315659dc5307a5270f44786f
-https://conda.anaconda.org/conda-forge/noarch/botocore-1.43.36-pyhd8ed1ab_0.conda#f5e09a21f1ee38e1be4787fea94e6823
+https://conda.anaconda.org/conda-forge/noarch/botocore-1.43.37-pyhd8ed1ab_0.conda#83f888a30df137f1883700637df04958
 https://conda.anaconda.org/conda-forge/noarch/s3transfer-0.19.0-pyhd8ed1ab_0.conda#a359066b94e013283b7e11559fbb19fc
-https://conda.anaconda.org/conda-forge/noarch/boto3-1.43.36-pyhd8ed1ab_0.conda#f740e8acb38ea16c22e60b6fc0ae7c9e
+https://conda.anaconda.org/conda-forge/noarch/boto3-1.43.37-pyhd8ed1ab_0.conda#9b8338a856b26a8d9dba5ffeb0a764a6
 https://conda.anaconda.org/conda-forge/noarch/arcosparse-0.5.1-pyhd8ed1ab_0.conda#3fab2110d93a828f88ace66e418d6ef8
 https://conda.anaconda.org/conda-forge/noarch/copernicusmarine-2.4.1-pyhd8ed1ab_0.conda#690847cdb78772816f430fc91490f915
-https://conda.anaconda.org/conda-forge/noarch/pyshp-3.1.2-pyhcf101f3_0.conda#0b9176cd15bf526d74fd6638df5194af
+https://conda.anaconda.org/conda-forge/noarch/pyshp-3.1.4-pyhcf101f3_0.conda#45d60067e867abbcd271189506da5749
 https://conda.anaconda.org/conda-forge/win-64/cartopy-0.25.0-py314hd8fd7ce_1.conda#f087cf669551d9c98b68869395f311f4
 https://conda.anaconda.org/conda-forge/noarch/pluggy-1.6.0-pyhf9edf01_1.conda#d7585b6550ad04c8c5e21097ada2888e
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diff --git a/envs/environment.yaml b/envs/environment.yaml
index 2ff5784980..37c357503c 100644
--- a/envs/environment.yaml
+++ b/envs/environment.yaml
@@ -26,7 +26,7 @@ dependencies:
 - ipython >=9.7.0
 - jpype1 >=1.6.0
 - libgdal-netcdf >=3.10.3
-- linopy >=0.6.1,<0.7.0
+- linopy >=0.6.1
 - lxml >=6.0.2
 - matplotlib >=3.10.7
 - memory_profiler >=0.61.0
diff --git a/pixi.lock b/pixi.lock
index a572214cf9..85a3cfd928 100644
--- a/pixi.lock
+++ b/pixi.lock
@@ -60,7 +60,7 @@ environments:
       - conda: https://conda.anaconda.org/conda-forge/linux-64/brotli-python-1.2.0-py314h3de4e8d_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_9.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.6-hb03c661_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/c-blosc2-3.1.4-hc31b594_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/c-blosc2-3.1.5-hc31b594_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/cairo-1.18.4-he90730b_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/cartopy-0.25.0-py314ha0b5721_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/cffi-2.0.0-py314h4a8dc5f_1.conda
@@ -85,23 +85,23 @@ environments:
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       - conda: https://conda.anaconda.org/conda-forge/linux-64/freexl-2.0.0-h9dce30a_2.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/fribidi-1.0.16-hb03c661_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/gdk-pixbuf-2.44.6-h2b0a6b4_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/gdk-pixbuf-2.44.7-h2b0a6b4_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/geos-3.14.1-h480dda7_0.conda
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       - conda: https://conda.anaconda.org/conda-forge/linux-64/giflib-5.2.2-hd590300_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/glib-tools-2.88.1-hee1de02_2.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/glib-tools-2.88.2-h8094192_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/glog-0.7.1-hbabe93e_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/glpk-5.0-h445213a_0.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/linux-64/gmp-6.3.0-hac33072_2.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/google-crc32c-1.8.0-py314hd6bf2bd_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/graphite2-1.3.15-hecca717_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/graphviz-14.1.2-h8b86629_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/greenlet-3.5.2-py314h42812f9_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/greenlet-3.5.3-py314h42812f9_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/grpcio-1.73.1-py314h2d847ca_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/gtk3-3.24.52-ha5ea40c_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/gts-0.7.6-h977cf35_4.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/h5py-3.16.0-nompi_py314hc32fe06_102.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/harfbuzz-14.2.1-h6083320_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/harfbuzz-14.2.1-ha770c72_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/hdf4-4.2.15-h2a13503_7.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/hdf5-1.14.6-nompi_h19486de_110.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/hicolor-icon-theme-0.17-ha770c72_3.conda
@@ -138,7 +138,7 @@ environments:
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libclang13-22.1.8-default_h9692865_3.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libcrc32c-1.1.2-h9c3ff4c_0.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libcups-2.3.3-h7a8fb5f_6.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.21.0-hcf29cc6_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.21.0-hcf29cc6_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.25-h17f619e_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libdrm-2.4.127-hb03c661_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20250104-pl5321h7949ede_0.conda
@@ -161,7 +161,7 @@ environments:
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       - conda: https://conda.anaconda.org/conda-forge/linux-64/libgl-1.7.0-ha4b6fd6_3.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libgl-devel-1.7.0-ha4b6fd6_3.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libglib-2.88.1-h0d30a3d_2.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libglib-2.88.2-h0d30a3d_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libglu-9.0.3-h5888daf_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libglvnd-1.7.0-ha4b6fd6_3.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libglx-1.7.0-ha4b6fd6_3.conda
@@ -170,6 +170,8 @@ environments:
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libgoogle-cloud-2.39.0-hdb79228_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libgoogle-cloud-storage-2.39.0-hdbdcf42_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libgrpc-1.73.1-h3288cfb_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libharfbuzz-14.2.1-h17a8019_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libharfbuzz-devel-14.2.1-h17a8019_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libhwloc-2.13.0-default_he001693_1000.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libhwy-1.4.0-h10be129_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.18-h3b78370_2.conda
@@ -191,16 +193,16 @@ environments:
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       - conda: https://conda.anaconda.org/conda-forge/linux-64/libpciaccess-0.19-hb03c661_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libpng-1.6.58-h421ea60_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libpq-18.4-hd5a49e9_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libpq-18.4-hd5a49e9_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libprotobuf-6.31.1-hfb7daa7_5.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libraqm-0.10.5-h75b3fb1_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libraqm-0.10.5-h6406941_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libre2-11-2025.11.05-h7b12aa8_0.conda
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       - conda: https://conda.anaconda.org/conda-forge/linux-64/librttopo-1.1.0-h46dd2a8_20.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libscotch-7.0.11-int64_h807e49d_3.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libspatialite-5.1.0-gpl_h2abfd87_119.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libspral-2025.09.18-h74cae3c_2.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.53.2-h0c1763c_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.53.3-h0c1763c_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.1-hcf80075_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-15.2.0-h934c35e_19.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-15.2.0-hdf11a46_19.conda
@@ -224,12 +226,12 @@ environments:
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       - conda: https://conda.anaconda.org/conda-forge/linux-64/lzo-2.10-h280c20c_1002.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/markupsafe-3.0.3-py314h67df5f8_1.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/matplotlib-3.11.0-py314hdafbbf9_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/matplotlib-base-3.11.0-py314h261f116_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/matplotlib-3.11.0-py314hdafbbf9_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/matplotlib-base-3.11.0-py314had63eae_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/metis-5.1.0-hd0bcaf9_1007.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/minizip-4.2.1-hb71707f_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/minizip-4.2.2-hb71707f_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/mpfr-4.2.2-he0a73b1_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/msgpack-python-1.2.1-py314h9891dd4_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/msgpack-python-1.2.1-py314h97ea11e_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/mumps-include-5.8.2-h5a610fb_2.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/mumps-seq-5.8.2-hc1b3267_2.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/muparser-2.3.5-h5888daf_0.conda
@@ -249,10 +251,9 @@ environments:
       - conda: https://conda.anaconda.org/conda-forge/linux-64/pcre2-10.47-haa7fec5_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/pillow-12.2.0-py314h8ec4b1a_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/pixman-0.46.4-h54a6638_1.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/polars-runtime-32-1.42.0-py310h49dadd8_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/polars-runtime-32-1.42.1-py310h49dadd8_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/proj-9.7.1-he0df7b0_3.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/prometheus-cpp-1.3.0-ha5d0236_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/protobuf-6.31.1-py314h503b32b_2.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/psutil-7.2.2-py314h0f05182_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-hb9d3cd8_1002.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/pulp-2.8.0-py314h312e2f4_3.conda
@@ -274,7 +275,7 @@ environments:
       - conda: https://conda.anaconda.org/conda-forge/linux-64/rasterio-1.5.0-py314ha1f92a4_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/re2-2025.11.05-h5301d42_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/readline-8.3-h853b02a_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/rpds-py-2026.5.1-py314h1bee95f_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/rpds-py-2026.6.3-py314h1bee95f_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/ruamel.yaml.clib-0.2.15-py314h0f05182_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/s2n-1.6.2-he8a4886_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/scikit-learn-1.8.0-np2py314hf09ca88_1.conda
@@ -284,7 +285,7 @@ environments:
       - conda: https://conda.anaconda.org/conda-forge/linux-64/simplejson-4.1.1-py314h5bd0f2a_0.conda
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-      - conda: https://conda.anaconda.org/conda-forge/linux-64/sqlite-3.53.2-hbc0de68_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/sqlite-3.53.3-hbc0de68_0.conda
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@@ -327,11 +328,8 @@ environments:
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-  size: 389744
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+    - c-blosc2 >=3.1.5,<3.2.0a0
+  size: 390948
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 - conda: https://conda.anaconda.org/conda-forge/linux-64/cairo-1.18.4-h3394656_0.conda
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/gdk-pixbuf-2.44.6-h2b0a6b4_0.conda
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-  md5: 7892f39a39ed39591a89a28eba03e987
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+  md5: 5d355db3e937086e22cf4cb5fe19787c
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-  - liblzma >=5.8.2,<6.0a0
-  - libpng >=1.6.56,<1.7.0a0
+  - libglib >=2.88.2,<3.0a0
+  - libjpeg-turbo >=3.1.4.1,<4.0a0
+  - liblzma >=5.8.3,<6.0a0
+  - libpng >=1.6.58,<1.7.0a0
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   license_family: LGPL
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-  size: 577414
-  timestamp: 1774985848058
+    - gdk-pixbuf >=2.44.7,<3.0a0
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/glib-tools-2.88.1-hee1de02_2.conda
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-  md5: e5a459d2bb98edb88de5a44bfad66b9d
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+  md5: cfe66c21ae651b84a3d25a1dbb641a54
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+  - libglib ==2.88.2 h0d30a3d_0
   - libffi
   - libgcc >=14
   - __glibc >=2.17,<3.0.a0
   license: LGPL-2.1-or-later
   run_exports: {}
-  size: 236955
-  timestamp: 1778508800134
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 - conda: https://conda.anaconda.org/conda-forge/linux-64/glog-0.7.1-hbabe93e_0.conda
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/greenlet-3.5.2-py312h8285ef7_0.conda
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-  md5: 7251536dab39be8e96f1f5e2dda3a7e8
+- conda: https://conda.anaconda.org/conda-forge/linux-64/greenlet-3.5.3-py312h8285ef7_0.conda
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+  md5: 314154aa48cbc025e5bb442ff8f25266
   depends:
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-  - libstdcxx >=14
   - libgcc >=14
   - __glibc >=2.17,<3.0.a0
+  - libstdcxx >=14
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   license: MIT
   license_family: MIT
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-  size: 265798
-  timestamp: 1781762125451
-- conda: https://conda.anaconda.org/conda-forge/linux-64/greenlet-3.5.2-py314h42812f9_0.conda
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-  md5: 5fef7ee7545d98388c129de1a47537bb
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   depends:
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-  - __glibc >=2.17,<3.0.a0
   - libstdcxx >=14
   - libgcc >=14
+  - __glibc >=2.17,<3.0.a0
   - python_abi 3.14.* *_cp314
   license: MIT
   license_family: MIT
   run_exports: {}
-  size: 267632
-  timestamp: 1781762129332
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/harfbuzz-14.2.1-h6083320_0.conda
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-  md5: 21ee4640b7c2d94e584349fa12b29b9a
+- conda: https://conda.anaconda.org/conda-forge/linux-64/harfbuzz-14.2.1-ha770c72_1.conda
+  sha256: 853beec89ff91cbbf630f1d305b69153eb28a3cb78af95ddc1fb4d30e524c6f4
+  md5: 72e956a71241633d8c80aa198fd08784
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-  - libgcc >=14
-  - libglib >=2.88.1,<3.0a0
-  - libstdcxx >=14
-  - libzlib >=1.3.2,<2.0a0
+  - libharfbuzz-devel 14.2.1 h17a8019_1
   license: MIT
   license_family: MIT
   run_exports:
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-  size: 2362258
-  timestamp: 1780450503234
+    - libharfbuzz >=14.2.1
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-  md5: 09dcf62e607cbec53fcd1ed7522924a8
+- conda: https://conda.anaconda.org/conda-forge/linux-64/inflate64-1.0.4-py312h4c3975b_1.conda
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   - python_abi 3.12.* *_cp312
   license: LGPL-2.1-or-later
   run_exports: {}
-  size: 41559
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.21.0-hcf29cc6_0.conda
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-  md5: dcd79cabd5d435f48d75db3d81cb5874
+- conda: https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.21.0-hcf29cc6_1.conda
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-  size: 479582
-  timestamp: 1782296544301
+  size: 478914
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 - conda: https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.25-h17f619e_0.conda
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   - libiconv >=1.18,<2.0a0
   - libjpeg-turbo >=3.1.2,<4.0a0
-  - libjxl >=0.11,<1.0a0
+  - libjxl >=0.11,<0.12.0a0
   - libkml >=1.3.0,<1.4.0a0
   - liblzma >=5.8.2,<6.0a0
   - libpng >=1.6.55,<1.7.0a0
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/libglib-2.88.1-h0d30a3d_2.conda
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-  md5: 17d484ab9c8179c6a6e5b7dbb5065afc
+- conda: https://conda.anaconda.org/conda-forge/linux-64/libglib-2.88.2-h0d30a3d_0.conda
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   - libgcc >=14
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-  - libzlib >=1.3.2,<2.0a0
-  - libiconv >=1.18,<2.0a0
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   run_exports:
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-  size: 4754097
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+    - libglib >=2.88.2,<3.0a0
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 - conda: https://conda.anaconda.org/conda-forge/linux-64/libglu-9.0.3-h5888daf_1.conda
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@@ -14592,6 +14242,50 @@ packages:
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   size: 8349777
   timestamp: 1761058442526
+- conda: https://conda.anaconda.org/conda-forge/linux-64/libharfbuzz-14.2.1-h17a8019_1.conda
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+  - libpng >=1.6.58,<1.7.0a0
+  - libstdcxx >=14
+  - libzlib >=1.3.2,<2.0a0
+  license: MIT
+  license_family: MIT
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+  size: 1297668
+  timestamp: 1782800580119
+- conda: https://conda.anaconda.org/conda-forge/linux-64/libharfbuzz-devel-14.2.1-h17a8019_1.conda
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+  md5: 99cf21100441e51272f1cd6fe0632a20
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+  - cairo >=1.18.4,<2.0a0
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+  - icu >=78.3,<79.0a0
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+  - libglib >=2.88.2,<3.0a0
+  - libharfbuzz 14.2.1 h17a8019_1
+  - libpng >=1.6.58,<1.7.0a0
+  - libstdcxx >=14
+  - libzlib >=1.3.2,<2.0a0
+  license: MIT
+  license_family: MIT
+  run_exports:
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 - conda: https://conda.anaconda.org/conda-forge/linux-64/libhwloc-2.13.0-default_he001693_1000.conda
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/libpq-18.4-hd5a49e9_0.conda
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-  md5: 2772b7ab7bc43f24e9585a714761a255
+- conda: https://conda.anaconda.org/conda-forge/linux-64/libpq-18.4-hd5a49e9_1.conda
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   - libgcc >=14
   - openldap >=2.6.13,<2.7.0a0
-  - openssl >=3.5.6,<4.0a0
+  - openssl >=3.5.7,<4.0a0
   license: PostgreSQL
   run_exports:
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-  size: 2754709
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 - conda: https://conda.anaconda.org/conda-forge/linux-64/libprotobuf-6.31.1-hfb7daa7_5.conda
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/libraqm-0.10.5-h75b3fb1_0.conda
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-  - fribidi >=1.0.16,<2.0a0
-  - harfbuzz >=14.2.1
+  - libgcc >=14
+  - libharfbuzz >=14.2.1
   - libfreetype >=2.14.3
   - libfreetype6 >=2.14.3
+  - fribidi >=1.0.16,<2.0a0
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   license_family: MIT
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-  size: 29594
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.53.2-h0c1763c_0.conda
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-  md5: 062b0ac602fb0adf250e3dfa86f221c4
+- conda: https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.53.3-h0c1763c_0.conda
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+  md5: 4aed8e657e9ff156bdbe849b4df44389
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   license: blessing
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-  size: 957849
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+    - libsqlite >=3.53.3,<4.0a0
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/matplotlib-3.11.0-py312h7900ff3_0.conda
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-  md5: 9ad541e75ff51cb70105c67324e418fe
+- conda: https://conda.anaconda.org/conda-forge/linux-64/matplotlib-3.11.0-py312h7900ff3_1.conda
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-  md5: 2ac1a55537207defa67c09b77de77564
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-  - libjxl >=0.11,<1.0a0
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   - libiconv >=1.18,<2.0a0
   - libzlib >=1.3.2,<2.0a0
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+  - libpng >=1.6.58,<1.7.0a0
+  - libzlib >=1.3.2,<2.0a0
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-  - harfbuzz >=14.2.1
-  - fribidi >=1.0.16,<2.0a0
+  - libharfbuzz >=14.2.1
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+- conda: https://conda.anaconda.org/conda-forge/osx-64/libsqlite-3.53.3-h8f8c405_0.conda
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+    - libsqlite >=3.53.3,<4.0a0
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-  - numpy >=1.23,<3
+  - numpy >=1.25,<3
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-  - numpy >=1.23,<3
+  - numpy >=1.25,<3
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-  - __osx >=11.0
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   license: MIT
   license_family: MIT
   run_exports: {}
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-  - python 3.14.* *_cp314
-  - __osx >=11.0
   - libcxx >=19
+  - __osx >=11.0
+  - python 3.14.* *_cp314
   - python_abi 3.14.* *_cp314
   license: MIT
   license_family: MIT
   run_exports: {}
-  size: 263816
-  timestamp: 1781762277927
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-  md5: 389b1c7cb4738fa74f8a142336807a13
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-  - libfreetype6 >=2.14.3
-  - libglib >=2.88.1,<3.0a0
-  - libzlib >=1.3.2,<2.0a0
+  - libharfbuzz-devel 14.2.1 h5a65909_1
   license: MIT
   license_family: MIT
   run_exports:
     weak:
-    - harfbuzz >=14.2.1
-  size: 1721040
-  timestamp: 1780451752518
+    - libharfbuzz >=14.2.1
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-  license: MIT
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/inflate64-1.0.4-py313h6535dbc_0.conda
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-  md5: cf73f1444a351ed90bbf4b61bf925059
+- conda: https://conda.anaconda.org/conda-forge/osx-arm64/inflate64-1.0.4-py313h0997733_1.conda
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+  md5: ee33ced5914f2b7ee8aa63a12da94d1c
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   - python >=3.13,<3.14.0a0
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   - python_abi 3.13.* *_cp313
   license: LGPL-2.1-or-later
   run_exports: {}
-  size: 40085
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   timestamp: 1633683992603
-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libcurl-8.21.0-hd5a2499_0.conda
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-  md5: 862eb5c81e1295f492fa261a68a4233f
+- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libcurl-8.21.0-hd5a2499_1.conda
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-  size: 410874
-  timestamp: 1782297872451
+  size: 410285
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 - conda: https://conda.anaconda.org/conda-forge/osx-arm64/libcxx-22.1.8-h55c6f16_0.conda
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   - libiconv >=1.18,<2.0a0
   - libjpeg-turbo >=3.1.2,<4.0a0
-  - libjxl >=0.11,<1.0a0
+  - libjxl >=0.11,<0.12.0a0
   - libkml >=1.3.0,<1.4.0a0
   - liblzma >=5.8.2,<6.0a0
   - libpng >=1.6.55,<1.7.0a0
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   size: 3661135
   timestamp: 1754315631978
-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libglib-2.88.1-ha08bb59_2.conda
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-  md5: 62d6f3b832d7d79ae0c0aa1bb3c325fa
+- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libglib-2.88.2-ha08bb59_0.conda
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+  md5: 03123cafdc96cef79fc8a615f9119b79
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-  - libffi >=3.5.2,<3.6.0a0
   - pcre2 >=10.47,<10.48.0a0
   - libiconv >=1.18,<2.0a0
+  - libintl >=0.25.1,<1.0a0
   - libzlib >=1.3.2,<2.0a0
+  - libffi >=3.5.2,<3.6.0a0
   constrains:
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   license: LGPL-2.1-or-later
   run_exports:
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-  size: 4439458
-  timestamp: 1778508895255
+    - libglib >=2.88.2,<3.0a0
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 - conda: https://conda.anaconda.org/conda-forge/osx-arm64/libgoogle-cloud-2.39.0-head0a95_0.conda
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@@ -34697,6 +34124,48 @@ packages:
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   size: 5377798
   timestamp: 1761053602943
+- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libharfbuzz-14.2.1-h5a65909_1.conda
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+  - libcxx >=19
+  - libfreetype >=2.14.3
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+  - libglib >=2.88.2,<3.0a0
+  - libpng >=1.6.58,<1.7.0a0
+  - libzlib >=1.3.2,<2.0a0
+  license: MIT
+  license_family: MIT
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+- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libharfbuzz-devel-14.2.1-h5a65909_1.conda
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+  - freetype
+  - graphite2 >=1.3.15,<2.0a0
+  - icu >=78.3,<79.0a0
+  - libcxx >=19
+  - libfreetype >=2.14.3
+  - libfreetype6 >=2.14.3
+  - libglib >=2.88.2,<3.0a0
+  - libharfbuzz 14.2.1 h5a65909_1
+  - libpng >=1.6.58,<1.7.0a0
+  - libzlib >=1.3.2,<2.0a0
+  license: MIT
+  license_family: MIT
+  run_exports:
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+    - libharfbuzz >=14.2.1
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 - conda: https://conda.anaconda.org/conda-forge/osx-arm64/libhwloc-2.13.0-default_ha97f43a_1000.conda
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libraqm-0.10.5-h29bd36a_0.conda
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-  md5: 4c7999b62691f4ed6e0650832b7b6cff
+- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libraqm-0.10.5-h45af499_1.conda
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-  - fribidi >=1.0.16,<2.0a0
-  - harfbuzz >=14.2.1
+  - libharfbuzz >=14.2.1
   - libfreetype >=2.14.3
   - libfreetype6 >=2.14.3
+  - fribidi >=1.0.16,<2.0a0
   license: MIT
   license_family: MIT
   run_exports:
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-  size: 27339
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 - conda: https://conda.anaconda.org/conda-forge/osx-arm64/libre2-11-2025.11.05-h91c62da_0.conda
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@@ -35210,31 +34679,18 @@ packages:
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libsqlite-3.53.2-h1ae2325_0.conda
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-  md5: 1ebde5c677f00765233a17e278571177
+- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libsqlite-3.53.3-h1b79a29_0.conda
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-  - icu >=78.3,<79.0a0
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   license: blessing
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libsqlite-3.53.2-h1b79a29_0.conda
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-  license: blessing
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+    - libsqlite >=3.53.3,<4.0a0
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/matplotlib-3.11.0-py313h39782a4_0.conda
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-  md5: 3a70aa61eb5027d798f5625802816e17
+- conda: https://conda.anaconda.org/conda-forge/osx-arm64/matplotlib-3.11.0-py313h39782a4_1.conda
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/matplotlib-3.11.0-py314he55896b_0.conda
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+- conda: https://conda.anaconda.org/conda-forge/osx-arm64/matplotlib-3.11.0-py314he55896b_1.conda
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-  size: 14902
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/matplotlib-base-3.11.0-py313h113b65d_0.conda
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-  md5: f1d55a18c56bdffeb3978c663717f1bf
+- conda: https://conda.anaconda.org/conda-forge/osx-arm64/matplotlib-base-3.11.0-py313ha8b9ad1_1.conda
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   - numpy >=1.23
-  - numpy >=1.23,<3
+  - numpy >=1.25,<3
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/matplotlib-base-3.11.0-py314ha5eae4c_0.conda
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+- conda: https://conda.anaconda.org/conda-forge/osx-arm64/matplotlib-base-3.11.0-py314hf6804ef_1.conda
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-  - numpy >=1.23,<3
+  - numpy >=1.25,<3
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-  size: 8831714
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/yarl-1.24.2-py313h65a2061_0.conda
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-  - python >=3.13,<3.14.0a0 *_cp313
-  - python_abi 3.13.* *_cp313
-  license: Apache-2.0
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-- conda: https://conda.anaconda.org/conda-forge/win-64/c-blosc2-3.1.4-h2af8807_0.conda
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-  md5: c36ed9aa63449039a94d942e63ab4381
+- conda: https://conda.anaconda.org/conda-forge/win-64/c-blosc2-3.1.5-h2af8807_0.conda
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     weak:
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-  size: 254422
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+    - c-blosc2 >=3.1.5,<3.2.0a0
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@@ -40087,6 +39361,39 @@ packages:
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   size: 123456704
   timestamp: 1780737175469
+- conda: https://conda.anaconda.org/conda-forge/win-64/glib-2.88.2-h395db07_0.conda
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+  - packaging
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+  - glib-tools ==2.88.2 h74ecf4c_0
+  - libintl-devel
+  - vc >=14.3,<15
+  - vc14_runtime >=14.44.35208
+  - ucrt >=10.0.20348.0
+  - libintl >=0.22.5,<1.0a0
+  license: LGPL-2.1-or-later
+  run_exports:
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+    - libglib >=2.88.2,<3.0a0
+  size: 75973
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+- conda: https://conda.anaconda.org/conda-forge/win-64/glib-tools-2.88.2-h74ecf4c_0.conda
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+  - libffi
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+  - ucrt >=10.0.20348.0
+  - libintl >=0.22.5,<1.0a0
+  license: LGPL-2.1-or-later
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 - conda: https://conda.anaconda.org/conda-forge/win-64/glpk-5.0-h8ffe710_0.tar.bz2
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-- conda: https://conda.anaconda.org/conda-forge/win-64/greenlet-3.5.2-py313h927ade5_0.conda
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-- conda: https://conda.anaconda.org/conda-forge/win-64/greenlet-3.5.2-py314hb98de8c_0.conda
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+  md5: 5a81d686e0ae1e9eff5081ea846b7cb4
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   license_family: MIT
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-  size: 248927
-  timestamp: 1781762180310
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 - conda: https://conda.anaconda.org/conda-forge/win-64/grpcio-1.73.1-py313h3c83859_1.conda
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-- conda: https://conda.anaconda.org/conda-forge/win-64/harfbuzz-14.2.1-h5a1b470_0.conda
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-  md5: 0bcbb7f911590beec914555c6b82050d
+- conda: https://conda.anaconda.org/conda-forge/win-64/harfbuzz-14.2.1-h57928b3_1.conda
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-  - ucrt >=10.0.20348.0
-  - vc >=14.2,<15
-  - vc14_runtime >=14.29.30139
+  - libharfbuzz-devel 14.2.1 h03b5201_1
   license: MIT
   license_family: MIT
   run_exports:
     weak:
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-  size: 1304897
-  timestamp: 1780450940279
+    - libharfbuzz >=14.2.1
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-- conda: https://conda.anaconda.org/conda-forge/win-64/highspy-1.13.1-np2py313h776c0ec_0.conda
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+- conda: https://conda.anaconda.org/conda-forge/win-64/highspy-1.14.0-np2py312ha76dc74_0.conda
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   - ucrt >=10.0.20348.0
-  - python_abi 3.13.* *_cp313
+  - python_abi 3.12.* *_cp312
   license: MIT
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   - ucrt >=10.0.20348.0
-  - python_abi 3.12.* *_cp312
+  - python_abi 3.13.* *_cp313
   license: MIT
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-  timestamp: 1775498320998
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+- conda: https://conda.anaconda.org/conda-forge/win-64/inflate64-1.0.4-py313h5ea7bf4_1.conda
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   - vc14_runtime >=14.44.35208
   license: LGPL-2.1-or-later
   run_exports: {}
-  size: 41045
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-- conda: https://conda.anaconda.org/conda-forge/win-64/libcurl-8.21.0-h8206538_0.conda
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     weak:
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   - libjpeg-turbo >=3.1.2,<4.0a0
-  - libjxl >=0.11,<1.0a0
+  - libjxl >=0.11,<0.12.0a0
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+  - libintl >=0.22.5,<1.0a0
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+    - libglib >=2.88.2,<3.0a0
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+- conda: https://conda.anaconda.org/conda-forge/win-64/libharfbuzz-14.2.1-h03b5201_1.conda
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-  - harfbuzz >=14.2.1
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-  - numpy >=1.23,<3
+  - numpy >=1.25,<3
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-  - numpy >=1.23,<3
+  - numpy >=1.25,<3
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+  - python_abi 3.14.* *_cp314
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+    - numpy >=1.25,<3
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+  timestamp: 1775825719953
 - conda: https://conda.anaconda.org/conda-forge/win-64/yaml-0.2.5-h6a83c73_3.conda
   sha256: 80ee68c1e7683a35295232ea79bcc87279d31ffeda04a1665efdb43cbd50a309
   md5: 433699cba6602098ae8957a323da2664
@@ -45819,23 +45157,6 @@ packages:
   run_exports: {}
   size: 151702
   timestamp: 1779246206775
-- conda: https://conda.anaconda.org/conda-forge/win-64/yarl-1.24.2-py313hd650c13_0.conda
-  sha256: e3cd6601474e9a808233df49193f339f1484fd4b0259e29863301a38f33596af
-  md5: 66967bcbc121922df483e718df9f5825
-  depends:
-  - idna >=2.0
-  - multidict >=4.0
-  - propcache >=0.2.1
-  - python >=3.13,<3.14.0a0
-  - python_abi 3.13.* *_cp313
-  - ucrt >=10.0.20348.0
-  - vc >=14.3,<15
-  - vc14_runtime >=14.44.35208
-  license: Apache-2.0
-  license_family: Apache
-  run_exports: {}
-  size: 151505
-  timestamp: 1779246206706
 - conda: https://conda.anaconda.org/conda-forge/win-64/zeromq-4.3.5-h3a581c9_11.conda
   sha256: c3e279cb309b153152fcdd6ee6d039ad996d563c849f06be39d85b8e3351df25
   md5: f016c0c5f9c01549b259146614786192
diff --git a/pixi.toml b/pixi.toml
index ff177a298d..fa2a9cf933 100644
--- a/pixi.toml
+++ b/pixi.toml
@@ -73,7 +73,7 @@ highspy = ">=1.12.0"
 ipython = ">=9.7.0"
 jpype1 = ">=1.6.0"
 libgdal-netcdf = ">=3.10.3"
-linopy = ">=0.6.1,<0.7.0"  # remove <0.7.0 with pypsa >= 1.2.2
+linopy = ">=0.6.1"
 lxml = ">=6.0.2"
 matplotlib = ">=3.10.7"
 memory_profiler = ">=0.61.0"

From 0a35079040b4ad3a8f10609a95d705bf91b95b71 Mon Sep 17 00:00:00 2001
From: tgilon <22521851+tgilon@users.noreply.github.com>
Date: Wed, 8 Jul 2026 09:36:23 +0000
Subject: [PATCH 21/22] [github-actions.ci] Update locked envs

---
 pixi.lock | 51 +++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 51 insertions(+)

diff --git a/pixi.lock b/pixi.lock
index 85a3cfd928..b96a3f5948 100644
--- a/pixi.lock
+++ b/pixi.lock
@@ -10145,6 +10145,9 @@ packages:
   - snakemake-interface-executor-plugins >=9.0.0,<10.0.0
   license: MIT
   license_family: MIT
+  run_exports:
+    weak:
+    - snakemake-executor-plugin-cluster-generic >=1.0.9,<2.0a0
   size: 13919
   timestamp: 1710194099964
 - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-executor-plugin-slurm-2.7.1-pyhdfd78af_0.conda
@@ -10161,6 +10164,9 @@ packages:
   - throttler >=1.2.2,<2.0.0
   license: MIT
   license_family: MIT
+  run_exports:
+    weak:
+    - snakemake-executor-plugin-slurm >=2.7.1,<3.0a0
   size: 47320
   timestamp: 1780309106075
 - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-executor-plugin-slurm-jobstep-0.4.0-pyhdfd78af_0.conda
@@ -10171,6 +10177,9 @@ packages:
   - snakemake-interface-common >=1.13.0,<2.0.0
   - snakemake-interface-executor-plugins >=9.0.0,<10.0.0
   license: MIT
+  run_exports:
+    weak:
+    - snakemake-executor-plugin-slurm-jobstep >=0.4.0,<1.0a0
   size: 14678
   timestamp: 1765807808315
 - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-interface-common-1.23.0-pyhdfd78af_1.conda
@@ -10183,6 +10192,9 @@ packages:
   - python >=3.8
   license: MIT
   license_family: MIT
+  run_exports:
+    weak:
+    - snakemake-interface-common >=1.23.0,<2.0a0
   size: 22751
   timestamp: 1780096495612
 - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-interface-executor-plugins-9.4.0-pyh84498cf_0.conda
@@ -10195,6 +10207,9 @@ packages:
   - throttler >=1.2.2,<2.0.0
   license: MIT
   license_family: MIT
+  run_exports:
+    weak:
+    - snakemake-interface-executor-plugins >=9.4.0,<10.0a0
   size: 25394
   timestamp: 1772990565157
 - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-interface-logger-plugins-2.1.0-pyhdfd78af_0.conda
@@ -10204,6 +10219,9 @@ packages:
   - python >=3.11.0,<4.0.0
   - snakemake-interface-common >=1.17.4,<2.0.0
   license: MIT
+  run_exports:
+    weak:
+    - snakemake-interface-logger-plugins >=2.1.0,<3.0a0
   size: 21021
   timestamp: 1779291141116
 - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-interface-report-plugins-1.3.0-pyhd4c3c12_0.conda
@@ -10213,6 +10231,9 @@ packages:
   - python >=3.11.0,<4.0.0
   - snakemake-interface-common >=1.16.0,<2.0.0
   license: MIT
+  run_exports:
+    weak:
+    - snakemake-interface-report-plugins >=1.3.0,<2.0a0
   size: 14490
   timestamp: 1761910544502
 - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-interface-scheduler-plugins-2.0.2-pyhd4c3c12_0.conda
@@ -10222,6 +10243,9 @@ packages:
   - python >=3.11.0,<4.0.0
   - snakemake-interface-common >=1.20.1,<2.0.0
   license: MIT
+  run_exports:
+    weak:
+    - snakemake-interface-scheduler-plugins >=2.0.2,<3.0a0
   size: 16446
   timestamp: 1760984180933
 - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-interface-storage-plugins-4.4.0-pyh84498cf_0.conda
@@ -10235,6 +10259,9 @@ packages:
   - wrapt >=1.15.0,<2.0.0
   license: MIT
   license_family: MIT
+  run_exports:
+    weak:
+    - snakemake-interface-storage-plugins >=4.4.0,<5.0a0
   size: 22621
   timestamp: 1773652683248
 - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-interface-storage-plugins-4.4.1-pyh84498cf_0.conda
@@ -10249,6 +10276,9 @@ packages:
   - wrapt >=1.15.0,<2.0.0
   license: MIT
   license_family: MIT
+  run_exports:
+    weak:
+    - snakemake-interface-storage-plugins >=4.4.1,<5.0a0
   size: 22783
   timestamp: 1773699846635
 - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-logger-plugin-pypsa-0.2.0-pyhdfd78af_0.conda
@@ -10258,6 +10288,9 @@ packages:
   - python >=3.11
   - snakemake-interface-logger-plugins >=2,<3
   license: MIT
+  run_exports:
+    weak:
+    - snakemake-logger-plugin-pypsa >=0.2.0,<0.3.0a0
   size: 21702
   timestamp: 1773888550966
 - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-logger-plugin-snkmt-0.1.6-pyhdfd78af_0.conda
@@ -10270,6 +10303,9 @@ packages:
   - sqlalchemy >=2.0.38,<3.0.0
   license: MIT
   license_family: MIT
+  run_exports:
+    weak:
+    - snakemake-logger-plugin-snkmt >=0.1.6,<1.0a0
   size: 17232
   timestamp: 1767824224092
 - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-minimal-9.16.3-pyhdfd78af_1.conda
@@ -10309,6 +10345,9 @@ packages:
   - referencing
   license: MIT
   license_family: MIT
+  run_exports:
+    weak:
+    - snakemake-minimal >=9.16.3,<10.0a0
   size: 874994
   timestamp: 1773485408741
 - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-minimal-9.23.1-pyhdfd78af_1.conda
@@ -10349,6 +10388,9 @@ packages:
   - yte >=1.5.5,<2.0
   license: MIT
   license_family: MIT
+  run_exports:
+    weak:
+    - snakemake-minimal >=9.23.1,<10.0a0
   size: 888303
   timestamp: 1781821379807
 - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-storage-plugin-cached-http-0.3-pyhdfd78af_0.conda
@@ -10366,6 +10408,9 @@ packages:
   - typing_extensions >=4.15,<5.dev0
   - zstandard >=0.25.0,<0.26.0
   license: MIT
+  run_exports:
+    weak:
+    - snakemake-storage-plugin-cached-http >=0.3,<0.4.0a0
   size: 21008
   timestamp: 1770697322502
 - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-storage-plugin-http-0.3.1-pyhdfd78af_0.conda
@@ -10380,6 +10425,9 @@ packages:
   - snakemake-interface-storage-plugins >=4.1.0,<5.0.0
   license: MIT
   license_family: MIT
+  run_exports:
+    weak:
+    - snakemake-storage-plugin-http >=0.3.1,<0.4.0a0
   size: 15256
   timestamp: 1774034096454
 - conda: https://conda.anaconda.org/bioconda/noarch/snkmt-0.4.0-pyhdfd78af_0.conda
@@ -10397,6 +10445,9 @@ packages:
   - typer >=0.15.3
   license: MIT
   license_family: MIT
+  run_exports:
+    weak:
+    - snkmt >=0.4.0,<1.0a0
   size: 44250
   timestamp: 1773415752189
 - conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-20_gnu.conda

From 2c73f62466d32920ab90a8484cf720fbf9ea43ae Mon Sep 17 00:00:00 2001
From: tgilon <22521851+tgilon@users.noreply.github.com>
Date: Fri, 10 Jul 2026 08:14:06 +0000
Subject: [PATCH 22/22] [github-actions.ci] Update locked envs

---
 envs/default_linux-64.pin.txt  |   8 +-
 envs/default_osx-64.pin.txt    |   8 +-
 envs/default_osx-arm64.pin.txt |   8 +-
 envs/default_win-64.pin.txt    |   8 +-
 pixi.lock                      | 277 +++++++++++++++++++--------------
 5 files changed, 180 insertions(+), 129 deletions(-)

diff --git a/envs/default_linux-64.pin.txt b/envs/default_linux-64.pin.txt
index c752873c56..38bacd3e98 100644
--- a/envs/default_linux-64.pin.txt
+++ b/envs/default_linux-64.pin.txt
@@ -50,7 +50,7 @@ https://conda.anaconda.org/conda-forge/noarch/tsam-3.4.1-pyhc364b38_0.conda#c0cf
 https://conda.anaconda.org/conda-forge/noarch/pycparser-3.0-pyhcf101f3_0.conda#9c5491066224083c41b6d5635ed7107b
 https://conda.anaconda.org/conda-forge/linux-64/cffi-2.0.0-py314h4a8dc5f_1.conda#cf45f4278afd6f4e6d03eda0f435d527
 https://conda.anaconda.org/conda-forge/linux-64/zstandard-0.25.0-py314h0f05182_1.conda#2930a6e1c7b3bc5f66172e324a8f5fc3
-https://conda.anaconda.org/conda-forge/noarch/typing_extensions-4.15.0-pyhcf101f3_0.conda#0caa1af407ecff61170c9437a808404d
+https://conda.anaconda.org/conda-forge/noarch/typing_extensions-4.16.0-pyhcf101f3_0.conda#c70ad746c22219b9700931707482992c
 https://conda.anaconda.org/conda-forge/noarch/tqdm-loggable-0.4.1-pyhd8ed1ab_0.conda#e38b732ce8d5f44d06386a9f600c7d0d
 https://conda.anaconda.org/conda-forge/linux-64/wrapt-1.17.3-py314h5bd0f2a_1.conda#82da729c870ada2f675689a39b4f697f
 https://conda.anaconda.org/conda-forge/noarch/throttler-1.2.2-pyhd8ed1ab_0.conda#6fc48bef3b400c82abaee323a9d4e290
@@ -92,7 +92,7 @@ https://conda.anaconda.org/conda-forge/linux-64/pyyaml-6.0.3-py314h67df5f8_1.con
 https://conda.anaconda.org/conda-forge/noarch/dpath-2.2.0-pyha770c72_1.conda#7b2af124684a994217e62c641bca2e48
 https://conda.anaconda.org/conda-forge/noarch/yte-1.9.4-pyhd8ed1ab_0.conda#89d5edf5d52d3bc1ed4d7d3feef508ba
 https://conda.anaconda.org/conda-forge/noarch/tabulate-0.10.0-pyhcf101f3_0.conda#3b887b7b3468b0f494b4fad40178b043
-https://conda.anaconda.org/conda-forge/noarch/typing-extensions-4.15.0-h396c80c_0.conda#edd329d7d3a4ab45dcf905899a7a6115
+https://conda.anaconda.org/conda-forge/noarch/typing-extensions-4.16.0-h69aa097_0.conda#c680b5747e8c4c8f23dca0bb7042a8fc
 https://conda.anaconda.org/conda-forge/linux-64/greenlet-3.5.3-py314h42812f9_0.conda#82a0491c0457c046b0da5d34cdd617cd
 https://conda.anaconda.org/conda-forge/linux-64/sqlalchemy-2.0.51-py314h0f05182_0.conda#aeb7447f3ea37b2bb32167267dcf0bfe
 https://conda.anaconda.org/conda-forge/noarch/typing-inspection-0.4.2-pyhcf101f3_2.conda#53f5409c5cfd6c5a66417d68e3f0a864
@@ -296,7 +296,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libaec-1.1.5-h088129d_0.conda#86
 https://conda.anaconda.org/conda-forge/linux-64/hdf5-1.14.6-nompi_h19486de_110.conda#9c6e11a83468e1d5decae516077a73fb
 https://conda.anaconda.org/conda-forge/linux-64/c-blosc2-3.1.5-hc31b594_0.conda#76ea4a0e8f1600f89cbb2d3d62ac2b04
 https://conda.anaconda.org/conda-forge/linux-64/pytables-3.11.1-py314h5611b9a_3.conda#5e417edb9951b60d96f8d9b2d1e025be
-https://conda.anaconda.org/conda-forge/noarch/pydeck-0.9.2-pyhd8ed1ab_0.conda#18301be1ab749bc57ae189377836cc47
+https://conda.anaconda.org/conda-forge/noarch/pydeck-0.9.3-pyhd8ed1ab_0.conda#7c94c948b32d681345f134ae11892fee
 https://conda.anaconda.org/conda-forge/linux-64/libzip-1.11.2-h6991a6a_0.conda#a7b27c075c9b7f459f1c022090697cba
 https://conda.anaconda.org/conda-forge/linux-64/hdf4-4.2.15-h2a13503_7.conda#bd77f8da987968ec3927990495dc22e4
 https://conda.anaconda.org/conda-forge/linux-64/libattr-2.5.2-hb03c661_1.conda#7e7f0a692eb62b95d3010563e7f963b6
@@ -390,7 +390,7 @@ https://conda.anaconda.org/conda-forge/noarch/pandera-0.32.1-ha00cc4c_0.conda#f6
 https://conda.anaconda.org/conda-forge/noarch/et_xmlfile-2.0.0-pyhd8ed1ab_1.conda#71bf9646cbfabf3022c8da4b6b4da737
 https://conda.anaconda.org/conda-forge/linux-64/openpyxl-3.1.5-py314hf3b76af_3.conda#bc90b1901f01e0772c74e24b6f931137
 https://conda.anaconda.org/conda-forge/linux-64/inflate64-1.0.4-py314h5bd0f2a_2.conda#7fde62dd2e4133af7aa951fd05e5c4dd
-https://conda.anaconda.org/conda-forge/noarch/filelock-3.29.4-pyhd8ed1ab_0.conda#66f138d7a6dffb5c959cc4bf6dc2b797
+https://conda.anaconda.org/conda-forge/noarch/filelock-3.29.5-pyhd8ed1ab_0.conda#288126f559a8a6cacabe59c73327fe1f
 https://conda.anaconda.org/conda-forge/noarch/oda-reader-1.6.0-pyhc364b38_0.conda#0c5f9ee81f0fac33b7fac8c7591913e6
 https://conda.anaconda.org/conda-forge/noarch/chardet-7.4.3-pyhcf101f3_0.conda#7dd72a4c857cd652a1e23c13099a15d2
 https://conda.anaconda.org/conda-forge/noarch/soupsieve-2.8.4-pyhd8ed1ab_0.conda#9e21f087f087f805debe877d88e00a14
diff --git a/envs/default_osx-64.pin.txt b/envs/default_osx-64.pin.txt
index f54354df89..d2bc1bf60c 100644
--- a/envs/default_osx-64.pin.txt
+++ b/envs/default_osx-64.pin.txt
@@ -50,7 +50,7 @@ https://conda.anaconda.org/conda-forge/noarch/tsam-3.4.1-pyhc364b38_0.conda#c0cf
 https://conda.anaconda.org/conda-forge/noarch/pycparser-3.0-pyhcf101f3_0.conda#9c5491066224083c41b6d5635ed7107b
 https://conda.anaconda.org/conda-forge/osx-64/cffi-2.0.0-py314h8ca4d5a_1.conda#71c2caaa13f50fe0ebad0f961aee8073
 https://conda.anaconda.org/conda-forge/osx-64/zstandard-0.25.0-py314hd1e8ddb_1.conda#b94712955dc017da312e6f6b4c6d4866
-https://conda.anaconda.org/conda-forge/noarch/typing_extensions-4.15.0-pyhcf101f3_0.conda#0caa1af407ecff61170c9437a808404d
+https://conda.anaconda.org/conda-forge/noarch/typing_extensions-4.16.0-pyhcf101f3_0.conda#c70ad746c22219b9700931707482992c
 https://conda.anaconda.org/conda-forge/noarch/tqdm-loggable-0.4.1-pyhd8ed1ab_0.conda#e38b732ce8d5f44d06386a9f600c7d0d
 https://conda.anaconda.org/conda-forge/osx-64/wrapt-1.17.3-py314h03d016b_1.conda#eddd65903cdc82babc86d48aba49acae
 https://conda.anaconda.org/conda-forge/noarch/throttler-1.2.2-pyhd8ed1ab_0.conda#6fc48bef3b400c82abaee323a9d4e290
@@ -92,7 +92,7 @@ https://conda.anaconda.org/conda-forge/osx-64/pyyaml-6.0.3-py314h10d0514_1.conda
 https://conda.anaconda.org/conda-forge/noarch/dpath-2.2.0-pyha770c72_1.conda#7b2af124684a994217e62c641bca2e48
 https://conda.anaconda.org/conda-forge/noarch/yte-1.9.4-pyhd8ed1ab_0.conda#89d5edf5d52d3bc1ed4d7d3feef508ba
 https://conda.anaconda.org/conda-forge/noarch/tabulate-0.10.0-pyhcf101f3_0.conda#3b887b7b3468b0f494b4fad40178b043
-https://conda.anaconda.org/conda-forge/noarch/typing-extensions-4.15.0-h396c80c_0.conda#edd329d7d3a4ab45dcf905899a7a6115
+https://conda.anaconda.org/conda-forge/noarch/typing-extensions-4.16.0-h69aa097_0.conda#c680b5747e8c4c8f23dca0bb7042a8fc
 https://conda.anaconda.org/conda-forge/osx-64/greenlet-3.5.3-py314h2883b87_0.conda#672ee449cf4040819aaf51222c251242
 https://conda.anaconda.org/conda-forge/osx-64/sqlalchemy-2.0.51-py314h0b69929_0.conda#2ae2aeb0975ffa44ea6f6251f5532897
 https://conda.anaconda.org/conda-forge/noarch/typing-inspection-0.4.2-pyhcf101f3_2.conda#53f5409c5cfd6c5a66417d68e3f0a864
@@ -285,7 +285,7 @@ https://conda.anaconda.org/conda-forge/osx-64/libaec-1.1.5-he7c3a48_0.conda#975f
 https://conda.anaconda.org/conda-forge/osx-64/hdf5-1.14.6-nompi_h13accda_110.conda#8fa7c7e9a3c1b57a37bc03f0183aaf17
 https://conda.anaconda.org/conda-forge/osx-64/c-blosc2-3.1.5-h32e32c0_0.conda#2612aa76eb4a2846336b409ff52da741
 https://conda.anaconda.org/conda-forge/osx-64/pytables-3.11.1-py314hd3b5d2a_3.conda#9c687523f836bc16357bba75574ecefc
-https://conda.anaconda.org/conda-forge/noarch/pydeck-0.9.2-pyhd8ed1ab_0.conda#18301be1ab749bc57ae189377836cc47
+https://conda.anaconda.org/conda-forge/noarch/pydeck-0.9.3-pyhd8ed1ab_0.conda#7c94c948b32d681345f134ae11892fee
 https://conda.anaconda.org/conda-forge/osx-64/libzip-1.11.2-h31df5bb_0.conda#3cf12c97a18312c9243a895580bf5be6
 https://conda.anaconda.org/conda-forge/osx-64/hdf4-4.2.15-h8138101_7.conda#7ce543bf38dbfae0de9af112ee178af2
 https://conda.anaconda.org/conda-forge/osx-64/libnetcdf-4.9.3-nompi_h29b767a_104.conda#6515420f8cc50150e846b779ad1b3f8b
@@ -376,7 +376,7 @@ https://conda.anaconda.org/conda-forge/noarch/pandera-0.32.1-ha00cc4c_0.conda#f6
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diff --git a/envs/default_osx-arm64.pin.txt b/envs/default_osx-arm64.pin.txt
index beb44c3a78..2ec6da809d 100644
--- a/envs/default_osx-arm64.pin.txt
+++ b/envs/default_osx-arm64.pin.txt
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 https://conda.anaconda.org/conda-forge/noarch/tqdm-loggable-0.4.1-pyhd8ed1ab_0.conda#e38b732ce8d5f44d06386a9f600c7d0d
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 https://conda.anaconda.org/conda-forge/osx-arm64/greenlet-3.5.3-py314he609de1_0.conda#26f3dd379df3a3b29a1f1906bc7f0794
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@@ -285,7 +285,7 @@ https://conda.anaconda.org/conda-forge/osx-arm64/libaec-1.1.5-h8664d51_0.conda#1
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diff --git a/envs/default_win-64.pin.txt b/envs/default_win-64.pin.txt
index 3c7d02e221..ce9ca5d5fd 100644
--- a/envs/default_win-64.pin.txt
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diff --git a/pixi.lock b/pixi.lock
index 60675bd60a..77344fbd12 100644
--- a/pixi.lock
+++ b/pixi.lock
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@@ -468,7 +468,7 @@ environments:
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@@ -706,7 +706,7 @@ environments:
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@@ -10173,6 +10173,9 @@ packages:
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   license: MIT
   license_family: MIT
+  run_exports:
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@@ -10189,6 +10192,9 @@ packages:
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   license_family: MIT
+  run_exports:
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   license: MIT
+  run_exports:
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@@ -10211,6 +10220,9 @@ packages:
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   license: MIT
   license_family: MIT
+  run_exports:
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@@ -10223,6 +10235,9 @@ packages:
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   license_family: MIT
+  run_exports:
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   - snakemake-interface-common >=1.17.4,<2.0.0
   license: MIT
+  run_exports:
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+  run_exports:
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 - conda: https://conda.anaconda.org/bioconda/noarch/snkmt-0.4.0-pyhdfd78af_0.conda
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