issue: currently API returns smoothed & aggregated by default, but CLI does not.
proposal: CLI should smooth and aggregate across regions by default.
After addressing this issue, a release should follow, since this may change default pipeline outputs.
Notes:
- is
smooth_sigma=0.1 a reasonable default? @golobor has a favorite of 0.03.
cooltools/cooltools/cli/expected_cis.py
Line 46 in ba2be42
issue: currently API returns smoothed & aggregated by default, but CLI does not.
proposal: CLI should smooth and aggregate across regions by default.
After addressing this issue, a release should follow, since this may change default pipeline outputs.
Notes:
smooth_sigma=0.1a reasonable default? @golobor has a favorite of 0.03.