polychrom/pyproject.toml at master · open2c/polychrom · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
[build-system]
requires = ["setuptools>=45", "wheel", "cython>=0.29", "numpy>=1.9"]
build-backend = "setuptools.build_meta"

[project]
name = "polychrom"
version = "0.1.1"
description = "A library for polymer simulations and their analyses."
readme = "README.md"
requires-python = ">=3.10"
license = "MIT"
authors = [
    {name = "Mirny Lab", email = "espresso@mit.edu"}
]
keywords = ["genomics", "polymer", "Hi-C", "molecular dynamics", "chromosomes"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
]

dependencies = [
    "cython>=0.29",
    "numpy>=1.9",
    "scipy>=0.16",
    "h5py>=2.5",
    "pandas>=0.19",
]

[project.optional-dependencies]
dev = [
    "pytest",
    "black",
    "isort",
]

[project.urls]
Homepage = "https://github.com/open2c/polychrom"
Repository = "https://github.com/open2c/polychrom"

[project.scripts]
polychrom = "polychrom.cli:cli"

[tool.setuptools.packages.find]
include = ["polychrom*"]
exclude = ["utilities*", "build*", "docs*", "examples*"]

[tool.black]
line-length = 120

[tool.isort]
profile = "black"