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lzehllzehl
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Merge pull request #579 from Alixbonard/dev-neuroimaging
comment: instructions could be further optimized and updated in a different PR
2 parents 7e9e17b + edc838d commit cb21783

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‎schemas/data/rasterImage.schema.tpl.json‎

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{
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"_type": "core:RasterImage",
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"required": [
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"coordinateFramework",
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"dataLocation",
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"dimension",
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"pixelSize"
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],
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"properties": {
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"additionalRemarks": {
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"_instruction": "Enter any additional remarks concerning this digital representation.",
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"type": "string"
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},
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"capturedWith": {
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"_instruction": "Add the device used to capture this digital representation.",
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"_linkedCategories": [
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"deviceUsage"
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]
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},
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"coordinateFramework": {
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"_instruction": "Add the coordinate space in which this digital representation exists.",
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"_linkedTypes": [
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"sands:CommonCoordinateFrameworkVersion",
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"sands:CustomCoordinateFramework"
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]
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},
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"dataLocation": {
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"_instruction": "Add the location of the file or file bundle in which the digital representation is stored.",
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"_linkedTypes": [
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"core:File"
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]
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},
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"dimension": {
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"_instruction": "Enter the dimension of this image in pixels.",
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"items": {
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"type": "integer"
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},
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"maxItems": 2,
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"minItems": 2,
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"type": "array"
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},
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"name": {
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"_instruction": "Enter a descriptive name of this digital representation preferably matching the filename.",
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"type": "string"
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},
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"pixelSize": {
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"_embeddedTypes": [
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"core:QuantitativeValue"
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],
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"_instruction": "Enter the physical pixel size for this image (in x,y order).",
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"maxItems": 2,
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"minItems": 2,
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"type": "array"
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}
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}
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}
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‎schemas/data/rasterImageSequence.shema.tpl.json‎

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{
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"_type": "core:RasterImageSequence",
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"required": [
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"coordinateFramework",
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"dataLocation",
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"dimension",
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"pixelSize",
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"temporalSamplingFrequency"
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],
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"properties": {
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"additionalRemarks": {
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"_instruction": "Enter any additional remarks concerning this digital representation.",
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"type": "string"
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},
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"capturedWith": {
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"_instruction": "Add the device used to capture this digital representation.",
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"_linkedCategories": [
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"deviceUsage"
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]
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},
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"coordinateFramework": {
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"_instruction": "Add the coordinate space in which this digital representation exists.",
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"_linkedTypes": [
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"sands:CommonCoordinateFrameworkVersion",
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"sands:CustomCoordinateFramework"
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]
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},
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"dataLocation": {
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"_instruction": "Add the location of the file or file bundle in which the digital representation is stored.",
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"_linkedTypes": [
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"core:File"
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]
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},
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"dimension": {
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"_instruction": "Enter the common dimension of the consecutive images (frames) in pixels.",
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"items": {
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"type": "integer"
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},
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"maxItems": 2,
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"minItems": 2,
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"type": "array"
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},
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"name": {
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"_instruction": "Enter a descriptive name of this digital representation preferably matching the filename.",
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"type": "string"
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},
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"numberOfImages": {
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"_instruction": "Enter the total number of images in this sequence (at least two).",
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"minimum": 2,
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"type": "integer"
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},
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"pixelSize": {
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"_embeddedTypes": [
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"core:QuantitativeValue"
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],
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"_instruction": "Enter the common physical pixel size for the consecutive images (frames) (in x,y order).",
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"maxItems": 2,
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"minItems": 2,
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"type": "array"
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},
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"temporalSamplingFrequency": {
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"_embeddedTypes": [
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"core:QuantitativeValue"
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],
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"_instruction": "Enter the rate at which consecutive images (frames) are captured in a sequence, preferably measured in Hertz (Hz)."
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}
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}
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}
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‎schemas/data/rasterImageStack.schema.tpl.json‎

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{
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"_type": "core:RasterImageStack",
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"required": [
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"coordinateFramework",
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"dataLocation",
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"dimension",
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"pixelSize",
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"z-stepSize"
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],
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"properties": {
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"additionalRemarks": {
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"_instruction": "Enter any additional remarks concerning this digital representation.",
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"type": "string"
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},
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"capturedWith": {
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"_instruction": "Add the device used to capture this digital representation.",
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"_linkedCategories": [
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"deviceUsage"
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]
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},
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"coordinateFramework": {
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"_instruction": "Add the coordinate space in which this digital representation exists.",
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"_linkedTypes": [
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"sands:CommonCoordinateFrameworkVersion",
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"sands:CustomCoordinateFramework"
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]
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},
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"dataLocation": {
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"_instruction": "Add the location of the file or file bundle in which the digital representation is stored.",
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"_linkedTypes": [
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"core:File"
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]
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},
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"dimension": {
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"_instruction": "Enter the common dimension of the consecutive image planes (optical sections) in pixels.",
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"items": {
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"type": "integer"
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},
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"maxItems": 2,
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"minItems": 2,
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"type": "array"
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},
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"name": {
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"_instruction": "Enter a descriptive name of this digital representation preferably matching the filename.",
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"type": "string"
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},
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"numberOfImages": {
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"_instruction": "Enter the total number of consecutive image planes (optical sections) in this stack (at least two).",
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"minimum": 2,
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"type": "integer"
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},
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"pixelSize": {
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"_embeddedTypes": [
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"core:QuantitativeValue"
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],
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"_instruction": "Enter the common physical pixel size for the consecutive image planes (optical sections) (in x,y order).",
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"maxItems": 2,
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"minItems": 2,
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"type": "array"
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},
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"z-stepSize": {
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"_embeddedTypes": [
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"core:QuantitativeValue"
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],
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"_instruction": "Enter the physical axial distance between consecutive image planes (optical sections) within this image stack."
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}
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}
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}
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‎schemas/data/rasterVolume.schema.tpl.json‎

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{
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"_type": "core:RasterVolume",
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"required": [
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"coordinateFramework",
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"dataLocation",
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"dimension",
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"voxelSize"
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],
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"properties": {
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"additionalRemarks": {
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"_instruction": "Enter any additional remarks concerning this digital representation.",
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"type": "string"
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},
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"capturedWith": {
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"_instruction": "Add the device used to capture this digital representation.",
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"_linkedCategories": [
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"deviceUsage"
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]
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},
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"coordinateFramework": {
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"_instruction": "Add the coordinate space in which this digital representation exists.",
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"_linkedTypes": [
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"sands:CommonCoordinateFrameworkVersion",
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"sands:CustomCoordinateFramework"
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]
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},
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"dataLocation": {
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"_instruction": "Add the location of the file or file bundle in which the digital representation is stored.",
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"_linkedTypes": [
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"core:File"
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]
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},
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"dimension": {
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"_instruction": "Enter the dimension of this volume.",
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"items": {
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"type": "integer"
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},
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"maxItems": 3,
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"minItems": 3,
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"type": "array"
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},
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"name": {
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"_instruction": "Enter a descriptive name of this digital representation preferably matching the filename.",
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"type": "string"
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},
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"numberOfPlanes": {
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"_instruction": "Enter number of planes in this volume.",
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"type": "integer"
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},
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"voxelSize": {
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"_embeddedTypes": [
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"core:QuantitativeValue"
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],
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"_instruction": "Enter the physical voxel size for this image (in x,y,z order).",
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"maxItems": 3,
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"minItems": 3,
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"type": "array"
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}
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}
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}
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‎schemas/data/rasterVolumeSequence.schema.tpl.json‎

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{
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"_type": "core:RasterVolumeSequence",
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"required": [
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"coordinateFramework",
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"dataLocation",
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"dimension",
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"temporalSamplingFrequency",
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"voxelSize"
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],
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"properties": {
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"additionalRemarks": {
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"_instruction": "Enter any additional remarks concerning this digital representation.",
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"type": "string"
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},
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"capturedWith": {
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"_instruction": "Add the device used to capture this digital representation.",
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"_linkedCategories": [
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"deviceUsage"
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]
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},
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"coordinateFramework": {
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"_instruction": "Add the coordinate space in which this digital representation exists.",
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"_linkedTypes": [
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"sands:CommonCoordinateFrameworkVersion",
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"sands:CustomCoordinateFramework"
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]
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},
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"dataLocation": {
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"_instruction": "Add the location of the file or file bundle in which the digital representation is stored.",
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"_linkedTypes": [
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"core:File"
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]
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},
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"dimension": {
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"_instruction": "Enter the dimension of this volume.",
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"items": {
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"type": "integer"
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},
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"maxItems": 3,
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"minItems": 3,
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"type": "array"
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},
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"name": {
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"_instruction": "Enter a descriptive name of this digital representation preferably matching the filename.",
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"type": "string"
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},
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"numberOfPlanes": {
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"_instruction": "Enter number of planes in this volume.",
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"type": "integer"
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},
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"numberOfVolumes": {
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"_instruction": "Enter the total number of volumes in this volume sequence (at least two).",
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"minimum": 2,
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"type": "integer"
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},
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"temporalSamplingFrequency": {
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"_embeddedTypes": [
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"core:QuantitativeValue"
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],
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"_instruction": "Enter the rate at which consecutive images (frames) are captured in a sequence, preferably measured in Hertz (Hz)."
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},
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"voxelSize": {
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"_embeddedTypes": [
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"core:QuantitativeValue"
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],
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"_instruction": "Enter the physical voxel size for this image (in x,y,z order).",
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"maxItems": 3,
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"minItems": 3,
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"type": "array"
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}
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}
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}
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