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Suggestion: OphysAcquisition: controlled terms #4

@Alixbonard

Description

@Alixbonard

The controlled terms related to this schema need to be validated. See the table below.

Field controlled terms
scanPattern raster, spiral, randomAccess, lightSheetPlane
scanningMode resonant, galvo, rollingShutter, global
imagingMode epifluorescence (a.k.a. one-photon, widefield), confocal (point scanning), spinningDiskConfocal, twoPhoton (2P), threePhoton (3P),lightSheet (SPIM)

NB: OphysAcquisition schema:

Field Description Required type
imagingMode The optical imaging modality used during acquisition Yes controlled term
scanPattern Pattern used by the scanner to traverse the sample (e.g., raster, spiral, randomAccess, lightSheetPlane). Optional controlled term
scanningMode Scanner mechanism or readout type Optional controlled term
--------------- ---------------------------------------------------- -------- ----
setup Add the setup used for this Yes linked -> OphysSetup
zoomFactor Dimensionless zoom setting applied in the microscope optics (affects FOV and pixel size). Optional number (dimensionless)
frameRate Imaging frame rate, expressed as the number of frames acquired per second. Yes QuantitativeValue
fieldOfView The spatial extent of the imaged region in micrometers (width, height, optional depth). Yes linkedCategories -> mathematicalShapes
pixelSize Effective sampling size of each pixel along x, y (and optional z) dimensions, in micrometers. Yes QuantitativeValueArray
numberOfPlanes Number of imaging planes acquired in the session (for multiplane or volumetric imaging). Optional integer
planeSeparation Distance between successive imaging planes, in micrometers. Optional QuantitativeValue
filterWheelPositions Filters or emission bands selected during the acquisition (e.g., 525/50 nm, 605/70 nm). Optional array of strings (wavelength bands)

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