CI: Fix Conda (#1672)

Fix failing Conda CI runner on Linux.

Author: ax3l

.github/workflows/codeql.yml

@@ -28,7 +28,7 @@ jobs:
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Install Packages
         run: |

.github/workflows/intel.yml

@@ -12,7 +12,7 @@ jobs:
     runs-on: ubuntu-20.04
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Install
       run: |
         sudo .github/workflows/dependencies/install_icc
@@ -39,7 +39,7 @@ jobs:
     runs-on: ubuntu-20.04
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Install
       run: |
         sudo .github/workflows/dependencies/install_icx

.github/workflows/linux.yml

@@ -11,7 +11,7 @@ jobs:
     runs-on: ubuntu-20.04
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Spack Cache
       uses: actions/cache@v3
       with: {path: /opt/spack, key: clang7_nopy_nompi_h5_libcpp_v2}
@@ -44,7 +44,7 @@ jobs:
     runs-on: ubuntu-20.04
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Spack Cache
       uses: actions/cache@v3
       with: {path: /opt/spack, key: clang7_nopy_ompi_h5_ad2_libcpp_v2}
@@ -87,7 +87,7 @@ jobs:
     runs-on: ubuntu-20.04
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Spack Cache
       uses: actions/cache@v3
       with: {path: /opt/spack, key: clang7_nopy_ompi_h5_ad2_v2 }
@@ -121,7 +121,7 @@ jobs:
     runs-on: ubuntu-22.04
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Spack Cache
       uses: actions/cache@v3
       with: {path: /opt/spack, key: clang14_py311_nompi_h5_ad2_v2 }
@@ -168,7 +168,7 @@ jobs:
     runs-on: ubuntu-20.04
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Spack Cache
       uses: actions/cache@v3
       with: {path: /opt/spack, key: clang8_py38_mpich_h5_ad2_newLayout_v2 }
@@ -217,7 +217,7 @@ jobs:
     runs-on: ubuntu-20.04
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Spack Cache
       uses: actions/cache@v3
       with: {path: /opt/spack, key: gcc7_py36_ompi_h5_ad2_v2 }
@@ -253,7 +253,7 @@ jobs:
     runs-on: ubuntu-20.04
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Install
       run: |
         sudo apt-get update
@@ -278,7 +278,7 @@ jobs:
     container:
       image: quay.io/pypa/musllinux_1_1_x86_64
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Install
       run: |
         apk update
@@ -304,29 +304,22 @@ jobs:
         ctest --output-on-failure
 
   conda_ompi_all:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-22.04
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - uses: conda-incubator/setup-miniconda@v3
       name: Setup conda
       with:
         auto-update-conda: true
-        activate-environment: testing
-        auto-activate-base: false
+        activate-environment: openpmd-api-dev
+        environment-file: conda.yml
         channels: conda-forge,defaults
         channel-priority: true
-    - name: Install
-      shell: bash -eo pipefail -l {0}
-      run: |
-        conda install -c conda-forge -y mamba
-        mamba env create --file conda.yml
     - name: Build
       shell: bash -eo pipefail -l {0}
       env: {CXXFLAGS: -Werror}
       run: |
-        source activate openpmd-api-dev
-
         share/openPMD/download_samples.sh build
         cmake -S . -B build \
           -DCMAKE_CXX_FLAGS="-Wno-error=stringop-overread" \

.github/workflows/macos.yml

@@ -16,7 +16,7 @@ jobs:
     runs-on: macos-latest
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Install
       run: |
         rm -rf /usr/local/bin/2to3
@@ -49,7 +49,7 @@ jobs:
     runs-on: macos-12
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Install
       env: {MACOSX_DEPLOYMENT_TARGET: 11.0}
       run: |

.github/workflows/nvidia.yml

@@ -13,7 +13,7 @@ jobs:
     if: github.event.pull_request.draft == false
     env: {CXX: nvcc, CXXFLAGS: "--forward-unknown-to-host-compiler -Xcompiler -Werror"}
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Dependencies
       run: .github/workflows/dependencies/install_nvcc11.sh
     - name: Build & Install
@@ -39,7 +39,7 @@ jobs:
     #   line 4314: error: variable "<unnamed>::autoRegistrar73" was declared but never referenced
     # env: {CXXFLAGS: "-Werror -Wno-deprecated-declarations"}
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Dependencies
       run: .github/workflows/dependencies/install_nvhpc21-11.sh
     - name: Build & Install

.github/workflows/source.yml

@@ -10,7 +10,7 @@ jobs:
   style:
     runs-on: ubuntu-22.04
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Non-ASCII Characters
       run: .github/workflows/source/hasNonASCII
     - name: TABs
@@ -26,7 +26,7 @@ jobs:
     runs-on: ubuntu-22.04
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: pyflakes
       run: |
         python3 -m pip install -U pyflakes
@@ -35,7 +35,7 @@ jobs:
   documentation:
     runs-on: ubuntu-22.04
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - uses: s-weigand/[email protected]
       with:
         update-conda: true
@@ -49,7 +49,7 @@ jobs:
     runs-on: ubuntu-latest
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: urls-checker
       uses: urlstechie/urlchecker-action@master
       with:

.github/workflows/tooling.yml

@@ -12,7 +12,7 @@ jobs:
     runs-on: ubuntu-20.04
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Spack Cache
       uses: actions/cache@v3
       with: {path: /opt/spack, key: clangtidy10_nopy_ompi_h5_ad2 }
@@ -40,7 +40,7 @@ jobs:
     runs-on: ubuntu-20.04
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Spack Cache
       uses: actions/cache@v3
       with: {path: /opt/spack, key: clang10_nopy_ompi_h5_ad2 }

.github/workflows/windows.yml

@@ -12,7 +12,7 @@ jobs:
     runs-on: windows-latest
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Build & Install
       run: |
         python3.exe -m pip install --upgrade pip
@@ -33,7 +33,7 @@ jobs:
     runs-on: windows-latest
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Build & Install
       run: |
         python3.exe -m pip install --upgrade pip setuptools wheel
@@ -56,7 +56,7 @@ jobs:
     runs-on: windows-2019
     if: github.event.pull_request.draft == false
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - uses: seanmiddleditch/gha-setup-ninja@master
     - name: Build & Install
       shell: cmd