openPMD_viewer will not plot #425
Description
Hello all, I am an intern trying to work with openPMD_viewer. I'm having problems getting plotted data using the viewer. The matplotlib notebook and matplotlib widget commands run without error and the GUI pops up but nothing seems to plot. I will attach a picture of what the view looks like. My environment I'm running from seems to have the right packages (jupyterlab and notebook) and so it is a confusing issue. Any help is appreciated, thank you. M
OS: Ventura Version 13.2.1
Here are the packages I'm working with
packages in environment at /Users/wodes/miniconda3/envs/Wake_T:
Name Version Build Channel
alabaster 0.7.16 pypi_0 pypi
anyio 4.4.0 pypi_0 pypi
applaunchservices 0.3.0 pypi_0 pypi
appnope 0.1.4 pypi_0 pypi
aptools 0.2.5 pypi_0 pypi
argon2-cffi 23.1.0 pypi_0 pypi
argon2-cffi-bindings 21.2.0 pypi_0 pypi
arrow 1.3.0 pypi_0 pypi
astroid 3.2.3 pypi_0 pypi
asttokens 2.4.1 pypi_0 pypi
async-lru 2.0.4 pypi_0 pypi
atomicwrites 1.4.1 pypi_0 pypi
attrs 23.2.0 pypi_0 pypi
autopep8 2.0.4 pypi_0 pypi
babel 2.15.0 pypi_0 pypi
beautifulsoup4 4.12.3 pypi_0 pypi
binaryornot 0.4.4 pypi_0 pypi
black 24.4.2 pypi_0 pypi
bleach 6.1.0 pypi_0 pypi
bzip2 1.0.8 h6c40b1e_6
c-ares 1.32.2 h51dda26_0 conda-forge
ca-certificates 2024.7.4 h8857fd0_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
certifi 2024.7.4 pypi_0 pypi
cffi 1.16.0 pypi_0 pypi
chardet 5.2.0 pypi_0 pypi
charset-normalizer 3.3.2 pypi_0 pypi
click 3.3 pypi_0 pypi
cloudpickle 3.0.0 pypi_0 pypi
comm 0.2.2 pypi_0 pypi
contourpy 1.2.1 pypi_0 pypi
cookiecutter 2.6.0 pypi_0 pypi
cycler 0.12.1 pypi_0 pypi
debugpy 1.8.2 pypi_0 pypi
decorator 5.1.1 pypi_0 pypi
defusedxml 0.7.1 pypi_0 pypi
deprecated 1.2.14 pypi_0 pypi
diff-match-patch 20230430 pypi_0 pypi
dill 0.3.8 pypi_0 pypi
docstring-to-markdown 0.15 pypi_0 pypi
docutils 0.21.2 pypi_0 pypi
executing 2.0.1 pypi_0 pypi
expat 2.6.2 hcec6c5f_0
fastjsonschema 2.20.0 pypi_0 pypi
fbpic 0.26.0 pypi_0 pypi
flake8 7.0.0 pypi_0 pypi
fonttools 4.53.1 pypi_0 pypi
fqdn 1.5.1 pypi_0 pypi
h11 0.14.0 pypi_0 pypi
h5py 3.11.0 nompi_py312hfc94b03_102 conda-forge
hdf5 1.14.3 nompi_h687a608_105 conda-forge
httpcore 1.0.5 pypi_0 pypi
httpx 0.27.0 pypi_0 pypi
icu 75.1 h120a0e1_0 conda-forge
idna 3.7 pypi_0 pypi
imagesize 1.4.1 pypi_0 pypi
importlib-metadata 8.0.0 pypi_0 pypi
inflection 0.5.1 pypi_0 pypi
intervaltree 3.1.0 pypi_0 pypi
ipykernel 6.29.5 pypi_0 pypi
ipympl 0.9.4 pypi_0 pypi
ipython 8.26.0 pypi_0 pypi
ipython-genutils 0.2.0 pypi_0 pypi
ipywidgets 8.1.3 pypi_0 pypi
isoduration 20.11.0 pypi_0 pypi
isort 5.13.2 pypi_0 pypi
jaraco-classes 3.4.0 pypi_0 pypi
jaraco-context 5.3.0 pypi_0 pypi
jaraco-functools 4.0.1 pypi_0 pypi
jedi 0.19.1 pypi_0 pypi
jellyfish 1.0.4 pypi_0 pypi
jinja2 3.1.4 pypi_0 pypi
json5 0.9.25 pypi_0 pypi
jsonpointer 3.0.0 pypi_0 pypi
jsonschema 4.23.0 pypi_0 pypi
jsonschema-specifications 2023.12.1 pypi_0 pypi
jupyter-client 8.6.2 pypi_0 pypi
jupyter-core 5.7.2 pypi_0 pypi
jupyter-events 0.10.0 pypi_0 pypi
jupyter-lsp 2.2.5 pypi_0 pypi
jupyter-server 2.14.2 pypi_0 pypi
jupyter-server-terminals 0.5.3 pypi_0 pypi
jupyterlab 4.2.3 pypi_0 pypi
jupyterlab-pygments 0.3.0 pypi_0 pypi
jupyterlab-server 2.27.3 pypi_0 pypi
jupyterlab-widgets 3.0.11 pypi_0 pypi
keyring 25.2.1 pypi_0 pypi
kiwisolver 1.4.5 pypi_0 pypi
krb5 1.21.3 h37d8d59_0 conda-forge
libaec 1.1.3 h73e2aa4_0 conda-forge
libblas 3.9.0 22_osx64_openblas conda-forge
libcblas 3.9.0 22_osx64_openblas conda-forge
libcurl 8.8.0 hf9fcc65_1 conda-forge
libcxx 18.1.8 hef8daea_0 conda-forge
libedit 3.1.20191231 h0678c8f_2 conda-forge
libev 4.33 h10d778d_2 conda-forge
libexpat 2.6.2 h73e2aa4_0 conda-forge
libffi 3.4.4 hecd8cb5_1
libgfortran 5.0.0 13_2_0_h97931a8_3 conda-forge
libgfortran5 13.2.0 h2873a65_3 conda-forge
libhwloc 2.11.1 default_h456cccd_1000 conda-forge
libiconv 1.17 hd75f5a5_2 conda-forge
liblapack 3.9.0 22_osx64_openblas conda-forge
libllvm14 14.0.6 hc8e404f_4 conda-forge
libnghttp2 1.58.0 h64cf6d3_1 conda-forge
libopenblas 0.3.27 openmp_h8869122_1 conda-forge
libsqlite 3.45.2 h92b6c6a_0 conda-forge
libssh2 1.11.0 hd019ec5_0 conda-forge
libxml2 2.12.7 heaf3512_4 conda-forge
libzlib 1.3.1 h87427d6_1 conda-forge
llvm-openmp 18.1.8 h15ab845_0 conda-forge
llvmlite 0.43.0 py312hdeb90da_0 conda-forge
markdown-it-py 3.0.0 pypi_0 pypi
markupsafe 2.1.5 pypi_0 pypi
matplotlib 3.9.1 pypi_0 pypi
matplotlib-inline 0.1.7 pypi_0 pypi
mccabe 0.7.0 pypi_0 pypi
mdurl 0.1.2 pypi_0 pypi
mistune 3.0.2 pypi_0 pypi
mkl 2023.2.0 h54c2260_50500 conda-forge
more-itertools 10.3.0 pypi_0 pypi
mpi 1.0 mpich conda-forge
mpi4py 3.1.6 py312h908beef_1 conda-forge
mpich 4.2.2 hd5a4e64_100 conda-forge
mypy-extensions 1.0.0 pypi_0 pypi
nbclient 0.10.0 pypi_0 pypi
nbconvert 7.16.4 pypi_0 pypi
nbformat 5.10.4 pypi_0 pypi
ncurses 6.4 hcec6c5f_0
nest-asyncio 1.6.0 pypi_0 pypi
notebook 7.2.1 pypi_0 pypi
notebook-shim 0.2.4 pypi_0 pypi
numba 0.60.0 py312hc3b515d_0 conda-forge
numpy 1.26.4 pypi_0 pypi
numpydoc 1.7.0 pypi_0 pypi
openpmd-api 0.15.2 pypi_0 pypi
openpmd-viewer 1.10.0 pypi_0 pypi
openssl 3.3.1 h87427d6_1 conda-forge
overrides 7.7.0 pypi_0 pypi
packaging 24.1 pypi_0 pypi
pandocfilters 1.5.1 pypi_0 pypi
parso 0.8.4 pypi_0 pypi
pathspec 0.12.1 pypi_0 pypi
pexpect 4.9.0 pypi_0 pypi
pickleshare 0.7.5 pypi_0 pypi
pillow 10.4.0 pypi_0 pypi
pip 24.0 py312hecd8cb5_0
platformdirs 4.2.2 pypi_0 pypi
pluggy 1.5.0 pypi_0 pypi
prometheus-client 0.20.0 pypi_0 pypi
prompt-toolkit 3.0.47 pypi_0 pypi
psutil 6.0.0 pypi_0 pypi
ptyprocess 0.7.0 pypi_0 pypi
pure-eval 0.2.2 pypi_0 pypi
pycodestyle 2.11.1 pypi_0 pypi
pycparser 2.22 pypi_0 pypi
pydocstyle 6.3.0 pypi_0 pypi
pyflakes 3.2.0 pypi_0 pypi
pygments 2.18.0 pypi_0 pypi
pylint 3.2.5 pypi_0 pypi
pylint-venv 3.0.3 pypi_0 pypi
pyls-spyder 0.4.0 pypi_0 pypi
pyobjc-core 10.3.1 pypi_0 pypi
pyobjc-framework-cocoa 10.3.1 pypi_0 pypi
pyobjc-framework-coreservices 10.3.1 pypi_0 pypi
pyobjc-framework-fsevents 10.3.1 pypi_0 pypi
pyparsing 3.1.2 pypi_0 pypi
pyqt5 5.15.10 pypi_0 pypi
pyqt5-qt5 5.15.14 pypi_0 pypi
pyqt5-sip 12.15.0 pypi_0 pypi
pyqtwebengine 5.15.6 pypi_0 pypi
pyqtwebengine-qt5 5.15.14 pypi_0 pypi
python 3.12.2 h9f0c242_0_cpython conda-forge
python-dateutil 2.9.0.post0 pypi_0 pypi
python-json-logger 2.0.7 pypi_0 pypi
python-lsp-black 2.0.0 pypi_0 pypi
python-lsp-jsonrpc 1.1.2 pypi_0 pypi
python-lsp-server 1.11.0 pypi_0 pypi
python-slugify 8.0.4 pypi_0 pypi
python_abi 3.12 4_cp312 conda-forge
pytoolconfig 1.3.1 pypi_0 pypi
pyyaml 6.0.1 pypi_0 pypi
pyzmq 26.0.3 pypi_0 pypi
qdarkstyle 3.2.3 pypi_0 pypi
qstylizer 0.2.3 pypi_0 pypi
qtawesome 1.3.1 pypi_0 pypi
qtconsole 5.5.2 pypi_0 pypi
qtpy 2.4.1 pypi_0 pypi
readline 8.2 hca72f7f_0
referencing 0.35.1 pypi_0 pypi
requests 2.32.3 pypi_0 pypi
rfc3339-validator 0.1.4 pypi_0 pypi
rfc3986-validator 0.1.1 pypi_0 pypi
rich 13.7.1 pypi_0 pypi
rope 1.13.0 pypi_0 pypi
rpds-py 0.19.0 pypi_0 pypi
rtree 1.3.0 pypi_0 pypi
scipy 1.14.0 py312hb9702fa_1 conda-forge
send2trash 1.8.3 pypi_0 pypi
setuptools 69.5.1 py312hecd8cb5_0
six 1.16.0 pypi_0 pypi
sniffio 1.3.1 pypi_0 pypi
snowballstemmer 2.2.0 pypi_0 pypi
sortedcontainers 2.4.0 pypi_0 pypi
soupsieve 2.5 pypi_0 pypi
sphinx 7.4.4 pypi_0 pypi
sphinxcontrib-applehelp 1.0.8 pypi_0 pypi
sphinxcontrib-devhelp 1.0.6 pypi_0 pypi
sphinxcontrib-htmlhelp 2.0.5 pypi_0 pypi
sphinxcontrib-jsmath 1.0.1 pypi_0 pypi
sphinxcontrib-qthelp 1.0.7 pypi_0 pypi
sphinxcontrib-serializinghtml 1.1.10 pypi_0 pypi
spyder 5.5.5 pypi_0 pypi
spyder-kernels 2.5.2 pypi_0 pypi
sqlite 3.45.2 h7461747_0 conda-forge
stack-data 0.6.3 pypi_0 pypi
sublime 0.1.0 pypi_0 pypi
tabulate 0.9.0 pypi_0 pypi
tbb 2021.12.0 h3c5361c_3 conda-forge
terminado 0.18.1 pypi_0 pypi
text-unidecode 1.3 pypi_0 pypi
textdistance 4.6.3 pypi_0 pypi
three-merge 0.1.1 pypi_0 pypi
tinycss2 1.3.0 pypi_0 pypi
tk 8.6.13 h1abcd95_1 conda-forge
tomli 2.0.1 pypi_0 pypi
tomlkit 0.13.0 pypi_0 pypi
tornado 6.4.1 pypi_0 pypi
tqdm 4.66.4 pypi_0 pypi
traitlets 5.14.3 pypi_0 pypi
types-python-dateutil 2.9.0.20240316 pypi_0 pypi
tzdata 2024a h04d1e81_0
ujson 5.10.0 pypi_0 pypi
uri-template 1.3.0 pypi_0 pypi
urllib3 2.2.2 pypi_0 pypi
wake-t 0.8.0 pypi_0 pypi
watchdog 4.0.1 pypi_0 pypi
wcwidth 0.2.13 pypi_0 pypi
webcolors 24.6.0 pypi_0 pypi
webencodings 0.5.1 pypi_0 pypi
websocket-client 1.8.0 pypi_0 pypi
whatthepatch 1.0.6 pypi_0 pypi
wheel 0.43.0 py312hecd8cb5_0
widgetsnbextension 4.0.11 pypi_0 pypi
wrapt 1.16.0 pypi_0 pypi
wurlitzer 3.1.1 pypi_0 pypi
xz 5.4.6 h6c40b1e_1
yapf 0.40.2 pypi_0 pypi
zipp 3.19.2 pypi_0 pypi
zlib 1.3.1 h87427d6_1 conda-forge
zstd 1.5.6 h915ae27_0 conda-forge