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Description
Description
Allen's V1 circuit uses different data models from our BBP models:
- nodes: in additional to biophysical nodes, it contains point_process nodes
- edges: chemical connection type Exp2Syn_synapse, and point_process connection type
Neurodamus should support the new nodes and edges types.
A neurodamus branch #422 has been used to validate the converted Allen's V1 circuit. It needs to be merged into main
Assets
Neurodamus
Technical implementation & specs
https://sonata-extension.readthedocs.io/en/latest/sonata_tech.html
Describe alternatives considered
n/a
Screenshots
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Additional context
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Acceptance criteria
- Add Allen's ion channel mod files and Exp2SynHelper.hoc to repo neurodamus-models
- Test with a small circuit in Neurodamus test (e.g. bmtk bio14 circuit?)
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