openclaw.plugin.json

{
  "id": "openclaw-medical-skills",
  "name": "OpenClaw Medical Skills",
  "description": "A curated collection of open-source medical and bioinformatics skills for AI agents",
  "version": "1.0.0",
  "skills": [
    "./skills/aav-vector-design-agent",
    "./skills/adaptyv",
    "./skills/adhd-daily-planner",
    "./skills/aeon",
    "./skills/agent-browser",
    "./skills/agentd-drug-discovery",
    "./skills/ai-analyzer",
    "./skills/alphafold",
    "./skills/alphafold-database",
    "./skills/anndata",
    "./skills/antibody-design-agent",
    "./skills/arboreto",
    "./skills/armored-cart-design-agent",
    "./skills/arxiv-search",
    "./skills/autonomous-oncology-agent",
    "./skills/bayesian-optimizer",
    "./skills/benchling-integration",
    "./skills/bgpt-paper-search",
    "./skills/bindcraft",
    "./skills/binder-design",
    "./skills/binding-characterization",
    "./skills/bindingdb-database",
    "./skills/bio-admet-prediction",
    "./skills/bio-alignment-files-bam-statistics",
    "./skills/bio-alignment-filtering",
    "./skills/bio-alignment-indexing",
    "./skills/bio-alignment-io",
    "./skills/bio-alignment-msa-parsing",
    "./skills/bio-alignment-msa-statistics",
    "./skills/bio-alignment-pairwise",
    "./skills/bio-alignment-sorting",
    "./skills/bio-alignment-validation",
    "./skills/bio-atac-seq-atac-peak-calling",
    "./skills/bio-atac-seq-atac-qc",
    "./skills/bio-atac-seq-differential-accessibility",
    "./skills/bio-atac-seq-footprinting",
    "./skills/bio-atac-seq-motif-deviation",
    "./skills/bio-atac-seq-nucleosome-positioning",
    "./skills/bio-basecalling",
    "./skills/bio-batch-downloads",
    "./skills/bio-batch-processing",
    "./skills/bio-bedgraph-handling",
    "./skills/bio-blast-searches",
    "./skills/bio-causal-genomics-colocalization-analysis",
    "./skills/bio-causal-genomics-fine-mapping",
    "./skills/bio-causal-genomics-mediation-analysis",
    "./skills/bio-causal-genomics-mendelian-randomization",
    "./skills/bio-causal-genomics-pleiotropy-detection",
    "./skills/bio-cfdna-preprocessing",
    "./skills/bio-chipseq-differential-binding",
    "./skills/bio-chipseq-motif-analysis",
    "./skills/bio-chipseq-peak-annotation",
    "./skills/bio-chipseq-peak-calling",
    "./skills/bio-chipseq-qc",
    "./skills/bio-chipseq-super-enhancers",
    "./skills/bio-chipseq-visualization",
    "./skills/bio-clinical-databases-clinvar-lookup",
    "./skills/bio-clinical-databases-dbsnp-queries",
    "./skills/bio-clinical-databases-gnomad-frequencies",
    "./skills/bio-clinical-databases-hla-typing",
    "./skills/bio-clinical-databases-myvariant-queries",
    "./skills/bio-clinical-databases-pharmacogenomics",
    "./skills/bio-clinical-databases-polygenic-risk",
    "./skills/bio-clinical-databases-somatic-signatures",
    "./skills/bio-clinical-databases-tumor-mutational-burden",
    "./skills/bio-clinical-databases-variant-prioritization",
    "./skills/bio-clip-seq-binding-site-annotation",
    "./skills/bio-clip-seq-clip-alignment",
    "./skills/bio-clip-seq-clip-motif-analysis",
    "./skills/bio-clip-seq-clip-peak-calling",
    "./skills/bio-clip-seq-clip-preprocessing",
    "./skills/bio-codon-usage",
    "./skills/bio-comparative-genomics-ancestral-reconstruction",
    "./skills/bio-comparative-genomics-hgt-detection",
    "./skills/bio-comparative-genomics-ortholog-inference",
    "./skills/bio-comparative-genomics-positive-selection",
    "./skills/bio-comparative-genomics-synteny-analysis",
    "./skills/bio-compressed-files",
    "./skills/bio-consensus-sequences",
    "./skills/bio-copy-number-cnv-annotation",
    "./skills/bio-copy-number-cnv-visualization",
    "./skills/bio-copy-number-cnvkit-analysis",
    "./skills/bio-copy-number-gatk-cnv",
    "./skills/bio-crispr-screens-base-editing-analysis",
    "./skills/bio-crispr-screens-batch-correction",
    "./skills/bio-crispr-screens-crispresso-editing",
    "./skills/bio-crispr-screens-hit-calling",
    "./skills/bio-crispr-screens-jacks-analysis",
    "./skills/bio-crispr-screens-library-design",
    "./skills/bio-crispr-screens-mageck-analysis",
    "./skills/bio-crispr-screens-screen-qc",
    "./skills/bio-ctdna-mutation-detection",
    "./skills/bio-data-visualization-circos-plots",
    "./skills/bio-data-visualization-color-palettes",
    "./skills/bio-data-visualization-genome-browser-tracks",
    "./skills/bio-data-visualization-genome-tracks",
    "./skills/bio-data-visualization-ggplot2-fundamentals",
    "./skills/bio-data-visualization-heatmaps-clustering",
    "./skills/bio-data-visualization-interactive-visualization",
    "./skills/bio-data-visualization-multipanel-figures",
    "./skills/bio-data-visualization-specialized-omics-plots",
    "./skills/bio-data-visualization-upset-plots",
    "./skills/bio-data-visualization-volcano-customization",
    "./skills/bio-de-deseq2-basics",
    "./skills/bio-de-edger-basics",
    "./skills/bio-de-results",
    "./skills/bio-de-visualization",
    "./skills/bio-differential-expression-batch-correction",
    "./skills/bio-differential-expression-timeseries-de",
    "./skills/bio-differential-splicing",
    "./skills/bio-duplicate-handling",
    "./skills/bio-entrez-fetch",
    "./skills/bio-entrez-link",
    "./skills/bio-entrez-search",
    "./skills/bio-epidemiological-genomics-amr-surveillance",
    "./skills/bio-epidemiological-genomics-pathogen-typing",
    "./skills/bio-epidemiological-genomics-phylodynamics",
    "./skills/bio-epidemiological-genomics-transmission-inference",
    "./skills/bio-epidemiological-genomics-variant-surveillance",
    "./skills/bio-epitranscriptomics-m6a-differential",
    "./skills/bio-epitranscriptomics-m6a-peak-calling",
    "./skills/bio-epitranscriptomics-m6anet-analysis",
    "./skills/bio-epitranscriptomics-merip-preprocessing",
    "./skills/bio-epitranscriptomics-modification-visualization",
    "./skills/bio-experimental-design-batch-design",
    "./skills/bio-experimental-design-multiple-testing",
    "./skills/bio-experimental-design-power-analysis",
    "./skills/bio-experimental-design-sample-size",
    "./skills/bio-expression-matrix-counts-ingest",
    "./skills/bio-expression-matrix-gene-id-mapping",
    "./skills/bio-expression-matrix-metadata-joins",
    "./skills/bio-expression-matrix-sparse-handling",
    "./skills/bio-fastq-quality",
    "./skills/bio-filter-sequences",
    "./skills/bio-flow-cytometry-bead-normalization",
    "./skills/bio-flow-cytometry-clustering-phenotyping",
    "./skills/bio-flow-cytometry-compensation-transformation",
    "./skills/bio-flow-cytometry-cytometry-qc",
    "./skills/bio-flow-cytometry-differential-analysis",
    "./skills/bio-flow-cytometry-doublet-detection",
    "./skills/bio-flow-cytometry-fcs-handling",
    "./skills/bio-flow-cytometry-gating-analysis",
    "./skills/bio-format-conversion",
    "./skills/bio-fragment-analysis",
    "./skills/bio-gatk-variant-calling",
    "./skills/bio-genome-assembly-assembly-polishing",
    "./skills/bio-genome-assembly-assembly-qc",
    "./skills/bio-genome-assembly-contamination-detection",
    "./skills/bio-genome-assembly-hifi-assembly",
    "./skills/bio-genome-assembly-long-read-assembly",
    "./skills/bio-genome-assembly-metagenome-assembly",
    "./skills/bio-genome-assembly-scaffolding",
    "./skills/bio-genome-assembly-short-read-assembly",
    "./skills/bio-genome-engineering-base-editing-design",
    "./skills/bio-genome-engineering-grna-design",
    "./skills/bio-genome-engineering-hdr-template-design",
    "./skills/bio-genome-engineering-off-target-prediction",
    "./skills/bio-genome-engineering-prime-editing-design",
    "./skills/bio-genome-intervals-bed-file-basics",
    "./skills/bio-genome-intervals-bigwig-tracks",
    "./skills/bio-genome-intervals-coverage-analysis",
    "./skills/bio-genome-intervals-gtf-gff-handling",
    "./skills/bio-genome-intervals-interval-arithmetic",
    "./skills/bio-genome-intervals-proximity-operations",
    "./skills/bio-geo-data",
    "./skills/bio-hi-c-analysis-compartment-analysis",
    "./skills/bio-hi-c-analysis-contact-pairs",
    "./skills/bio-hi-c-analysis-hic-data-io",
    "./skills/bio-hi-c-analysis-hic-differential",
    "./skills/bio-hi-c-analysis-hic-visualization",
    "./skills/bio-hi-c-analysis-loop-calling",
    "./skills/bio-hi-c-analysis-matrix-operations",
    "./skills/bio-hi-c-analysis-tad-detection",
    "./skills/bio-imaging-mass-cytometry-cell-segmentation",
    "./skills/bio-imaging-mass-cytometry-data-preprocessing",
    "./skills/bio-imaging-mass-cytometry-interactive-annotation",
    "./skills/bio-imaging-mass-cytometry-phenotyping",
    "./skills/bio-imaging-mass-cytometry-quality-metrics",
    "./skills/bio-imaging-mass-cytometry-spatial-analysis",
    "./skills/bio-immunoinformatics-epitope-prediction",
    "./skills/bio-immunoinformatics-immunogenicity-scoring",
    "./skills/bio-immunoinformatics-mhc-binding-prediction",
    "./skills/bio-immunoinformatics-neoantigen-prediction",
    "./skills/bio-immunoinformatics-tcr-epitope-binding",
    "./skills/bio-isoform-switching",
    "./skills/bio-liquid-biopsy-pipeline",
    "./skills/bio-local-blast",
    "./skills/bio-long-read-sequencing-clair3-variants",
    "./skills/bio-long-read-sequencing-isoseq-analysis",
    "./skills/bio-long-read-sequencing-nanopore-methylation",
    "./skills/bio-longitudinal-monitoring",
    "./skills/bio-longread-alignment",
    "./skills/bio-longread-medaka",
    "./skills/bio-longread-qc",
    "./skills/bio-longread-structural-variants",
    "./skills/bio-machine-learning-atlas-mapping",
    "./skills/bio-machine-learning-biomarker-discovery",
    "./skills/bio-machine-learning-model-validation",
    "./skills/bio-machine-learning-omics-classifiers",
    "./skills/bio-machine-learning-prediction-explanation",
    "./skills/bio-machine-learning-survival-analysis",
    "./skills/bio-metabolomics-lipidomics",
    "./skills/bio-metabolomics-metabolite-annotation",
    "./skills/bio-metabolomics-msdial-preprocessing",
    "./skills/bio-metabolomics-normalization-qc",
    "./skills/bio-metabolomics-pathway-mapping",
    "./skills/bio-metabolomics-statistical-analysis",
    "./skills/bio-metabolomics-targeted-analysis",
    "./skills/bio-metabolomics-xcms-preprocessing",
    "./skills/bio-metagenomics-abundance",
    "./skills/bio-metagenomics-amr-detection",
    "./skills/bio-metagenomics-functional-profiling",
    "./skills/bio-metagenomics-kraken",
    "./skills/bio-metagenomics-metaphlan",
    "./skills/bio-metagenomics-strain-tracking",
    "./skills/bio-metagenomics-visualization",
    "./skills/bio-methylation-based-detection",
    "./skills/bio-methylation-bismark-alignment",
    "./skills/bio-methylation-calling",
    "./skills/bio-methylation-dmr-detection",
    "./skills/bio-methylation-methylkit",
    "./skills/bio-microbiome-amplicon-processing",
    "./skills/bio-microbiome-differential-abundance",
    "./skills/bio-microbiome-diversity-analysis",
    "./skills/bio-microbiome-functional-prediction",
    "./skills/bio-microbiome-qiime2-workflow",
    "./skills/bio-microbiome-taxonomy-assignment",
    "./skills/bio-molecular-descriptors",
    "./skills/bio-molecular-io",
    "./skills/bio-motif-search",
    "./skills/bio-multi-omics-data-harmonization",
    "./skills/bio-multi-omics-mixomics-analysis",
    "./skills/bio-multi-omics-mofa-integration",
    "./skills/bio-multi-omics-similarity-network",
    "./skills/bio-orchestrator",
    "./skills/bio-paired-end-fastq",
    "./skills/bio-pathway-enrichment-visualization",
    "./skills/bio-pathway-go-enrichment",
    "./skills/bio-pathway-gsea",
    "./skills/bio-pathway-kegg-pathways",
    "./skills/bio-pathway-reactome",
    "./skills/bio-pathway-wikipathways",
    "./skills/bio-pdb-geometric-analysis",
    "./skills/bio-pdb-structure-io",
    "./skills/bio-pdb-structure-modification",
    "./skills/bio-pdb-structure-navigation",
    "./skills/bio-phasing-imputation-genotype-imputation",
    "./skills/bio-phasing-imputation-haplotype-phasing",
    "./skills/bio-phasing-imputation-imputation-qc",
    "./skills/bio-phasing-imputation-reference-panels",
    "./skills/bio-phylo-distance-calculations",
    "./skills/bio-phylo-modern-tree-inference",
    "./skills/bio-phylo-tree-io",
    "./skills/bio-phylo-tree-manipulation",
    "./skills/bio-phylo-tree-visualization",
    "./skills/bio-pileup-generation",
    "./skills/bio-population-genetics-association-testing",
    "./skills/bio-population-genetics-linkage-disequilibrium",
    "./skills/bio-population-genetics-plink-basics",
    "./skills/bio-population-genetics-population-structure",
    "./skills/bio-population-genetics-scikit-allel-analysis",
    "./skills/bio-population-genetics-selection-statistics",
    "./skills/bio-primer-design-primer-basics",
    "./skills/bio-primer-design-primer-validation",
    "./skills/bio-primer-design-qpcr-primers",
    "./skills/bio-proteomics-data-import",
    "./skills/bio-proteomics-dia-analysis",
    "./skills/bio-proteomics-differential-abundance",
    "./skills/bio-proteomics-peptide-identification",
    "./skills/bio-proteomics-protein-inference",
    "./skills/bio-proteomics-proteomics-qc",
    "./skills/bio-proteomics-ptm-analysis",
    "./skills/bio-proteomics-quantification",
    "./skills/bio-proteomics-spectral-libraries",
    "./skills/bio-reaction-enumeration",
    "./skills/bio-read-alignment-bowtie2-alignment",
    "./skills/bio-read-alignment-bwa-alignment",
    "./skills/bio-read-alignment-hisat2-alignment",
    "./skills/bio-read-alignment-star-alignment",
    "./skills/bio-read-qc-adapter-trimming",
    "./skills/bio-read-qc-contamination-screening",
    "./skills/bio-read-qc-fastp-workflow",
    "./skills/bio-read-qc-quality-filtering",
    "./skills/bio-read-qc-quality-reports",
    "./skills/bio-read-qc-umi-processing",
    "./skills/bio-read-sequences",
    "./skills/bio-reference-operations",
    "./skills/bio-reporting-automated-qc-reports",
    "./skills/bio-reporting-figure-export",
    "./skills/bio-reporting-jupyter-reports",
    "./skills/bio-reporting-quarto-reports",
    "./skills/bio-reporting-rmarkdown-reports",
    "./skills/bio-research-tools-biomarker-signature-studio",
    "./skills/bio-restriction-enzyme-selection",
    "./skills/bio-restriction-fragment-analysis",
    "./skills/bio-restriction-mapping",
    "./skills/bio-restriction-sites",
    "./skills/bio-reverse-complement",
    "./skills/bio-ribo-seq-orf-detection",
    "./skills/bio-ribo-seq-riboseq-preprocessing",
    "./skills/bio-ribo-seq-ribosome-periodicity",
    "./skills/bio-ribo-seq-ribosome-stalling",
    "./skills/bio-ribo-seq-translation-efficiency",
    "./skills/bio-rna-quantification-alignment-free-quant",
    "./skills/bio-rna-quantification-count-matrix-qc",
    "./skills/bio-rna-quantification-featurecounts-counting",
    "./skills/bio-rna-quantification-tximport-workflow",
    "./skills/bio-rnaseq-qc",
    "./skills/bio-sam-bam-basics",
    "./skills/bio-sashimi-plots",
    "./skills/bio-seq-objects",
    "./skills/bio-sequence-properties",
    "./skills/bio-sequence-similarity",
    "./skills/bio-sequence-slicing",
    "./skills/bio-sequence-statistics",
    "./skills/bio-similarity-searching",
    "./skills/bio-single-cell-batch-integration",
    "./skills/bio-single-cell-cell-annotation",
    "./skills/bio-single-cell-cell-communication",
    "./skills/bio-single-cell-clustering",
    "./skills/bio-single-cell-data-io",
    "./skills/bio-single-cell-doublet-detection",
    "./skills/bio-single-cell-lineage-tracing",
    "./skills/bio-single-cell-markers-annotation",
    "./skills/bio-single-cell-metabolite-communication",
    "./skills/bio-single-cell-multimodal-integration",
    "./skills/bio-single-cell-perturb-seq",
    "./skills/bio-single-cell-preprocessing",
    "./skills/bio-single-cell-scatac-analysis",
    "./skills/bio-single-cell-splicing",
    "./skills/bio-single-cell-trajectory-inference",
    "./skills/bio-small-rna-seq-differential-mirna",
    "./skills/bio-small-rna-seq-mirdeep2-analysis",
    "./skills/bio-small-rna-seq-mirge3-analysis",
    "./skills/bio-small-rna-seq-smrna-preprocessing",
    "./skills/bio-small-rna-seq-target-prediction",
    "./skills/bio-spatial-transcriptomics-image-analysis",
    "./skills/bio-spatial-transcriptomics-spatial-communication",
    "./skills/bio-spatial-transcriptomics-spatial-data-io",
    "./skills/bio-spatial-transcriptomics-spatial-deconvolution",
    "./skills/bio-spatial-transcriptomics-spatial-domains",
    "./skills/bio-spatial-transcriptomics-spatial-multiomics",
    "./skills/bio-spatial-transcriptomics-spatial-neighbors",
    "./skills/bio-spatial-transcriptomics-spatial-preprocessing",
    "./skills/bio-spatial-transcriptomics-spatial-proteomics",
    "./skills/bio-spatial-transcriptomics-spatial-statistics",
    "./skills/bio-spatial-transcriptomics-spatial-visualization",
    "./skills/bio-splicing-pipeline",
    "./skills/bio-splicing-qc",
    "./skills/bio-splicing-quantification",
    "./skills/bio-sra-data",
    "./skills/bio-structural-biology-alphafold-predictions",
    "./skills/bio-structural-biology-modern-structure-prediction",
    "./skills/bio-substructure-search",
    "./skills/bio-systems-biology-context-specific-models",
    "./skills/bio-systems-biology-flux-balance-analysis",
    "./skills/bio-systems-biology-gene-essentiality",
    "./skills/bio-systems-biology-metabolic-reconstruction",
    "./skills/bio-systems-biology-model-curation",
    "./skills/bio-tcr-bcr-analysis-immcantation-analysis",
    "./skills/bio-tcr-bcr-analysis-mixcr-analysis",
    "./skills/bio-tcr-bcr-analysis-repertoire-visualization",
    "./skills/bio-tcr-bcr-analysis-scirpy-analysis",
    "./skills/bio-tcr-bcr-analysis-vdjtools-analysis",
    "./skills/bio-transcription-translation",
    "./skills/bio-tumor-fraction-estimation",
    "./skills/bio-uniprot-access",
    "./skills/bio-variant-annotation",
    "./skills/bio-variant-calling",
    "./skills/bio-variant-calling-clinical-interpretation",
    "./skills/bio-variant-calling-deepvariant",
    "./skills/bio-variant-calling-filtering-best-practices",
    "./skills/bio-variant-calling-joint-calling",
    "./skills/bio-variant-calling-structural-variant-calling",
    "./skills/bio-variant-normalization",
    "./skills/bio-vcf-basics",
    "./skills/bio-vcf-manipulation",
    "./skills/bio-vcf-statistics",
    "./skills/bio-virtual-screening",
    "./skills/bio-workflow-management-cwl-workflows",
    "./skills/bio-workflow-management-nextflow-pipelines",
    "./skills/bio-workflow-management-snakemake-workflows",
    "./skills/bio-workflow-management-wdl-workflows",
    "./skills/bio-workflows-atacseq-pipeline",
    "./skills/bio-workflows-biomarker-pipeline",
    "./skills/bio-workflows-chipseq-pipeline",
    "./skills/bio-workflows-clip-pipeline",
    "./skills/bio-workflows-cnv-pipeline",
    "./skills/bio-workflows-crispr-editing-pipeline",
    "./skills/bio-workflows-crispr-screen-pipeline",
    "./skills/bio-workflows-cytometry-pipeline",
    "./skills/bio-workflows-expression-to-pathways",
    "./skills/bio-workflows-fastq-to-variants",
    "./skills/bio-workflows-genome-assembly-pipeline",
    "./skills/bio-workflows-gwas-pipeline",
    "./skills/bio-workflows-hic-pipeline",
    "./skills/bio-workflows-imc-pipeline",
    "./skills/bio-workflows-longread-sv-pipeline",
    "./skills/bio-workflows-merip-pipeline",
    "./skills/bio-workflows-metabolic-modeling-pipeline",
    "./skills/bio-workflows-metabolomics-pipeline",
    "./skills/bio-workflows-metagenomics-pipeline",
    "./skills/bio-workflows-methylation-pipeline",
    "./skills/bio-workflows-microbiome-pipeline",
    "./skills/bio-workflows-multi-omics-pipeline",
    "./skills/bio-workflows-multiome-pipeline",
    "./skills/bio-workflows-neoantigen-pipeline",
    "./skills/bio-workflows-outbreak-pipeline",
    "./skills/bio-workflows-proteomics-pipeline",
    "./skills/bio-workflows-riboseq-pipeline",
    "./skills/bio-workflows-rnaseq-to-de",
    "./skills/bio-workflows-scrnaseq-pipeline",
    "./skills/bio-workflows-smrna-pipeline",
    "./skills/bio-workflows-somatic-variant-pipeline",
    "./skills/bio-workflows-spatial-pipeline",
    "./skills/bio-workflows-tcr-pipeline",
    "./skills/bio-write-sequences",
    "./skills/bioinformatics-singlecell",
    "./skills/biokernel",
    "./skills/biologist-analyst",
    "./skills/biomaster-workflows",
    "./skills/biomcp-server",
    "./skills/biomedical-data-analysis",
    "./skills/biomedical-search",
    "./skills/biomni",
    "./skills/biomni-general-agent",
    "./skills/biomni-research-agent",
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