storage: add missing javadoc on VariantMongoDBAdaptor.updateAnnotatio… #6
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| name: Manual deploy R builder | ||
| on: | ||
| workflow_dispatch: | ||
| jobs: | ||
| build: | ||
| uses: zetta-genomics/java-common-libs/.github/workflows/build-java-app-workflow.yml@develop | ||
| with: | ||
| needs_hadoop_preparation: true | ||
| hadoop_flavour: ${{ vars.HADOOP_FLAVOUR }} | ||
| maven_opts: -P${{ vars.HADOOP_FLAVOUR }} -Dopencga.war.name=opencga -Dcheckstyle.skip | ||
| dependency_repos: "java-common-libs,biodata" | ||
| secrets: inherit | ||
| build-and-push-docker: | ||
| runs-on: ubuntu-latest | ||
| needs: build | ||
| steps: | ||
| - name: Checkout repository | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| persist-credentials: false | ||
| token: ${{ secrets.ZETTA_GH_TOKEN }} | ||
| - uses: actions/download-artifact@v4 | ||
| with: | ||
| name: build-folder | ||
| path: build | ||
| - name: Set up Docker Buildx | ||
| uses: docker/setup-buildx-action@v3 | ||
| - name: Log in to Docker Hub | ||
| uses: docker/login-action@v3 | ||
| with: | ||
| username: ${{ secrets.DOCKER_HUB_USER }} | ||
| password: ${{ secrets.DOCKER_HUB_PASSWORD }} | ||
| logout: true | ||
| - name: Extract Docker image tag from project version | ||
| id: version | ||
| run: | | ||
| TAG=$(grep 'Version:' build/clients/R/DESCRIPTION | cut -d' ' -f2) | ||
| echo "version=$TAG" >> $GITHUB_OUTPUT | ||
| - name: Build and push Docker image | ||
| uses: docker/build-push-action@v5 | ||
| with: | ||
| context: "{{defaultContext}}:opencga-app/app/cloud/docker/opencga-r-builder/" | ||
| push: true | ||
| tags: | | ||
| opencb/opencga-r-builder:latest | ||
| opencb/opencga-r-builder:${{ steps.version.outputs.version }} | ||
