Merge pull request #2409 from farid-zare/CI

Update codecov.yml
opencobra · Feb 3, 2025 · 2fa2868 · 2fa2868
2 parents 260f2b2 + da8d66e
commit 2fa2868
Showing 1 changed file with 7 additions and 41 deletions.
diff --git a/.github/workflows/codecov.yml b/.github/workflows/codecov.yml
@@ -18,51 +18,17 @@ jobs:
 
       - name: Run MATLAB Tests
         run: |
-          matlab -batch "run('cobratoolbox/initCobraToolbox.m'); diary('test_results.txt'); run('cobratoolbox/test/testAll.m'); diary off;"
+          matlab -batch "run('cobratoolbox/initCobraToolbox.m'); diary('cobratoolbox/test_results.txt'); run('cobratoolbox/test/testAll.m'); diary off;"
 
       - name: Upload Test Report
         uses: actions/upload-artifact@v4
         with:
           name: test-report
-          path: |
-            test_results.txt
-            cobratoolbox/CodeCovTestResults.xml
+          path: cobratoolbox/test_results.txt  # Correct path
 
-      # Parse Test Results and Comment on PR using regex
-      - name: Parse Test Results and Comment on PR
-        uses: actions/github-script@v5
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      - name: Upload Coverage to Codecov
+        if: always()
+        uses: codecov/codecov-action@v3
         with:
-          script: |
-            const fs = require('fs');
-            const xml = fs.readFileSync('cobratoolbox/CodeCovTestResults.xml', 'utf8');
-
-            // Extract data using regex
-            const passedRegex = /tests="(\d+)" failures="(\d+)" errors="(\d+)" skipped="(\d+)"/;
-            const matches = passedRegex.exec(xml);
-            const totalTests = matches[1];
-            const failures = matches[2];
-            const errors = matches[3];
-            const skipped = matches[4];
-
-            let summary = `Test Results: Passed: ${totalTests - failures - skipped}, Failed: ${failures}, Errors: ${errors}, Skipped: ${skipped}`;
-
-            // Find failed tests
-            const failedTestsRegex = /<testcase classname="[^"]*" name="([^"]+)"[^>]*>\s*<(error|failure)[^>]*>([^<]*)<\/(error|failure)>/g;
-            let failedTestDetails = '';
-            let match;
-            while ((match = failedTestsRegex.exec(xml)) !== null) {
-              failedTestDetails += `\n* ${match[1]}: ${match[3]}`;
-            }
-
-            if (failedTestDetails.length > 0) {
-              summary += `\n\nFailed Tests:${failedTestDetails}`;
-            }
-
-            github.rest.issues.createComment({
-              issue_number: context.issue.number,
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              body: summary
-            });
+          files: cobratoolbox/CodeCovTestResults.xml  # Correct path
+