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lines changed- docs/source/installation
- external
- base/plots
- panel
- demo
- docs
- visualization
- src
- analysis
- FBA
- subspaces/nullspace
- thermo
- experimentalData
- utilities
- vonBertalanffy
- topology
- extremeRays/lrs
- lrsInterface
- wholeBody/PSCMToolbox
- hostMicrobeInteraction
- io
- base
- install
- solvers
- entropicFBA
- getSetSolver
- msk
- param
- varKin
- chatGPT/MatGPT
- contents
- helpers
- cobrarrow
- dataIntegration/XomicsToModel
- reconstruction
- modelGeneration/stoichConsistency
- refinement
- test/verifiedTests
- analysis/testTopology
- dataIntegration/testMetanetxMapper
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