diff --git a/stable/_static/img/icon5.png b/stable/_static/img/icon5.png
new file mode 100644
index 0000000000..f8cbdde3c8
Binary files /dev/null and b/stable/_static/img/icon5.png differ
diff --git a/stable/_static/img/icon6.png b/stable/_static/img/icon6.png
new file mode 100644
index 0000000000..420c0803cd
Binary files /dev/null and b/stable/_static/img/icon6.png differ
diff --git a/stable/_static/img/icon7.png b/stable/_static/img/icon7.png
new file mode 100644
index 0000000000..863afdfab3
Binary files /dev/null and b/stable/_static/img/icon7.png differ
diff --git a/stable/_static/img/icon8.png b/stable/_static/img/icon8.png
new file mode 100644
index 0000000000..1adeec5795
Binary files /dev/null and b/stable/_static/img/icon8.png differ
diff --git a/stable/_static/img/icon_tut.png b/stable/_static/img/icon_tut.png
new file mode 100644
index 0000000000..b6c88a982d
Binary files /dev/null and b/stable/_static/img/icon_tut.png differ
diff --git a/stable/tutorials/HOLDER_TEMPLATE.html b/stable/tutorials/HOLDER_TEMPLATE.html
index ab4bb2b193..a315227b3a 100644
--- a/stable/tutorials/HOLDER_TEMPLATE.html
+++ b/stable/tutorials/HOLDER_TEMPLATE.html
@@ -122,7 +122,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -157,6 +157,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 
           
@@ -195,36 +196,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
     <ul class="metro">
         <li class="small-tile-text color_class5 scale-10">
-            <a class="tile" style="width: 90px; height: 90px;" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.pdf">
-                <img src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png" height="90px" alt="PDF file">
+            <a class="tile" style="width: 90px; height: 90px;" href="../_static/cobratoolbox/tutorials/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.pdf">
+                <img src="../_static/img/icon5.png" height="90px" alt="PDF file">
             </a>
             <div>Download PDF</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class6 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.mlx">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png" height="90px" alt="live Script">
+            <img src="../_static/img/icon6.png" height="90px" alt="live Script">
             </a>
               <div>Download live Script</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class7 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.m">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png" height="90px" alt="m file">
+            <img src="../_static/img/icon7.png" height="90px" alt="m file">
             </a>
               <div>Download m file</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class8 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/constrainingModels">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png" height="90px" alt="GitHub">
+            <img src="../_static/img/icon8.png" height="90px" alt="GitHub">
             </a>
               <div>View on GitHub</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class2 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png" height="90px" alt="tutorials">
+            <img src="../_static/img/icon2.png" height="90px" alt="tutorials">
             </a>
               <div>Tutorials</div>
         </li>
diff --git a/stable/tutorials/TEST3.html b/stable/tutorials/TEST3.html
index 946a8828e1..77b261248d 100644
--- a/stable/tutorials/TEST3.html
+++ b/stable/tutorials/TEST3.html
@@ -80,7 +80,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -126,6 +126,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -153,7 +154,7 @@ <h1>The COBRA Toolbox</h1>
 <style>h2 {font-size:0px;}</style><div class="section" id="analysis">
 <h2>Analysis<a class="headerlink" href="#analysis" title="Permalink to this headline">¶</a></h2>
 <div class="tutorialSectionBox analysis">
-<div class="sectionLogo"><img alt="analysis" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_analysis_wb.png"/></div>
+<div class="sectionLogo"><img alt="analysis" class="avatar" src="../_static/cobratoolbox/img/icon_analysis_wb.png"/></div>
 <div class="sectionTitle"><h3>Analysis<a class="headerlink" href="#analysis" title="Permalink to this headline">¶</a></h3></div>
 <div class="sectionContent"><ul class="simple">
 QWERTYtutorialAtomicallyResolveReconstruction.html
@@ -206,7 +207,7 @@ <h2>Analysis<a class="headerlink" href="#analysis" title="Permalink to this head
 <div class="section" id="base">
 <h2>Base<a class="headerlink" href="#base" title="Permalink to this headline">¶</a></h2>
 <div class="tutorialSectionBox base">
-<div class="sectionLogo"><img alt="base" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_base_wb.png"/></div>
+<div class="sectionLogo"><img alt="base" class="avatar" src="../_static/cobratoolbox/img/icon_base_wb.png"/></div>
 <div class="sectionTitle"><h3>Base<a class="headerlink" href="#base" title="Permalink to this headline">¶</a></h3></div>
 <div class="sectionContent"><ul class="simple">
 QWERTYtutorialContribute.html
@@ -227,7 +228,7 @@ <h2>Base<a class="headerlink" href="#base" title="Permalink to this headline">¶
 <div class="section" id="data-integration">
 <h2>Data integration<a class="headerlink" href="#data-integration" title="Permalink to this headline">¶</a></h2>
 <div class="tutorialSectionBox dataIntegration">
-<div class="sectionLogo"><img alt="dataIntegration" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_dataIntegration_wb.png"/></div>
+<div class="sectionLogo"><img alt="dataIntegration" class="avatar" src="../_static/cobratoolbox/img/icon_dataIntegration_wb.png"/></div>
 <div class="sectionTitle"><h3>Data integration<a class="headerlink" href="#dataIntegration" title="Permalink to this headline">¶</a></h3></div>
 <div class="sectionContent"><ul class="simple">
 QWERTYtutorialExtractionTranscriptomic.html
@@ -241,7 +242,7 @@ <h2>Data integration<a class="headerlink" href="#data-integration" title="Permal
 <div class="section" id="design">
 <h2>Design<a class="headerlink" href="#design" title="Permalink to this headline">¶</a></h2>
 <div class="tutorialSectionBox design">
-<div class="sectionLogo"><img alt="design" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_design_wb.png"/></div>
+<div class="sectionLogo"><img alt="design" class="avatar" src="../_static/cobratoolbox/img/icon_design_wb.png"/></div>
 <div class="sectionTitle"><h3>Design<a class="headerlink" href="#design" title="Permalink to this headline">¶</a></h3></div>
 <div class="sectionContent"><ul class="simple">
 QWERTYtutorialOptForceGAMS.html
@@ -255,7 +256,7 @@ <h2>Design<a class="headerlink" href="#design" title="Permalink to this headline
 <div class="section" id="reconstruction">
 <h2>Reconstruction<a class="headerlink" href="#reconstruction" title="Permalink to this headline">¶</a></h2>
 <div class="tutorialSectionBox reconstruction">
-<div class="sectionLogo"><img alt="reconstruction" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_reconstruction_wb.png"/></div>
+<div class="sectionLogo"><img alt="reconstruction" class="avatar" src="../_static/cobratoolbox/img/icon_reconstruction_wb.png"/></div>
 <div class="sectionTitle"><h3>Reconstruction<a class="headerlink" href="#reconstruction" title="Permalink to this headline">¶</a></h3></div>
 <div class="sectionContent"><ul class="simple">
 QWERTYtutorialCOBRAconcepts.html
@@ -288,7 +289,7 @@ <h2>Reconstruction<a class="headerlink" href="#reconstruction" title="Permalink
 <li></li>
 </ul>
 <div class="tutorialSectionBox">
-<div class="sectionLogo"><img alt="" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon__wb.png"/></div>
+<div class="sectionLogo"><img alt="" class="avatar" src="../_static/cobratoolbox/img/icon__wb.png"/></div>
 <div class="sectionTitle"><h3><a class="headerlink" href="#" title="Permalink to this headline">¶</a></h3></div>
 <div class="sectionContent"><ul class="simple">
 QWERTYtutorialTemplate.html
@@ -299,7 +300,7 @@ <h2>Reconstruction<a class="headerlink" href="#reconstruction" title="Permalink
 <div class="section" id="visualization">
 <h2>Visualization<a class="headerlink" href="#visualization" title="Permalink to this headline">¶</a></h2>
 <div class="tutorialSectionBox visualization">
-<div class="sectionLogo"><img alt="visualization" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_visualization_wb.png"/></div>
+<div class="sectionLogo"><img alt="visualization" class="avatar" src="../_static/cobratoolbox/img/icon_visualization_wb.png"/></div>
 <div class="sectionTitle"><h3>Visualization<a class="headerlink" href="#visualization" title="Permalink to this headline">¶</a></h3></div>
 <div class="sectionContent"><ul class="simple">
 QWERTYtutorialCellDesigner.html
@@ -414,7 +415,7 @@ <h2>Other<a class="headerlink" href="#other" title="Permalink to this headline">
 <div class="section" id="id4">
 <h2>Analysis<a class="headerlink" href="#id4" title="Permalink to this headline">¶</a></h2>
 <div class="tutorialSectionBox analysis">
-<div class="sectionLogo"><img alt="analysis" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_analysis_wb.png"/></div>
+<div class="sectionLogo"><img alt="analysis" class="avatar" src="../_static/cobratoolbox/img/icon_analysis_wb.png"/></div>
 <div class="sectionTitle"><h3>Analysis<a class="headerlink" href="#analysis" title="Permalink to this headline">¶</a></h3></div>
 <div class="sectionContent"><ul class="simple">
 QWERTYtutorialAtomicallyResolveReconstruction.html
@@ -467,7 +468,7 @@ <h2>Analysis<a class="headerlink" href="#id4" title="Permalink to this headline"
 <div class="section" id="id5">
 <h2>Base<a class="headerlink" href="#id5" title="Permalink to this headline">¶</a></h2>
 <div class="tutorialSectionBox base">
-<div class="sectionLogo"><img alt="base" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_base_wb.png"/></div>
+<div class="sectionLogo"><img alt="base" class="avatar" src="../_static/cobratoolbox/img/icon_base_wb.png"/></div>
 <div class="sectionTitle"><h3>Base<a class="headerlink" href="#base" title="Permalink to this headline">¶</a></h3></div>
 <div class="sectionContent"><ul class="simple">
 QWERTYtutorialContribute.html
@@ -488,7 +489,7 @@ <h2>Base<a class="headerlink" href="#id5" title="Permalink to this headline">¶<
 <div class="section" id="id6">
 <h2>Data integration<a class="headerlink" href="#id6" title="Permalink to this headline">¶</a></h2>
 <div class="tutorialSectionBox dataIntegration">
-<div class="sectionLogo"><img alt="dataIntegration" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_dataIntegration_wb.png"/></div>
+<div class="sectionLogo"><img alt="dataIntegration" class="avatar" src="../_static/cobratoolbox/img/icon_dataIntegration_wb.png"/></div>
 <div class="sectionTitle"><h3>Data integration<a class="headerlink" href="#dataIntegration" title="Permalink to this headline">¶</a></h3></div>
 <div class="sectionContent"><ul class="simple">
 QWERTYtutorialExtractionTranscriptomic.html
@@ -502,7 +503,7 @@ <h2>Data integration<a class="headerlink" href="#id6" title="Permalink to this h
 <div class="section" id="id7">
 <h2>Design<a class="headerlink" href="#id7" title="Permalink to this headline">¶</a></h2>
 <div class="tutorialSectionBox design">
-<div class="sectionLogo"><img alt="design" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_design_wb.png"/></div>
+<div class="sectionLogo"><img alt="design" class="avatar" src="../_static/cobratoolbox/img/icon_design_wb.png"/></div>
 <div class="sectionTitle"><h3>Design<a class="headerlink" href="#design" title="Permalink to this headline">¶</a></h3></div>
 <div class="sectionContent"><ul class="simple">
 QWERTYtutorialOptForceGAMS.html
@@ -516,7 +517,7 @@ <h2>Design<a class="headerlink" href="#id7" title="Permalink to this headline">
 <div class="section" id="id8">
 <h2>Reconstruction<a class="headerlink" href="#id8" title="Permalink to this headline">¶</a></h2>
 <div class="tutorialSectionBox reconstruction">
-<div class="sectionLogo"><img alt="reconstruction" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_reconstruction_wb.png"/></div>
+<div class="sectionLogo"><img alt="reconstruction" class="avatar" src="../_static/cobratoolbox/img/icon_reconstruction_wb.png"/></div>
 <div class="sectionTitle"><h3>Reconstruction<a class="headerlink" href="#reconstruction" title="Permalink to this headline">¶</a></h3></div>
 <div class="sectionContent"><ul class="simple">
 QWERTYtutorialCOBRAconcepts.html
@@ -549,7 +550,7 @@ <h2>Reconstruction<a class="headerlink" href="#id8" title="Permalink to this hea
 <li></li>
 </ul>
 <div class="tutorialSectionBox">
-<div class="sectionLogo"><img alt="" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon__wb.png"/></div>
+<div class="sectionLogo"><img alt="" class="avatar" src="../_static/cobratoolbox/img/icon__wb.png"/></div>
 <div class="sectionTitle"><h3><a class="headerlink" href="#" title="Permalink to this headline">¶</a></h3></div>
 <div class="sectionContent"><ul class="simple">
 QWERTYtutorialTemplate.html
@@ -560,7 +561,7 @@ <h2>Reconstruction<a class="headerlink" href="#id8" title="Permalink to this hea
 <div class="section" id="id9">
 <h2>Visualization<a class="headerlink" href="#id9" title="Permalink to this headline">¶</a></h2>
 <div class="tutorialSectionBox visualization">
-<div class="sectionLogo"><img alt="visualization" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_visualization_wb.png"/></div>
+<div class="sectionLogo"><img alt="visualization" class="avatar" src="../_static/cobratoolbox/img/icon_visualization_wb.png"/></div>
 <div class="sectionTitle"><h3>Visualization<a class="headerlink" href="#visualization" title="Permalink to this headline">¶</a></h3></div>
 <div class="sectionContent"><ul class="simple">
 QWERTYtutorialCellDesigner.html
diff --git a/stable/tutorials/createMeIntrcNetworkTutorial.html b/stable/tutorials/createMeIntrcNetworkTutorial.html
index ab00a5dfdb..f2f2237bda 100644
--- a/stable/tutorials/createMeIntrcNetworkTutorial.html
+++ b/stable/tutorials/createMeIntrcNetworkTutorial.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/visualization/createMetIntrcNetworkTutorial/createMetIntrcNetworkTutorial.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/visualization/createMetIntrcNetworkTutorial/createMetIntrcNetworkTutorial.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/createMetIntrcNetworkTutorial/createMetIntrcNetworkTutorial.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/createMetIntrcNetworkTutorial/createMetIntrcNetworkTutorial.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/visualization/createMetIntrcNetworkTutorial" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/index.html b/stable/tutorials/index.html
index fe24f362bf..e0d77a31e2 100644
--- a/stable/tutorials/index.html
+++ b/stable/tutorials/index.html
@@ -86,7 +86,7 @@ <h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
diff --git a/stable/tutorials/practica_COBRA_primer.html b/stable/tutorials/practica_COBRA_primer.html
index 2b178b1133..6924f7e6d5 100644
--- a/stable/tutorials/practica_COBRA_primer.html
+++ b/stable/tutorials/practica_COBRA_primer.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/base/primer/practical_COBRA_primer.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/base/primer/practical_COBRA_primer.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/primer/practical_COBRA_primer.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/primer/practical_COBRA_primer.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/base/primer" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
@@ -175,7 +176,7 @@ <h1>The COBRA Toolbox</h1>
 h1  {font-size:0px}
 </style>
 <div style="margin:-30px; margin-right:-30px;">
-<iframe frameborder="0" id="iFrameResizer0" scrolling="yes" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/base/primer/iframe_practical_COBRA_primer.html" style="overflow: visible; height: 228px;" width="100%"></iframe>
+<iframe frameborder="0" id="iFrameResizer0" scrolling="yes" src="../_static/cobratoolbox/tutorials/base/primer/iframe_practical_COBRA_primer.html" style="overflow: visible; height: 228px;" width="100%"></iframe>
 </div>
 <script src="../_static/js/iframeResizer.min.js" type="text/javascript"></script>
 <script type="text/javascript">
diff --git a/stable/tutorials/practica_FBA.html b/stable/tutorials/practica_FBA.html
index c97e32f7a9..7a132f8b11 100644
--- a/stable/tutorials/practica_FBA.html
+++ b/stable/tutorials/practica_FBA.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/FBA/practical_FBA.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/FBA/practical_FBA.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/FBA/practical_FBA.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/FBA/practical_FBA.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/FBA" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
@@ -175,7 +176,7 @@ <h1>The COBRA Toolbox</h1>
 h1  {font-size:0px}
 </style>
 <div style="margin:-30px; margin-right:-30px;">
-<iframe frameborder="0" id="iFrameResizer0" scrolling="yes" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/FBA/iframe_practical_FBA.html" style="overflow: visible; height: 228px;" width="100%"></iframe>
+<iframe frameborder="0" id="iFrameResizer0" scrolling="yes" src="../_static/cobratoolbox/tutorials/analysis/FBA/iframe_practical_FBA.html" style="overflow: visible; height: 228px;" width="100%"></iframe>
 </div>
 <script src="../_static/js/iframeResizer.min.js" type="text/javascript"></script>
 <script type="text/javascript">
diff --git a/stable/tutorials/practica_alternateOptimalSolutions.html b/stable/tutorials/practica_alternateOptimalSolutions.html
index 2cc308c18d..4b537538fd 100644
--- a/stable/tutorials/practica_alternateOptimalSolutions.html
+++ b/stable/tutorials/practica_alternateOptimalSolutions.html
@@ -98,7 +98,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -129,6 +129,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -156,36 +157,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/alternateOptimalSolutions/practical_alternateOptimalSolutions.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/alternateOptimalSolutions/practical_alternateOptimalSolutions.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/alternateOptimalSolutions/practical_alternateOptimalSolutions.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/alternateOptimalSolutions/practical_alternateOptimalSolutions.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/alternateOptimalSolutions" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/practica_sensitivityAnalysis.html b/stable/tutorials/practica_sensitivityAnalysis.html
index 22f4a20279..f8d7f8f44b 100644
--- a/stable/tutorials/practica_sensitivityAnalysis.html
+++ b/stable/tutorials/practica_sensitivityAnalysis.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/sensitivityAnalysis/practical_sensitivityAnalysis.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/sensitivityAnalysis/practical_sensitivityAnalysis.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/sensitivityAnalysis/practical_sensitivityAnalysis.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/sensitivityAnalysis/practical_sensitivityAnalysis.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/sensitivityAnalysis" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
@@ -175,7 +176,7 @@ <h1>The COBRA Toolbox</h1>
 h1  {font-size:0px}
 </style>
 <div style="margin:-30px; margin-right:-30px;">
-<iframe frameborder="0" id="iFrameResizer0" scrolling="yes" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/sensitivityAnalysis/iframe_practical_sensitivityAnalysis.html" style="overflow: visible; height: 228px;" width="100%"></iframe>
+<iframe frameborder="0" id="iFrameResizer0" scrolling="yes" src="../_static/cobratoolbox/tutorials/analysis/sensitivityAnalysis/iframe_practical_sensitivityAnalysis.html" style="overflow: visible; height: 228px;" width="100%"></iframe>
 </div>
 <script src="../_static/js/iframeResizer.min.js" type="text/javascript"></script>
 <script type="text/javascript">
diff --git a/stable/tutorials/tutorialAdditionalConstraintsAndVariables.html b/stable/tutorials/tutorialAdditionalConstraintsAndVariables.html
index 14873cf4dd..c50ab007f8 100644
--- a/stable/tutorials/tutorialAdditionalConstraintsAndVariables.html
+++ b/stable/tutorials/tutorialAdditionalConstraintsAndVariables.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/constrainingModels" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialAlternateOptimalSolutions.html b/stable/tutorials/tutorialAlternateOptimalSolutions.html
index 0e919c9771..622ef90441 100644
--- a/stable/tutorials/tutorialAlternateOptimalSolutions.html
+++ b/stable/tutorials/tutorialAlternateOptimalSolutions.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/alternateOptimalSolutions/tutorial_alternateOptimalSolutions.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/alternateOptimalSolutions/tutorial_alternateOptimalSolutions.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/alternateOptimalSolutions/tutorial_alternateOptimalSolutions.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/alternateOptimalSolutions/tutorial_alternateOptimalSolutions.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/alternateOptimalSolutions" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialAnalyseCombinedModel.html b/stable/tutorials/tutorialAnalyseCombinedModel.html
index daf043367f..6edea59041 100644
--- a/stable/tutorials/tutorialAnalyseCombinedModel.html
+++ b/stable/tutorials/tutorialAnalyseCombinedModel.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/vonBertalanffy/combinedModel/tutorial_analyseCombinedModel.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/vonBertalanffy/combinedModel/tutorial_analyseCombinedModel.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/vonBertalanffy/combinedModel/tutorial_analyseCombinedModel.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/vonBertalanffy/combinedModel/tutorial_analyseCombinedModel.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/vonBertalanffy/combinedModel" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialAnalyseComponentContribution.html b/stable/tutorials/tutorialAnalyseComponentContribution.html
index 71936f6d71..05379624db 100644
--- a/stable/tutorials/tutorialAnalyseComponentContribution.html
+++ b/stable/tutorials/tutorialAnalyseComponentContribution.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/vonBertalanffy/componentContribution/tutorial_analyseComponentContribution.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/vonBertalanffy/componentContribution/tutorial_analyseComponentContribution.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/vonBertalanffy/componentContribution/tutorial_analyseComponentContribution.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/vonBertalanffy/componentContribution/tutorial_analyseComponentContribution.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/vonBertalanffy/componentContribution" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialAnalyseConservedMoieties.html b/stable/tutorials/tutorialAnalyseConservedMoieties.html
index f7b05694f7..9b39fe4f80 100644
--- a/stable/tutorials/tutorialAnalyseConservedMoieties.html
+++ b/stable/tutorials/tutorialAnalyseConservedMoieties.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/conservedMoieties/tutorial_analyseConservedMoieties.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/conservedMoieties/tutorial_analyseConservedMoieties.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/conservedMoieties/tutorial_analyseConservedMoieties.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/conservedMoieties/tutorial_analyseConservedMoieties.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/conservedMoieties" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialAtomicallyResolveReconstruction.html b/stable/tutorials/tutorialAtomicallyResolveReconstruction.html
index 059767be59..8ea17df1a0 100644
--- a/stable/tutorials/tutorialAtomicallyResolveReconstruction.html
+++ b/stable/tutorials/tutorialAtomicallyResolveReconstruction.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/atomicallyResolveReconstruction/old/tutorial_atomicallyResolveReconstruction.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/atomicallyResolveReconstruction/old/tutorial_atomicallyResolveReconstruction.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/atomicallyResolveReconstruction/old/tutorial_atomicallyResolveReconstruction.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/atomicallyResolveReconstruction/old/tutorial_atomicallyResolveReconstruction.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/atomicallyResolveReconstruction/old" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialBrowseNetwork.html b/stable/tutorials/tutorialBrowseNetwork.html
index cee5d0d8d4..dcc9f52a1d 100644
--- a/stable/tutorials/tutorialBrowseNetwork.html
+++ b/stable/tutorials/tutorialBrowseNetwork.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/browseNetwork/tutorial_browseNetwork.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/browseNetwork/tutorial_browseNetwork.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/browseNetwork/tutorial_browseNetwork.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/browseNetwork/tutorial_browseNetwork.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/browseNetwork" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialBuildAtomTransitionMultigraph.html b/stable/tutorials/tutorialBuildAtomTransitionMultigraph.html
index fef46dc397..0d98a9a07c 100644
--- a/stable/tutorials/tutorialBuildAtomTransitionMultigraph.html
+++ b/stable/tutorials/tutorialBuildAtomTransitionMultigraph.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/conservedMoieties/tutorial_buildAtomTransitionMultigraph.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/conservedMoieties/tutorial_buildAtomTransitionMultigraph.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/conservedMoieties/tutorial_buildAtomTransitionMultigraph.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/conservedMoieties/tutorial_buildAtomTransitionMultigraph.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/conservedMoieties" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialCOBRA_Toolbox_intro.html b/stable/tutorials/tutorialCOBRA_Toolbox_intro.html
index 6095e4daec..b2203d1851 100644
--- a/stable/tutorials/tutorialCOBRA_Toolbox_intro.html
+++ b/stable/tutorials/tutorialCOBRA_Toolbox_intro.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/base/intro/tutorial_COBRA_Toolbox_intro.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/base/intro/tutorial_COBRA_Toolbox_intro.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/intro/tutorial_COBRA_Toolbox_intro.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/intro/tutorial_COBRA_Toolbox_intro.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/base/intro" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialCOBRA_primer.html b/stable/tutorials/tutorialCOBRA_primer.html
index f4f73cbbba..3deda1fe32 100644
--- a/stable/tutorials/tutorialCOBRA_primer.html
+++ b/stable/tutorials/tutorialCOBRA_primer.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/base/primer/tutorial_COBRA_primer.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/base/primer/tutorial_COBRA_primer.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/primer/tutorial_COBRA_primer.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/primer/tutorial_COBRA_primer.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/base/primer" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialCOBRA_primer_2.html b/stable/tutorials/tutorialCOBRA_primer_2.html
index 3eff861701..d14e4a19df 100644
--- a/stable/tutorials/tutorialCOBRA_primer_2.html
+++ b/stable/tutorials/tutorialCOBRA_primer_2.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/base/primer/tutorial_COBRA_primer_2.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/base/primer/tutorial_COBRA_primer_2.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/primer/tutorial_COBRA_primer_2.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/primer/tutorial_COBRA_primer_2.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/base/primer" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialCOBRAconcepts.html b/stable/tutorials/tutorialCOBRAconcepts.html
index d3ba9658d9..45027d07e4 100644
--- a/stable/tutorials/tutorialCOBRAconcepts.html
+++ b/stable/tutorials/tutorialCOBRAconcepts.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/COBRAconcepts/tutorial_COBRAconcepts.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/COBRAconcepts/tutorial_COBRAconcepts.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/COBRAconcepts/tutorial_COBRAconcepts.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/COBRAconcepts/tutorial_COBRAconcepts.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/COBRAconcepts" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialCellDesigner.html b/stable/tutorials/tutorialCellDesigner.html
index 32aeb7aeb2..0036ec3a79 100644
--- a/stable/tutorials/tutorialCellDesigner.html
+++ b/stable/tutorials/tutorialCellDesigner.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/visualization/cellDesigner/tutorial_cellDesigner.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/visualization/cellDesigner/tutorial_cellDesigner.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/cellDesigner/tutorial_cellDesigner.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/cellDesigner/tutorial_cellDesigner.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/visualization/cellDesigner" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialConstrainingModels.html b/stable/tutorials/tutorialConstrainingModels.html
index 6ba7cd0609..4f69dcf2cb 100644
--- a/stable/tutorials/tutorialConstrainingModels.html
+++ b/stable/tutorials/tutorialConstrainingModels.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/constrainingModels/tutorial_constrainingModels.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/constrainingModels/tutorial_constrainingModels.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_constrainingModels.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_constrainingModels.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/constrainingModels" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialContribute.html b/stable/tutorials/tutorialContribute.html
index e3fd9957b0..accdb1ffb4 100644
--- a/stable/tutorials/tutorialContribute.html
+++ b/stable/tutorials/tutorialContribute.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/base/contribute/tutorial_contribute.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/base/contribute/tutorial_contribute.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/contribute/tutorial_contribute.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/contribute/tutorial_contribute.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/base/contribute" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialCreateSubnetworkRecon.html b/stable/tutorials/tutorialCreateSubnetworkRecon.html
index d800277ef2..f85bc39e4e 100644
--- a/stable/tutorials/tutorialCreateSubnetworkRecon.html
+++ b/stable/tutorials/tutorialCreateSubnetworkRecon.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/createSubnetworkRecon/tutorial_createSubnetworkRecon.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/createSubnetworkRecon/tutorial_createSubnetworkRecon.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/createSubnetworkRecon/tutorial_createSubnetworkRecon.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/createSubnetworkRecon/tutorial_createSubnetworkRecon.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/createSubnetworkRecon" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialDemeter.html b/stable/tutorials/tutorialDemeter.html
index 78ba3e83dc..91264cebd8 100644
--- a/stable/tutorials/tutorialDemeter.html
+++ b/stable/tutorials/tutorialDemeter.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/demeter/tutorial_demeter.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/demeter/tutorial_demeter.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/demeter/tutorial_demeter.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/demeter/tutorial_demeter.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/demeter" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialEcoliCoreModel_part1.html b/stable/tutorials/tutorialEcoliCoreModel_part1.html
index 3ad70fdf30..d3ae5f68a7 100644
--- a/stable/tutorials/tutorialEcoliCoreModel_part1.html
+++ b/stable/tutorials/tutorialEcoliCoreModel_part1.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/ecoliCoreModel/part1/tutorial_ecoliCoreModel_part1.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/ecoliCoreModel/part1/tutorial_ecoliCoreModel_part1.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/ecoliCoreModel/part1/tutorial_ecoliCoreModel_part1.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/ecoliCoreModel/part1/tutorial_ecoliCoreModel_part1.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/ecoliCoreModel/part1" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialEcoliCoreModel_part2.html b/stable/tutorials/tutorialEcoliCoreModel_part2.html
index e853926da8..b14bb60873 100644
--- a/stable/tutorials/tutorialEcoliCoreModel_part2.html
+++ b/stable/tutorials/tutorialEcoliCoreModel_part2.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/ecoliCoreModel/part2/tutorial_ecoliCoreModel_part2.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/ecoliCoreModel/part2/tutorial_ecoliCoreModel_part2.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/ecoliCoreModel/part2/tutorial_ecoliCoreModel_part2.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/ecoliCoreModel/part2/tutorial_ecoliCoreModel_part2.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/ecoliCoreModel/part2" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialEcoliCoreModel_part3.html b/stable/tutorials/tutorialEcoliCoreModel_part3.html
index 117d6b42e0..ecfcba740f 100644
--- a/stable/tutorials/tutorialEcoliCoreModel_part3.html
+++ b/stable/tutorials/tutorialEcoliCoreModel_part3.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/ecoliCoreModel/part3/tutorial_ecoliCoreModel_part3.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/ecoliCoreModel/part3/tutorial_ecoliCoreModel_part3.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/ecoliCoreModel/part3/tutorial_ecoliCoreModel_part3.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/ecoliCoreModel/part3/tutorial_ecoliCoreModel_part3.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/ecoliCoreModel/part3" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialEfmviz_ecoli.html b/stable/tutorials/tutorialEfmviz_ecoli.html
index b9f1baada5..c7541511ff 100644
--- a/stable/tutorials/tutorialEfmviz_ecoli.html
+++ b/stable/tutorials/tutorialEfmviz_ecoli.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/visualization/EFMviz/tutorial_Efmviz_ecoli.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/visualization/EFMviz/tutorial_Efmviz_ecoli.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/EFMviz/tutorial_Efmviz_ecoli.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/EFMviz/tutorial_Efmviz_ecoli.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/visualization/EFMviz" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialEfmviz_recon.html b/stable/tutorials/tutorialEfmviz_recon.html
index c3c7847f67..0d080c3f11 100644
--- a/stable/tutorials/tutorialEfmviz_recon.html
+++ b/stable/tutorials/tutorialEfmviz_recon.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/visualization/EFMviz/tutorial_Efmviz_recon.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/visualization/EFMviz/tutorial_Efmviz_recon.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/EFMviz/tutorial_Efmviz_recon.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/EFMviz/tutorial_Efmviz_recon.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/visualization/EFMviz" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialEngaging.html b/stable/tutorials/tutorialEngaging.html
index 03f7ce3987..50dfb97dff 100644
--- a/stable/tutorials/tutorialEngaging.html
+++ b/stable/tutorials/tutorialEngaging.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/base/engagingWithTheCommunity/tutorial_engaging.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/base/engagingWithTheCommunity/tutorial_engaging.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/engagingWithTheCommunity/tutorial_engaging.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/engagingWithTheCommunity/tutorial_engaging.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/base/engagingWithTheCommunity" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialEssentialRxns4MultipleModels.html b/stable/tutorials/tutorialEssentialRxns4MultipleModels.html
index ae9667293b..d8bf89ac85 100644
--- a/stable/tutorials/tutorialEssentialRxns4MultipleModels.html
+++ b/stable/tutorials/tutorialEssentialRxns4MultipleModels.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/essentialRxns4MultipleModels/tutorial_essentialRxns4MultipleModels.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/essentialRxns4MultipleModels/tutorial_essentialRxns4MultipleModels.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/essentialRxns4MultipleModels/tutorial_essentialRxns4MultipleModels.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/essentialRxns4MultipleModels/tutorial_essentialRxns4MultipleModels.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/essentialRxns4MultipleModels" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialExtractionTranscriptomic.html b/stable/tutorials/tutorialExtractionTranscriptomic.html
index 92eba4961a..561c49683e 100644
--- a/stable/tutorials/tutorialExtractionTranscriptomic.html
+++ b/stable/tutorials/tutorialExtractionTranscriptomic.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/dataIntegration/extractionTranscriptomic/tutorial_extractionTranscriptomic.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/dataIntegration/extractionTranscriptomic/tutorial_extractionTranscriptomic.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/dataIntegration/extractionTranscriptomic/tutorial_extractionTranscriptomic.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/dataIntegration/extractionTranscriptomic/tutorial_extractionTranscriptomic.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/dataIntegration/extractionTranscriptomic" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialFBA.html b/stable/tutorials/tutorialFBA.html
index cff3596b0d..2596df572e 100644
--- a/stable/tutorials/tutorialFBA.html
+++ b/stable/tutorials/tutorialFBA.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/FBA/tutorial_FBA.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/FBA/tutorial_FBA.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/FBA/tutorial_FBA.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/FBA/tutorial_FBA.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/FBA" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialFBA_variants.html b/stable/tutorials/tutorialFBA_variants.html
index 81ff63a4a1..51c4e80358 100644
--- a/stable/tutorials/tutorialFBA_variants.html
+++ b/stable/tutorials/tutorialFBA_variants.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/FBA_variants/tutorial_FBA_variants.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/FBA_variants/tutorial_FBA_variants.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/FBA_variants/tutorial_FBA_variants.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/FBA_variants/tutorial_FBA_variants.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/FBA_variants" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialFVA.html b/stable/tutorials/tutorialFVA.html
index ff16e95022..7e9dc173ee 100644
--- a/stable/tutorials/tutorialFVA.html
+++ b/stable/tutorials/tutorialFVA.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/FVA/tutorial_FVA.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/FVA/tutorial_FVA.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/FVA/tutorial_FVA.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/FVA/tutorial_FVA.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/FVA" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialFastGapFill.html b/stable/tutorials/tutorialFastGapFill.html
index bef8c52c6a..4df3737473 100644
--- a/stable/tutorials/tutorialFastGapFill.html
+++ b/stable/tutorials/tutorialFastGapFill.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/fastGapFill/tutorial_fastGapFill.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/fastGapFill/tutorial_fastGapFill.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/fastGapFill/tutorial_fastGapFill.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/fastGapFill/tutorial_fastGapFill.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/fastGapFill" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialFidelityTesting.html b/stable/tutorials/tutorialFidelityTesting.html
index 026a40e0a4..9c8888d567 100644
--- a/stable/tutorials/tutorialFidelityTesting.html
+++ b/stable/tutorials/tutorialFidelityTesting.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/fidelityTesting/tutorial_fidelityTesting.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/fidelityTesting/tutorial_fidelityTesting.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/fidelityTesting/tutorial_fidelityTesting.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/fidelityTesting/tutorial_fidelityTesting.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/fidelityTesting" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialGMCS.html b/stable/tutorials/tutorialGMCS.html
index 968bdbc7f4..9645085586 100644
--- a/stable/tutorials/tutorialGMCS.html
+++ b/stable/tutorials/tutorialGMCS.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/gMCS/tutorial_gMCS.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/gMCS/tutorial_gMCS.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/gMCS/tutorial_gMCS.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/gMCS/tutorial_gMCS.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/gMCS" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialGeneKO.html b/stable/tutorials/tutorialGeneKO.html
index e4218f0fe4..d956b584f2 100644
--- a/stable/tutorials/tutorialGeneKO.html
+++ b/stable/tutorials/tutorialGeneKO.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/geneKO/tutorial_geneKO.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/geneKO/tutorial_geneKO.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/geneKO/tutorial_geneKO.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/geneKO/tutorial_geneKO.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/geneKO" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialHostMicrobeInteractions.html b/stable/tutorials/tutorialHostMicrobeInteractions.html
index 616b1e47bc..e7e163ddf7 100644
--- a/stable/tutorials/tutorialHostMicrobeInteractions.html
+++ b/stable/tutorials/tutorialHostMicrobeInteractions.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/hostMicrobeInteractions/tutorial_hostMicrobeInteractions.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/hostMicrobeInteractions/tutorial_hostMicrobeInteractions.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/hostMicrobeInteractions/tutorial_hostMicrobeInteractions.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/hostMicrobeInteractions/tutorial_hostMicrobeInteractions.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/hostMicrobeInteractions" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialIO.html b/stable/tutorials/tutorialIO.html
index 1b0b6659c5..3a181db9c1 100644
--- a/stable/tutorials/tutorialIO.html
+++ b/stable/tutorials/tutorialIO.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/base/IO/tutorial_IO.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/base/IO/tutorial_IO.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/IO/tutorial_IO.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/IO/tutorial_IO.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/base/IO" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialIdentifyConservedMoieties.html b/stable/tutorials/tutorialIdentifyConservedMoieties.html
index 614c8e8652..22727aed6b 100644
--- a/stable/tutorials/tutorialIdentifyConservedMoieties.html
+++ b/stable/tutorials/tutorialIdentifyConservedMoieties.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/conservedMoieties/tutorial_identifyConservedMoieties.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/conservedMoieties/tutorial_identifyConservedMoieties.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/conservedMoieties/tutorial_identifyConservedMoieties.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/conservedMoieties/tutorial_identifyConservedMoieties.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/conservedMoieties" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialInitConservedMoietyPaths.html b/stable/tutorials/tutorialInitConservedMoietyPaths.html
index 68415c9918..ca91309d6b 100644
--- a/stable/tutorials/tutorialInitConservedMoietyPaths.html
+++ b/stable/tutorials/tutorialInitConservedMoietyPaths.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/conservedMoieties/tutorial_initConservedMoietyPaths.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/conservedMoieties/tutorial_initConservedMoietyPaths.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/conservedMoieties/tutorial_initConservedMoietyPaths.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/conservedMoieties/tutorial_initConservedMoietyPaths.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/conservedMoieties" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialInitialize.html b/stable/tutorials/tutorialInitialize.html
index 3a6f91518f..eafa80d733 100644
--- a/stable/tutorials/tutorialInitialize.html
+++ b/stable/tutorials/tutorialInitialize.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/base/initialize/tutorial_initialize.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/base/initialize/tutorial_initialize.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/initialize/tutorial_initialize.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/initialize/tutorial_initialize.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/base/initialize" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialInitializeAndVerify.html b/stable/tutorials/tutorialInitializeAndVerify.html
index cdde6fd2c0..1edab8ec42 100644
--- a/stable/tutorials/tutorialInitializeAndVerify.html
+++ b/stable/tutorials/tutorialInitializeAndVerify.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/base/initializeAndVerify/tutorial_initializeAndVerify.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/base/initializeAndVerify/tutorial_initializeAndVerify.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/initializeAndVerify/tutorial_initializeAndVerify.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/initializeAndVerify/tutorial_initializeAndVerify.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/base/initializeAndVerify" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialLeakSiphonModes.html b/stable/tutorials/tutorialLeakSiphonModes.html
index aaccb68b73..814e3b2618 100644
--- a/stable/tutorials/tutorialLeakSiphonModes.html
+++ b/stable/tutorials/tutorialLeakSiphonModes.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/leakSiphonModes/tutorial_leakSiphonModes.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/leakSiphonModes/tutorial_leakSiphonModes.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/leakSiphonModes/tutorial_leakSiphonModes.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/leakSiphonModes/tutorial_leakSiphonModes.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/leakSiphonModes" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialMATLAB_intro.html b/stable/tutorials/tutorialMATLAB_intro.html
index 7a93cfc65a..2f83b0f92b 100644
--- a/stable/tutorials/tutorialMATLAB_intro.html
+++ b/stable/tutorials/tutorialMATLAB_intro.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/base/intro/tutorial_MATLAB_intro.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/base/intro/tutorial_MATLAB_intro.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/intro/tutorial_MATLAB_intro.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/intro/tutorial_MATLAB_intro.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/base/intro" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialMetabolicCartography_part1.html b/stable/tutorials/tutorialMetabolicCartography_part1.html
index ede7001bf3..62399dbd33 100644
--- a/stable/tutorials/tutorialMetabolicCartography_part1.html
+++ b/stable/tutorials/tutorialMetabolicCartography_part1.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/visualization/metabolicCartography/tutorial_metabolicCartography_part1.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/visualization/metabolicCartography/tutorial_metabolicCartography_part1.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/metabolicCartography/tutorial_metabolicCartography_part1.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/metabolicCartography/tutorial_metabolicCartography_part1.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/visualization/metabolicCartography" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialMetabolicCartography_part2.html b/stable/tutorials/tutorialMetabolicCartography_part2.html
index 44dcfe7306..07d14afd2c 100644
--- a/stable/tutorials/tutorialMetabolicCartography_part2.html
+++ b/stable/tutorials/tutorialMetabolicCartography_part2.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/visualization/metabolicCartography/tutorial_metabolicCartography_part2.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/visualization/metabolicCartography/tutorial_metabolicCartography_part2.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/metabolicCartography/tutorial_metabolicCartography_part2.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/metabolicCartography/tutorial_metabolicCartography_part2.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/visualization/metabolicCartography" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialMetabolicCartogrphy_part3.html b/stable/tutorials/tutorialMetabolicCartogrphy_part3.html
index ab46a29df5..1c789fbf98 100644
--- a/stable/tutorials/tutorialMetabolicCartogrphy_part3.html
+++ b/stable/tutorials/tutorialMetabolicCartogrphy_part3.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/visualization/metabolicCartography/tutorial_metabolicCartogrphy_part3.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/visualization/metabolicCartography/tutorial_metabolicCartogrphy_part3.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/metabolicCartography/tutorial_metabolicCartogrphy_part3.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/metabolicCartography/tutorial_metabolicCartogrphy_part3.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/visualization/metabolicCartography" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialMetabotoolsI.html b/stable/tutorials/tutorialMetabotoolsI.html
index 95b0e9d9ed..6ad6a4eeae 100644
--- a/stable/tutorials/tutorialMetabotoolsI.html
+++ b/stable/tutorials/tutorialMetabotoolsI.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/dataIntegration/metabotools/tutorial_I/tutorial_metabotoolsI.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/dataIntegration/metabotools/tutorial_I/tutorial_metabotoolsI.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/dataIntegration/metabotools/tutorial_I/tutorial_metabotoolsI.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/dataIntegration/metabotools/tutorial_I/tutorial_metabotoolsI.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/dataIntegration/metabotools/tutorial_I" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialMetabotoolsII.html b/stable/tutorials/tutorialMetabotoolsII.html
index 12dc090320..4bba339be9 100644
--- a/stable/tutorials/tutorialMetabotoolsII.html
+++ b/stable/tutorials/tutorialMetabotoolsII.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/dataIntegration/metabotools/tutorial_II/tutorial_metabotoolsII.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/dataIntegration/metabotools/tutorial_II/tutorial_metabotoolsII.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/dataIntegration/metabotools/tutorial_II/tutorial_metabotoolsII.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/dataIntegration/metabotools/tutorial_II/tutorial_metabotoolsII.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/dataIntegration/metabotools/tutorial_II" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialMgPipe.html b/stable/tutorials/tutorialMgPipe.html
index 54c1e63c39..d68d2efe53 100644
--- a/stable/tutorials/tutorialMgPipe.html
+++ b/stable/tutorials/tutorialMgPipe.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/microbiomeModelingToolbox/tutorial_mgPipe.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/microbiomeModelingToolbox/tutorial_mgPipe.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/microbiomeModelingToolbox/tutorial_mgPipe.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/microbiomeModelingToolbox/tutorial_mgPipe.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/microbiomeModelingToolbox" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialMicrobeMicrobeInteractions.html b/stable/tutorials/tutorialMicrobeMicrobeInteractions.html
index b05fe47119..4dc4940a10 100644
--- a/stable/tutorials/tutorialMicrobeMicrobeInteractions.html
+++ b/stable/tutorials/tutorialMicrobeMicrobeInteractions.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/microbeMicrobeInteractions/tutorial_microbeMicrobeInteractions.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/microbeMicrobeInteractions/tutorial_microbeMicrobeInteractions.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/microbeMicrobeInteractions/tutorial_microbeMicrobeInteractions.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/microbeMicrobeInteractions/tutorial_microbeMicrobeInteractions.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/microbeMicrobeInteractions" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialMinSpan.html b/stable/tutorials/tutorialMinSpan.html
index 100ed51fe1..b96d00f6d7 100644
--- a/stable/tutorials/tutorialMinSpan.html
+++ b/stable/tutorials/tutorialMinSpan.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/minSpan/tutorial_minSpan.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/minSpan/tutorial_minSpan.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/minSpan/tutorial_minSpan.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/minSpan/tutorial_minSpan.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/minSpan" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialModelATPYield.html b/stable/tutorials/tutorialModelATPYield.html
index 57b40624b0..a8a049ed74 100644
--- a/stable/tutorials/tutorialModelATPYield.html
+++ b/stable/tutorials/tutorialModelATPYield.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/modelATPYield/tutorial_modelATPYield.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/modelATPYield/tutorial_modelATPYield.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/modelATPYield/tutorial_modelATPYield.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/modelATPYield/tutorial_modelATPYield.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/modelATPYield" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialModelBorgifier.html b/stable/tutorials/tutorialModelBorgifier.html
index c1a3101ce3..396d935a04 100644
--- a/stable/tutorials/tutorialModelBorgifier.html
+++ b/stable/tutorials/tutorialModelBorgifier.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/modelBorgifier/tutorial_modelBorgifier.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/modelBorgifier/tutorial_modelBorgifier.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/modelBorgifier/tutorial_modelBorgifier.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/modelBorgifier/tutorial_modelBorgifier.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/modelBorgifier" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialModelCreation.html b/stable/tutorials/tutorialModelCreation.html
index b16291adb8..b99cb03f78 100644
--- a/stable/tutorials/tutorialModelCreation.html
+++ b/stable/tutorials/tutorialModelCreation.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/modelCreation/tutorial_modelCreation.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/modelCreation/tutorial_modelCreation.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/modelCreation/tutorial_modelCreation.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/modelCreation/tutorial_modelCreation.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/modelCreation" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialModelManipulation.html b/stable/tutorials/tutorialModelManipulation.html
index 619037eb72..ee887115d8 100644
--- a/stable/tutorials/tutorialModelManipulation.html
+++ b/stable/tutorials/tutorialModelManipulation.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/modelManipulation/tutorial_modelManipulation.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/modelManipulation/tutorial_modelManipulation.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/modelManipulation/tutorial_modelManipulation.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/modelManipulation/tutorial_modelManipulation.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/modelManipulation" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialModelProperties.html b/stable/tutorials/tutorialModelProperties.html
index 9b126a050c..55f93a6941 100644
--- a/stable/tutorials/tutorialModelProperties.html
+++ b/stable/tutorials/tutorialModelProperties.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/modelProperties/tutorial_modelProperties.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/modelProperties/tutorial_modelProperties.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/modelProperties/tutorial_modelProperties.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/modelProperties/tutorial_modelProperties.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/modelProperties" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialModelSanityChecks.html b/stable/tutorials/tutorialModelSanityChecks.html
index 8824cb1df5..c38a75c2e0 100644
--- a/stable/tutorials/tutorialModelSanityChecks.html
+++ b/stable/tutorials/tutorialModelSanityChecks.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/modelSanityChecks/tutorial_modelSanityChecks.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/modelSanityChecks/tutorial_modelSanityChecks.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/modelSanityChecks/tutorial_modelSanityChecks.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/modelSanityChecks/tutorial_modelSanityChecks.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/modelSanityChecks" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialNumCharact.html b/stable/tutorials/tutorialNumCharact.html
index 1059c4aed7..0c3b0f0589 100644
--- a/stable/tutorials/tutorialNumCharact.html
+++ b/stable/tutorials/tutorialNumCharact.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/numCharact/tutorial_numCharact.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/numCharact/tutorial_numCharact.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/numCharact/tutorial_numCharact.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/numCharact/tutorial_numCharact.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/numCharact" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialOptForce.html b/stable/tutorials/tutorialOptForce.html
index fe48707753..3598125d9a 100644
--- a/stable/tutorials/tutorialOptForce.html
+++ b/stable/tutorials/tutorialOptForce.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/design/optForce/tutorial_optForce.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/design/optForce/tutorial_optForce.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/design/optForce/tutorial_optForce.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/design/optForce/tutorial_optForce.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/design/optForce" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialOptForceGAMS.html b/stable/tutorials/tutorialOptForceGAMS.html
index b530d41331..879fd1cb9a 100644
--- a/stable/tutorials/tutorialOptForceGAMS.html
+++ b/stable/tutorials/tutorialOptForceGAMS.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/design/optForceGAMS/tutorial_optForceGAMS.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/design/optForceGAMS/tutorial_optForceGAMS.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/design/optForceGAMS/tutorial_optForceGAMS.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/design/optForceGAMS/tutorial_optForceGAMS.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/design/optForceGAMS" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialOptGene.html b/stable/tutorials/tutorialOptGene.html
index 916b0e534c..fe307a1bb5 100644
--- a/stable/tutorials/tutorialOptGene.html
+++ b/stable/tutorials/tutorialOptGene.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/design/optGene/tutorial_optGene.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/design/optGene/tutorial_optGene.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/design/optGene/tutorial_optGene.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/design/optGene/tutorial_optGene.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/design/optGene" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialOptKnock.html b/stable/tutorials/tutorialOptKnock.html
index 4a9c4ddc40..4e2d3f93af 100644
--- a/stable/tutorials/tutorialOptKnock.html
+++ b/stable/tutorials/tutorialOptKnock.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/design/optKnock/tutorial_optKnock.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/design/optKnock/tutorial_optKnock.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/design/optKnock/tutorial_optKnock.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/design/optKnock/tutorial_optKnock.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/design/optKnock" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialPFBA.html b/stable/tutorials/tutorialPFBA.html
index 24bf865e34..bfe7f769c4 100644
--- a/stable/tutorials/tutorialPFBA.html
+++ b/stable/tutorials/tutorialPFBA.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/pFBA/tutorial_pFBA.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/pFBA/tutorial_pFBA.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/pFBA/tutorial_pFBA.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/pFBA/tutorial_pFBA.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/pFBA" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialPaint4net.html b/stable/tutorials/tutorialPaint4net.html
index b2f6326baf..3a251d4787 100644
--- a/stable/tutorials/tutorialPaint4net.html
+++ b/stable/tutorials/tutorialPaint4net.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/visualization/paint4Net/tutorial_paint4net.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/visualization/paint4Net/tutorial_paint4net.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/paint4Net/tutorial_paint4net.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/paint4Net/tutorial_paint4net.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/visualization/paint4Net" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialQuadPrecisionFBA.html b/stable/tutorials/tutorialQuadPrecisionFBA.html
index 0ea8408cb8..251fa4c809 100644
--- a/stable/tutorials/tutorialQuadPrecisionFBA.html
+++ b/stable/tutorials/tutorialQuadPrecisionFBA.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/quadPrecisionFBA/tutorial_quadPrecisionFBA.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/quadPrecisionFBA/tutorial_quadPrecisionFBA.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/quadPrecisionFBA/tutorial_quadPrecisionFBA.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/quadPrecisionFBA/tutorial_quadPrecisionFBA.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/quadPrecisionFBA" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialRBioNet.html b/stable/tutorials/tutorialRBioNet.html
index 415d9fc930..f8889c22ce 100644
--- a/stable/tutorials/tutorialRBioNet.html
+++ b/stable/tutorials/tutorialRBioNet.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/rBioNet/tutorial_rBioNet.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/rBioNet/tutorial_rBioNet.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/rBioNet/tutorial_rBioNet.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/rBioNet/tutorial_rBioNet.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/rBioNet" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialRMTA.html b/stable/tutorials/tutorialRMTA.html
index 5b9d83af2d..3ca91a6ef7 100644
--- a/stable/tutorials/tutorialRMTA.html
+++ b/stable/tutorials/tutorialRMTA.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/rMTA/tutorial_rMTA.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/rMTA/tutorial_rMTA.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/rMTA/tutorial_rMTA.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/rMTA/tutorial_rMTA.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/rMTA" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialReconToFBAmodel.html b/stable/tutorials/tutorialReconToFBAmodel.html
index 0b8e28b1a3..f1995784e0 100644
--- a/stable/tutorials/tutorialReconToFBAmodel.html
+++ b/stable/tutorials/tutorialReconToFBAmodel.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/recon2FBAmodel/tutorial_reconToFBAmodel.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/recon2FBAmodel/tutorial_reconToFBAmodel.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/recon2FBAmodel/tutorial_reconToFBAmodel.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/recon2FBAmodel/tutorial_reconToFBAmodel.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/recon2FBAmodel" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialReconToFBAmodel2.html b/stable/tutorials/tutorialReconToFBAmodel2.html
index 431d1278eb..83abceaba8 100644
--- a/stable/tutorials/tutorialReconToFBAmodel2.html
+++ b/stable/tutorials/tutorialReconToFBAmodel2.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/recon2FBAmodel/tutorial_reconToFBAmodel2.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/recon2FBAmodel/tutorial_reconToFBAmodel2.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/recon2FBAmodel/tutorial_reconToFBAmodel2.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/recon2FBAmodel/tutorial_reconToFBAmodel2.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/recon2FBAmodel" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialReconToFBAmodel_old.html b/stable/tutorials/tutorialReconToFBAmodel_old.html
index 5aba4a48f6..4e1fe66354 100644
--- a/stable/tutorials/tutorialReconToFBAmodel_old.html
+++ b/stable/tutorials/tutorialReconToFBAmodel_old.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/recon2FBAmodel/old/tutorial_reconToFBAmodel_old.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/recon2FBAmodel/old/tutorial_reconToFBAmodel_old.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/recon2FBAmodel/old/tutorial_reconToFBAmodel_old.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/recon2FBAmodel/old/tutorial_reconToFBAmodel_old.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/recon2FBAmodel/old" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialReconstructionSOP.html b/stable/tutorials/tutorialReconstructionSOP.html
index 0118ef92e8..85b5e13c84 100644
--- a/stable/tutorials/tutorialReconstructionSOP.html
+++ b/stable/tutorials/tutorialReconstructionSOP.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/reconstructionSOP/tutorial_reconstructionSOP.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/reconstruction/reconstructionSOP/tutorial_reconstructionSOP.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/reconstructionSOP/tutorial_reconstructionSOP.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/reconstructionSOP/tutorial_reconstructionSOP.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/reconstructionSOP" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialRelaxedFBA.html b/stable/tutorials/tutorialRelaxedFBA.html
index 50ef2bdd3a..badaf83b65 100644
--- a/stable/tutorials/tutorialRelaxedFBA.html
+++ b/stable/tutorials/tutorialRelaxedFBA.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/relaxedFBA/tutorial_relaxedFBA.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/relaxedFBA/tutorial_relaxedFBA.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/relaxedFBA/tutorial_relaxedFBA.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/relaxedFBA/tutorial_relaxedFBA.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/relaxedFBA" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialRelaxedFBABounds.html b/stable/tutorials/tutorialRelaxedFBABounds.html
index d4bd90a658..81527f75f4 100644
--- a/stable/tutorials/tutorialRelaxedFBABounds.html
+++ b/stable/tutorials/tutorialRelaxedFBABounds.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
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-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/relaxedFBABounds/tutorial_relaxedFBABounds.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/relaxedFBABounds/tutorial_relaxedFBABounds.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/relaxedFBABounds/tutorial_relaxedFBABounds.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/relaxedFBABounds" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialRemoteVisualisation.html b/stable/tutorials/tutorialRemoteVisualisation.html
index 6837fa7e1c..6571831545 100644
--- a/stable/tutorials/tutorialRemoteVisualisation.html
+++ b/stable/tutorials/tutorialRemoteVisualisation.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
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-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/visualization/remoteVisualisation/tutorial_remoteVisualisation.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/remoteVisualisation/tutorial_remoteVisualisation.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/remoteVisualisation/tutorial_remoteVisualisation.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/visualization/remoteVisualisation" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialRobustnessPhPP.html b/stable/tutorials/tutorialRobustnessPhPP.html
index c0a44e8e11..a04b133a46 100644
--- a/stable/tutorials/tutorialRobustnessPhPP.html
+++ b/stable/tutorials/tutorialRobustnessPhPP.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/robustnessPhPP/tutorial_robustnessPhPP.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/robustnessPhPP/tutorial_robustnessPhPP.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
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-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/robustnessPhPP/tutorial_robustnessPhPP.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/robustnessPhPP" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialSammi.html b/stable/tutorials/tutorialSammi.html
index f623597443..88d060a256 100644
--- a/stable/tutorials/tutorialSammi.html
+++ b/stable/tutorials/tutorialSammi.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/visualization/SAMMIM/tutorial_Sammi.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/visualization/SAMMIM/tutorial_Sammi.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/SAMMIM/tutorial_Sammi.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/SAMMIM/tutorial_Sammi.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/visualization/SAMMIM" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialSensitivityAnalysis.html b/stable/tutorials/tutorialSensitivityAnalysis.html
index 302fd66f1e..9488077078 100644
--- a/stable/tutorials/tutorialSensitivityAnalysis.html
+++ b/stable/tutorials/tutorialSensitivityAnalysis.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/sensitivityAnalysis/tutorial_sensitivityAnalysis.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/sensitivityAnalysis/tutorial_sensitivityAnalysis.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/sensitivityAnalysis/tutorial_sensitivityAnalysis.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/sensitivityAnalysis/tutorial_sensitivityAnalysis.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/sensitivityAnalysis" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialSimulateAGORAGrowthInDiets.html b/stable/tutorials/tutorialSimulateAGORAGrowthInDiets.html
index 36e6f8ebce..7ba154d699 100644
--- a/stable/tutorials/tutorialSimulateAGORAGrowthInDiets.html
+++ b/stable/tutorials/tutorialSimulateAGORAGrowthInDiets.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
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-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/simulateAGORAGrowthInDiets/tutorial_simulateAGORAGrowthInDiets.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
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-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/simulateAGORAGrowthInDiets/tutorial_simulateAGORAGrowthInDiets.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/simulateAGORAGrowthInDiets" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialSparseFBA.html b/stable/tutorials/tutorialSparseFBA.html
index bc0d030ff5..d2006872a5 100644
--- a/stable/tutorials/tutorialSparseFBA.html
+++ b/stable/tutorials/tutorialSparseFBA.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/sparseFBA/tutorial_sparseFBA.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/sparseFBA/tutorial_sparseFBA.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/sparseFBA/tutorial_sparseFBA.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/sparseFBA/tutorial_sparseFBA.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/sparseFBA" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialSparseFBA_freeATPtest.html b/stable/tutorials/tutorialSparseFBA_freeATPtest.html
index 6b62d179b3..5b0bee4193 100644
--- a/stable/tutorials/tutorialSparseFBA_freeATPtest.html
+++ b/stable/tutorials/tutorialSparseFBA_freeATPtest.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/sparseFBA/tutorial_sparseFBA_freeATPtest.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/sparseFBA/tutorial_sparseFBA_freeATPtest.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/sparseFBA/tutorial_sparseFBA_freeATPtest.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/sparseFBA/tutorial_sparseFBA_freeATPtest.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/sparseFBA" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialSparseFBA_protonShuttle.html b/stable/tutorials/tutorialSparseFBA_protonShuttle.html
index b470fd8b7b..62ff8eb6e1 100644
--- a/stable/tutorials/tutorialSparseFBA_protonShuttle.html
+++ b/stable/tutorials/tutorialSparseFBA_protonShuttle.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/sparseFBA/tutorial_sparseFBA_protonShuttle.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/sparseFBA/tutorial_sparseFBA_protonShuttle.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/sparseFBA/tutorial_sparseFBA_protonShuttle.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/sparseFBA/tutorial_sparseFBA_protonShuttle.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/sparseFBA" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialSparseLP.html b/stable/tutorials/tutorialSparseLP.html
index 3f14d6be09..55aa83ad3c 100644
--- a/stable/tutorials/tutorialSparseLP.html
+++ b/stable/tutorials/tutorialSparseLP.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/sparseFBA/tutorial_sparseLP.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/sparseFBA/tutorial_sparseLP.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/sparseFBA/tutorial_sparseLP.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/sparseFBA/tutorial_sparseLP.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/sparseFBA" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialSteadyCom.html b/stable/tutorials/tutorialSteadyCom.html
index c699a8dec3..ae17e7b17e 100644
--- a/stable/tutorials/tutorialSteadyCom.html
+++ b/stable/tutorials/tutorialSteadyCom.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/steadyCom/tutorial_steadyCom.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/steadyCom/tutorial_steadyCom.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/steadyCom/tutorial_steadyCom.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/steadyCom/tutorial_steadyCom.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/steadyCom" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialTemplate.html b/stable/tutorials/tutorialTemplate.html
index 94e9eaf495..9b3276b85d 100644
--- a/stable/tutorials/tutorialTemplate.html
+++ b/stable/tutorials/tutorialTemplate.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials//home/rfleming/work/sbgCloud/code//fork-COBRA.tutorials/tutorial_template.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials//home/rfleming/work/sbgCloud/code//fork-COBRA.tutorials/tutorial_template.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master//home/rfleming/work/sbgCloud/code//fork-COBRA.tutorials/tutorial_template.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master//home/rfleming/work/sbgCloud/code//fork-COBRA.tutorials/tutorial_template.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master//home/rfleming/work/sbgCloud/code//fork-COBRA.tutorials" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
@@ -175,7 +176,7 @@ <h1>The COBRA Toolbox</h1>
 h1  {font-size:0px}
 </style>
 <div style="margin:-30px; margin-right:-30px;">
-<iframe frameborder="0" id="iFrameResizer0" scrolling="yes" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials//home/rfleming/work/sbgCloud/code//fork-COBRA.tutorials/iframe_tutorial_template.html" style="overflow: visible; height: 228px;" width="100%"></iframe>
+<iframe frameborder="0" id="iFrameResizer0" scrolling="yes" src="../_static/cobratoolbox/tutorials//home/rfleming/work/sbgCloud/code//fork-COBRA.tutorials/iframe_tutorial_template.html" style="overflow: visible; height: 228px;" width="100%"></iframe>
 </div>
 <script src="../_static/js/iframeResizer.min.js" type="text/javascript"></script>
 <script type="text/javascript">
diff --git a/stable/tutorials/tutorialUFBA.html b/stable/tutorials/tutorialUFBA.html
index a50d88a9d8..5ae33cae90 100644
--- a/stable/tutorials/tutorialUFBA.html
+++ b/stable/tutorials/tutorialUFBA.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/dataIntegration/uFBA/tutorial_uFBA.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/dataIntegration/uFBA/tutorial_uFBA.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/dataIntegration/uFBA/tutorial_uFBA.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/dataIntegration/uFBA/tutorial_uFBA.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/dataIntegration/uFBA" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialUniformSampling.html b/stable/tutorials/tutorialUniformSampling.html
index deffc3ae17..fd2d997f9a 100644
--- a/stable/tutorials/tutorialUniformSampling.html
+++ b/stable/tutorials/tutorialUniformSampling.html
@@ -44,7 +44,7 @@
 <div class="wy-side-scroll">
 <div class="wy-side-nav-search">
 <a href="../index.html">
-<img alt="logo" class="logo" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/logo.png"/>
+<img alt="logo" class="logo" src="../_static/cobratoolbox/img/logo.png"/>
 </a>
 <h1>The COBRA Toolbox</h1>
 <div role="search">
@@ -75,7 +75,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -131,36 +131,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/uniformSampling/tutorial_uniformSampling.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/uniformSampling/tutorial_uniformSampling.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/cobratoolbox/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/uniformSampling/tutorial_uniformSampling.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/cobratoolbox/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/uniformSampling/tutorial_uniformSampling.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/cobratoolbox/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/uniformSampling" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/cobratoolbox/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/cobratoolbox/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
@@ -170,7 +170,7 @@ <h1>The COBRA Toolbox</h1>
 h1  {font-size:0px}
 </style>
 <div style="margin:-30px; margin-right:-30px;">
-<iframe frameborder="0" id="iFrameResizer0" scrolling="yes" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/uniformSampling/iframe_tutorial_uniformSampling.html" style="overflow: visible; height: 228px;" width="100%"></iframe>
+<iframe frameborder="0" id="iFrameResizer0" scrolling="yes" src="../_static/cobratoolbox/tutorials/analysis/uniformSampling/iframe_tutorial_uniformSampling.html" style="overflow: visible; height: 228px;" width="100%"></iframe>
 </div>
 <script src="../_static/js/iframeResizer.min.js" type="text/javascript"></script>
 <script type="text/javascript">
diff --git a/stable/tutorials/tutorialUniformSampling_Ecore.html b/stable/tutorials/tutorialUniformSampling_Ecore.html
index bbc59a7df6..7484520a97 100644
--- a/stable/tutorials/tutorialUniformSampling_Ecore.html
+++ b/stable/tutorials/tutorialUniformSampling_Ecore.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/uniformSampling/tutorial_uniformSampling_Ecore.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/uniformSampling/tutorial_uniformSampling_Ecore.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/uniformSampling/tutorial_uniformSampling_Ecore.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/uniformSampling/tutorial_uniformSampling_Ecore.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/uniformSampling" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialUniformSampling_genomeScale.html b/stable/tutorials/tutorialUniformSampling_genomeScale.html
index 3d9dd89ab2..3be9841d15 100644
--- a/stable/tutorials/tutorialUniformSampling_genomeScale.html
+++ b/stable/tutorials/tutorialUniformSampling_genomeScale.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/uniformSampling/tutorial_uniformSampling_genomeScale.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/uniformSampling/tutorial_uniformSampling_genomeScale.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/uniformSampling/tutorial_uniformSampling_genomeScale.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/uniformSampling/tutorial_uniformSampling_genomeScale.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/uniformSampling" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialVariationalKinetics.html b/stable/tutorials/tutorialVariationalKinetics.html
index 67a689f7d7..f68635f575 100644
--- a/stable/tutorials/tutorialVariationalKinetics.html
+++ b/stable/tutorials/tutorialVariationalKinetics.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/variationalKinetics/tutorial_variationalKinetics.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/variationalKinetics/tutorial_variationalKinetics.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/variationalKinetics/tutorial_variationalKinetics.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/variationalKinetics/tutorial_variationalKinetics.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/variationalKinetics" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialVerify.html b/stable/tutorials/tutorialVerify.html
index b383a4c239..974bfa5fc5 100644
--- a/stable/tutorials/tutorialVerify.html
+++ b/stable/tutorials/tutorialVerify.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/base/verify/tutorial_verify.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/base/verify/tutorial_verify.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/verify/tutorial_verify.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/base/verify/tutorial_verify.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/base/verify" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialVisualiseConservedMoieties.html b/stable/tutorials/tutorialVisualiseConservedMoieties.html
index 2908329e62..010a6d9163 100644
--- a/stable/tutorials/tutorialVisualiseConservedMoieties.html
+++ b/stable/tutorials/tutorialVisualiseConservedMoieties.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/conservedMoieties/tutorial_visualiseConservedMoieties.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/conservedMoieties/tutorial_visualiseConservedMoieties.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/conservedMoieties/tutorial_visualiseConservedMoieties.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/conservedMoieties/tutorial_visualiseConservedMoieties.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/conservedMoieties" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialVonBertalanffy.html b/stable/tutorials/tutorialVonBertalanffy.html
index 0337328f53..53f6f31e2a 100644
--- a/stable/tutorials/tutorialVonBertalanffy.html
+++ b/stable/tutorials/tutorialVonBertalanffy.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/vonBertalanffy/tutorial_vonBertalanffy.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/vonBertalanffy/tutorial_vonBertalanffy.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/vonBertalanffy/tutorial_vonBertalanffy.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/vonBertalanffy/tutorial_vonBertalanffy.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/vonBertalanffy" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialVonBertalanffy_Recon3DModel_301.html b/stable/tutorials/tutorialVonBertalanffy_Recon3DModel_301.html
index a6da2f72cb..ee5ecadc24 100644
--- a/stable/tutorials/tutorialVonBertalanffy_Recon3DModel_301.html
+++ b/stable/tutorials/tutorialVonBertalanffy_Recon3DModel_301.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/vonBertalanffy/tutorial_vonBertalanffy_Recon3DModel_301.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/vonBertalanffy/tutorial_vonBertalanffy_Recon3DModel_301.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/vonBertalanffy/tutorial_vonBertalanffy_Recon3DModel_301.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/vonBertalanffy/tutorial_vonBertalanffy_Recon3DModel_301.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/vonBertalanffy" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialVonBertalanffy_iAF1260.html b/stable/tutorials/tutorialVonBertalanffy_iAF1260.html
index f2795f0d6d..a8bd10878b 100644
--- a/stable/tutorials/tutorialVonBertalanffy_iAF1260.html
+++ b/stable/tutorials/tutorialVonBertalanffy_iAF1260.html
@@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 </div>
 </div>
@@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
 <ul class="metro">
 <li class="small-tile-text color_class5 scale-10">
-<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/analysis/vonBertalanffy/tutorial_vonBertalanffy_iAF1260.pdf" style="width: 90px; height: 90px;">
-<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
+<a class="tile" href="../_static/cobratoolbox/tutorials/analysis/vonBertalanffy/tutorial_vonBertalanffy_iAF1260.pdf" style="width: 90px; height: 90px;">
+<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
 </a>
 <div>Download PDF</div>
 </li>
             
         <li class="small-tile-text color_class6 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/vonBertalanffy/tutorial_vonBertalanffy_iAF1260.mlx" style="width: 90px; height: 90px;">
-<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
+<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
 </a>
 <div>Download live Script</div>
 </li>
             
         <li class="small-tile-text color_class7 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/analysis/vonBertalanffy/tutorial_vonBertalanffy_iAF1260.m" style="width: 90px; height: 90px;">
-<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
+<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
 </a>
 <div>Download m file</div>
 </li>
             
         <li class="small-tile-text color_class8 scale-10">
 <a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/analysis/vonBertalanffy" style="width: 90px; height: 90px;">
-<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
+<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
 </a>
 <div>View on GitHub</div>
 </li>
             
         <li class="small-tile-text color_class2 scale-10">
 <a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
-<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
+<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
 </a>
 <div>Tutorials</div>
 </li>
diff --git a/stable/tutorials/tutorialtutorial_pFBA4.html b/stable/tutorials/tutorialtutorial_pFBA4.html
index f549dc9384..3b0e6003cd 100644
--- a/stable/tutorials/tutorialtutorial_pFBA4.html
+++ b/stable/tutorials/tutorialtutorial_pFBA4.html
@@ -122,7 +122,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -157,6 +157,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 
           
@@ -195,36 +196,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
     <ul class="metro">
         <li class="small-tile-text color_class5 scale-10">
-            <a class="tile" style="width: 90px; height: 90px;" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.pdf">
-                <img src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png" height="90px" alt="PDF file">
+            <a class="tile" style="width: 90px; height: 90px;" href="../_static/cobratoolbox/tutorials/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.pdf">
+                <img src="../_static/img/icon5.png" height="90px" alt="PDF file">
             </a>
             <div>Download PDF</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class6 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.mlx">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png" height="90px" alt="live Script">
+            <img src="../_static/img/icon6.png" height="90px" alt="live Script">
             </a>
               <div>Download live Script</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class7 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.m">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png" height="90px" alt="m file">
+            <img src="../_static/img/icon7.png" height="90px" alt="m file">
             </a>
               <div>Download m file</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class8 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/constrainingModels">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png" height="90px" alt="GitHub">
+            <img src="../_static/img/icon8.png" height="90px" alt="GitHub">
             </a>
               <div>View on GitHub</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class2 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png" height="90px" alt="tutorials">
+            <img src="../_static/img/icon2.png" height="90px" alt="tutorials">
             </a>
               <div>Tutorials</div>
         </li>
diff --git a/stable/tutorials/tutorialtutorial_pFBA4_test2.html b/stable/tutorials/tutorialtutorial_pFBA4_test2.html
index 04a02fff66..b39c0e1fd3 100644
--- a/stable/tutorials/tutorialtutorial_pFBA4_test2.html
+++ b/stable/tutorials/tutorialtutorial_pFBA4_test2.html
@@ -122,7 +122,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -157,6 +157,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 
           
@@ -195,36 +196,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
     <ul class="metro">
         <li class="small-tile-text color_class5 scale-10">
-            <a class="tile" style="width: 90px; height: 90px;" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.pdf">
-                <img src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png" height="90px" alt="PDF file">
+            <a class="tile" style="width: 90px; height: 90px;" href="../_static/cobratoolbox/tutorials/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.pdf">
+                <img src="../_static/img/icon5.png" height="90px" alt="PDF file">
             </a>
             <div>Download PDF</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class6 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.mlx">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png" height="90px" alt="live Script">
+            <img src="../_static/img/icon6.png" height="90px" alt="live Script">
             </a>
               <div>Download live Script</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class7 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.m">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png" height="90px" alt="m file">
+            <img src="../_static/img/icon7.png" height="90px" alt="m file">
             </a>
               <div>Download m file</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class8 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/constrainingModels">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png" height="90px" alt="GitHub">
+            <img src="../_static/img/icon8.png" height="90px" alt="GitHub">
             </a>
               <div>View on GitHub</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class2 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png" height="90px" alt="tutorials">
+            <img src="../_static/img/icon2.png" height="90px" alt="tutorials">
             </a>
               <div>Tutorials</div>
         </li>
diff --git a/stable/tutorials/tutorialtutorial_reconToFBAmodel.html b/stable/tutorials/tutorialtutorial_reconToFBAmodel.html
index d0845077cb..4a3a32b6d7 100644
--- a/stable/tutorials/tutorialtutorial_reconToFBAmodel.html
+++ b/stable/tutorials/tutorialtutorial_reconToFBAmodel.html
@@ -122,7 +122,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -157,6 +157,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 
           
@@ -195,36 +196,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
     <ul class="metro">
         <li class="small-tile-text color_class5 scale-10">
-            <a class="tile" style="width: 90px; height: 90px;" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.pdf">
-                <img src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png" height="90px" alt="PDF file">
+            <a class="tile" style="width: 90px; height: 90px;" href="../_static/cobratoolbox/tutorials/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.pdf">
+                <img src="../_static/img/icon5.png" height="90px" alt="PDF file">
             </a>
             <div>Download PDF</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class6 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.mlx">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png" height="90px" alt="live Script">
+            <img src="../_static/img/icon6.png" height="90px" alt="live Script">
             </a>
               <div>Download live Script</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class7 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.m">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png" height="90px" alt="m file">
+            <img src="../_static/img/icon7.png" height="90px" alt="m file">
             </a>
               <div>Download m file</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class8 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/constrainingModels">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png" height="90px" alt="GitHub">
+            <img src="../_static/img/icon8.png" height="90px" alt="GitHub">
             </a>
               <div>View on GitHub</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class2 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png" height="90px" alt="tutorials">
+            <img src="../_static/img/icon2.png" height="90px" alt="tutorials">
             </a>
               <div>Tutorials</div>
         </li>
diff --git a/stable/tutorials/tutorialtutorial_steadyCom2.html b/stable/tutorials/tutorialtutorial_steadyCom2.html
index f06e21ab65..66210faf94 100644
--- a/stable/tutorials/tutorialtutorial_steadyCom2.html
+++ b/stable/tutorials/tutorialtutorial_steadyCom2.html
@@ -122,7 +122,7 @@ <h1>The COBRA Toolbox</h1>
     	template: {
 	    	type: "custom",
 		    method: function(value, item) {
-                return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
+                return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
 		    }
 	    },
 
@@ -157,6 +157,7 @@ <h1>The COBRA Toolbox</h1>
 <li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
 </ul>
 
           
@@ -195,36 +196,36 @@ <h1>The COBRA Toolbox</h1>
 <div class="wrapper">
     <ul class="metro">
         <li class="small-tile-text color_class5 scale-10">
-            <a class="tile" style="width: 90px; height: 90px;" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.pdf">
-                <img src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png" height="90px" alt="PDF file">
+            <a class="tile" style="width: 90px; height: 90px;" href="../_static/cobratoolbox/tutorials/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.pdf">
+                <img src="../_static/img/icon5.png" height="90px" alt="PDF file">
             </a>
             <div>Download PDF</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class6 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.mlx">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png" height="90px" alt="live Script">
+            <img src="../_static/img/icon6.png" height="90px" alt="live Script">
             </a>
               <div>Download live Script</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class7 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.m">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png" height="90px" alt="m file">
+            <img src="../_static/img/icon7.png" height="90px" alt="m file">
             </a>
               <div>Download m file</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class8 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/constrainingModels">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png" height="90px" alt="GitHub">
+            <img src="../_static/img/icon8.png" height="90px" alt="GitHub">
             </a>
               <div>View on GitHub</div>
         </li>
         &nbsp;&nbsp;&nbsp;&nbsp;
         <li class="small-tile-text color_class2 scale-10">
             <a class="tile" style="width: 90px; height: 90px;" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html">
-            <img src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png" height="90px" alt="tutorials">
+            <img src="../_static/img/icon2.png" height="90px" alt="tutorials">
             </a>
               <div>Tutorials</div>
         </li>