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Fix some Pydantic V2 deprecations in tests #7734

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Fix some Pydantic V2 deprecations in tests

Fix some Pydantic V2 deprecations in tests #7734

Test on ubuntu-latest, Python 3.12, OpenEye=true, NAGL=true

Test on ubuntu-latest, Python 3.12, OpenEye=true, NAGL=true
succeeded Sep 12, 2026 in 36m 46s