[REVIEW]: textAnnotatoR: An Interactive Text Annotation Tool with 'shiny' GUI

[editorialbot]

Submitting author: @chaoliu-cl (Chao Liu)
Repository: https://github.com/chaoliu-cl/textAnnotatoR
Branch with paper.md (empty if default branch): master
Version: v1.0.1
Editor: @ajstewartlang
Reviewers: @rhenkin, @kbenoit
Archive: 10.5281/zenodo.16995894

Status

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Reviewers and authors:

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Reviewer instructions & questions

@rhenkin & @cmaimone, your review will be checklist based. Each of you will have a separate checklist that you should update when carrying out your review.
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@editorialbot generate my checklist

The reviewer guidelines are available here: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html. Any questions/concerns please let @ajstewartlang know.

✨ Please start on your review when you are able, and be sure to complete your review in the next six weeks, at the very latest ✨

Checklists

📝 Checklist for @rhenkin

📝 Checklist for @cmaimone

📝 Checklist for @kbenoit

[editorialbot]

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[ajstewartlang]

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[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- None

🟡 SKIP DOIs

- No DOI given, and none found for title: RQDA: R-based Qualitative Data Analysis
- No DOI given, and none found for title: Qualitative Analysis Software (ATLAS.ti/Ethnograph...
- No DOI given, and none found for title: R: A Language and Environment for Statistical Comp...
- No DOI given, and none found for title: shiny: Web Application Framework for R
- No DOI given, and none found for title: The jsonlite Package: A Practical and Consistent M...

❌ MISSING DOIs

- 10.32614/cran.package.shinydashboard may be a valid DOI for title: shinydashboard: Create Dashboards with ’Shiny’
- 10.32614/cran.package.data.tree may be a valid DOI for title: data.tree: General Purpose Hierarchical Data Struc...
- 10.32614/cran.package.dt may be a valid DOI for title: DT: A Wrapper of the JavaScript Library ’DataTable...
- 10.32614/cran.package.readtext may be a valid DOI for title: readtext: Import and Handling for Plain and Format...

❌ INVALID DOIs

- None

[editorialbot]

Software report:

github.com/AlDanial/cloc v 1.98  T=0.03 s (650.6 files/s, 263020.3 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
R                               10            758           2180           4259
Markdown                         4             79              0            197
YAML                             3             20              5             81
TeX                              1              8              0             67
Rmd                              2            121            267             43
-------------------------------------------------------------------------------
SUM:                            20            986           2452           4647
-------------------------------------------------------------------------------

Commit count by author:

    23	Chao Liu

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[editorialbot]

Paper file info:

📄 Wordcount for paper.md is 935

✅ The paper includes a Statement of need section

[editorialbot]

License info:

🟡 License found: GNU General Public License v3.0 (Check here for OSI approval)

[editorialbot]

⚠️ An error happened when generating the pdf.

[cmaimone]

Review checklist for @cmaimone

Conflict of interest

• I confirm that I have read the JOSS conflict of interest (COI) policy and that: I have no COIs with reviewing this work or that any perceived COIs have been waived by JOSS for the purpose of this review.

Code of Conduct

• I confirm that I read and will adhere to the JOSS code of conduct.

General checks

• Repository: Is the source code for this software available at the https://github.com/chaoliu-cl/textAnnotatoR?
• License: Does the repository contain a plain-text LICENSE or COPYING file with the contents of an OSI approved software license?
• Contribution and authorship: Has the submitting author (@chaoliu-cl) made major contributions to the software? Does the full list of paper authors seem appropriate and complete?
• Substantial scholarly effort: Does this submission meet the scope eligibility described in the JOSS guidelines
• Data sharing: If the paper contains original data, data are accessible to the reviewers. If the paper contains no original data, please check this item.
• Reproducibility: If the paper contains original results, results are entirely reproducible by reviewers. If the paper contains no original results, please check this item.
• Human and animal research: If the paper contains original data research on humans subjects or animals, does it comply with JOSS's human participants research policy and/or animal research policy? If the paper contains no such data, please check this item.

Functionality

• Installation: Does installation proceed as outlined in the documentation?
• Functionality: Have the functional claims of the software been confirmed?
• Performance: If there are any performance claims of the software, have they been confirmed? (If there are no claims, please check off this item.)

Documentation

• A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
• Installation instructions: Is there a clearly-stated list of dependencies? Ideally these should be handled with an automated package management solution.
• Example usage: Do the authors include examples of how to use the software (ideally to solve real-world analysis problems).
• Functionality documentation: Is the core functionality of the software documented to a satisfactory level (e.g., API method documentation)?
• Automated tests: Are there automated tests or manual steps described so that the functionality of the software can be verified?
• Community guidelines: Are there clear guidelines for third parties wishing to 1. Contribute to the software 2. Report issues or problems with the software 3. Seek support

Software paper

• Summary: Has a clear description of the high-level functionality and purpose of the software for a diverse, non-specialist audience been provided?
• A statement of need: Does the paper have a section titled 'Statement of need' that clearly states what problems the software is designed to solve, who the target audience is, and its relation to other work?
• State of the field: Do the authors describe how this software compares to other commonly-used packages?
• Quality of writing: Is the paper well written (i.e., it does not require editing for structure, language, or writing quality)?
• References: Is the list of references complete, and is everything cited appropriately that should be cited (e.g., papers, datasets, software)? Do references in the text use the proper citation syntax?