jsmol/vibrate.htm at main · openmopac/jsmol · GitHub

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<!DOCTYPE html>
<html>
  <head>
    <meta charset="utf-8">
    <title>jmol applet vibrations demo</title>
    <script src="JSmol.min.js"></script>
    <script src="js/Jmol2.js"></script>
    <script>


//jmolInitialize(".");

function loadVibs(){
 var Info = jmolGetPropertyAsArray("auxiliaryinfo.VibFreqs")
 if(!Info){
	alert("No VibFreqs")
	return
 }
 var s="<select id=vib onchange='showFrame(value)' onkeypress='showFrame()'><option value='1'>no vibration (model 1)</option>";
 for(var i=0;i<Info.length;i++)
  s+="<option value='"+(i+2)+"'>"+Info[i].freq + " cm-1 "+Info[i].label+"</option>"
 s+="</select>"
 document.getElementById("freqDiv").innerHTML = s

}


function showFrame(i){
 if(arguments.length == 0){
    setTimeout("showFrame(-1)",100)
    return
 }
 if(i==-1) {
  var d=document.getElementById("vib")
  i=d[d.selectedIndex].value
 }
 jmolScript("frame " + i)
}

    </script>
  </head>
  <body>
    <form>

      <table border="1">
	<tr>
	  <td>
	    <h2>automatically read vibrations in SMOL files</h2>
	    <script>
	      var script =
	      "load data/c6h6.smol; wireframe .1; cpk off;" +
	      "frame 1; vectors 0.05;vector scale 2.0 ; color vectors yellow;" +
	      "move 10 -20 10 0 0 0 0 0 1; delay 1; vibration on;vibration scale 0.4;";
	      jmolApplet(300, script);

	    </script>
	  </td>

	  <td><div id="freqDiv"><a href="javascript:loadVibs()">show vibration frequency list</a>
</div>
	    </blockquote>

<br>

	    Of course, all the other Jmol script commands work as well:<br>

	    <blockquote>
	      <script>
		jmolCheckbox("vibration on", "vibration off", "vibration", "checked");
		jmolBr();
		jmolCheckbox("vectors 0.05", "vectors off", "vectors", "checked");
		jmolBr();
		jmolRadioGroup([
		["color vectors yellow", null, "checked"],
		"color vectors purple"
		]);
		jmolBr();
		jmolRadioGroup([
		["spacefill off", null, "checked"],
		"spacefill 20%",
		"spacefill 100%"
		]);
		jmolBr();
		jmolRadioGroup([
		"wireframe on",
		["wireframe 0.1", null, "checked"],
		]);
		jmolBr();
		jmolCheckbox("spin on", "spin off", "spin");
		jmolBr();
	      </script>
	    </blockquote>
	  </td>
	</tr>
      </table>
    </form>
<div id=test></div>
  </body>

</html>