remove dcm2niix install, add window and osx to phantoms #9
Workflow file for this run
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| name: Test Included Binaries | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - add-dcm2niix-binaries | |
| pull_request: | |
| branches: | |
| - main | |
| - add-dcm2niix-binaries | |
| workflow_dispatch: | |
| inputs: | |
| debug_enabled: | |
| type: boolean | |
| description: 'Run with tmate debugging enabled' | |
| required: false | |
| default: false | |
| jobs: | |
| test-included-binaries: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python: ['3.12'] | |
| fail-fast: false | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install UV | |
| if: matrix.os != 'windows-latest' | |
| run: curl -LsSf https://astral.sh/uv/install.sh | sh && echo "$HOME/.cargo/bin" >> $GITHUB_PATH | |
| - name: Install UV (Windows) | |
| if: matrix.os == 'windows-latest' | |
| run: | | |
| powershell -c "irm https://astral.sh/uv/install.ps1 | iex" | |
| echo "$env:USERPROFILE\.cargo\bin" >> $env:GITHUB_PATH | |
| - name: Install dependencies | |
| run: | | |
| cd pypet2bids | |
| uv add --dev pytest | |
| uv sync | |
| - name: Debug Session | |
| uses: mxschmitt/action-tmate@v3 | |
| if: ${{ github.event_name == 'workflow_dispatch' && inputs.debug_enabled }} | |
| timeout-minutes: 15 | |
| with: | |
| limit-access-to-actor: true | |
| - name: Run Tests | |
| run: | | |
| cd pypet2bids | |
| uv run pytest tests/test_included_binaries.py -v |