From b47619f1dfcd666c6d1c8021e93fa34c18a17cb4 Mon Sep 17 00:00:00 2001
From: mathesong <mathesong@gmail.com>
Date: Fri, 6 Dec 2024 16:08:52 +0100
Subject: [PATCH 1/2] Updated links for spreadsheet conversion

---
 spreadsheet_conversion/Readme.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/spreadsheet_conversion/Readme.md b/spreadsheet_conversion/Readme.md
index ff2ea3a..5c2bff5 100644
--- a/spreadsheet_conversion/Readme.md
+++ b/spreadsheet_conversion/Readme.md
@@ -4,7 +4,7 @@ When data are already converted, it can be easier to create metadata separately,
 
 ## Spreadsheet
 
-You can use the [template](https://github.com/openneuropet/BIDS-converter/blob/main/Metadata_in/metadata_excel_template.xlsx) to prepare the metadata. Note that new/old excel (.xlsx .xls) or open format (.ods) can be used.  
+You can use the [single-subject template](https://github.com/openneuropet/PET2BIDS/raw/refs/heads/main/spreadsheet_conversion/single_subject_sheet/subject_metadata_template.xlsx) to prepare the metadata. Note that new/old excel (.xlsx .xls) or open format (.ods) can be used.  For reference, here is an [example spreadsheet](https://github.com/openneuropet/PET2BIDS/raw/refs/heads/main/spreadsheet_conversion/single_subject_sheet/subject_metadata_example.xlsx)
 
 The example files, show the excel file and the resulting conversion as json.
 

From 4f4fa231341ba7f70f239a727064c99a2837ae27 Mon Sep 17 00:00:00 2001
From: mathesong <mathesong@gmail.com>
Date: Fri, 6 Dec 2024 16:16:03 +0100
Subject: [PATCH 2/2] Fixed spreadsheet links in readthedocs too

---
 docs/spreadsheets.rst | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/docs/spreadsheets.rst b/docs/spreadsheets.rst
index 46a2f2b..4438d06 100644
--- a/docs/spreadsheets.rst
+++ b/docs/spreadsheets.rst
@@ -14,14 +14,14 @@ dedicated to the topic of spreadsheets and PET blood/radioligand/radioactivity d
 Handled Types of Spreadsheets (known)
 -------------------------------------
 
-`link to repository section <https://github.com/OpenNeuroPET/PET2BIDS/spreadsheet_conversion>`_
+`link to repository section <https://github.com/openneuropet/PET2BIDS/tree/main/spreadsheet_conversion>`_
 
 **Excel**
 
-- `Ideal single subject example <https://github.com/OpenNeuroPET/PET2BIDS/spreadsheet_conversion/single_subject_sheet/subject_metadata_example.xlsx>`_
+- `Ideal single subject example <https://github.com/openneuropet/PET2BIDS/raw/refs/heads/main/spreadsheet_conversion/single_subject_sheet/subject_metadata_example.xlsx>`_
 - Here is an example of a
-  `Many Subject Spreadsheet <https://github.com/OpenNeuroPET/PET2BIDS/spreadsheet_conversion/many_subjects_sheet/subjects_metadata_example.xlsx>`_
-  paired with a `single subject spreadsheet  <https://github.com/OpenNeuroPET/PET2BIDS/spreadsheet_conversion/many_subjects_sheet/subject_>`_
+  `Many Subject Spreadsheet <https://github.com/openneuropet/PET2BIDS/raw/refs/heads/main/spreadsheet_conversion/many_subjects_sheet/scanner_metadata_example.xlsx>`_
+  paired with a `single subject spreadsheet  <https://github.com/openneuropet/PET2BIDS/raw/refs/heads/main/spreadsheet_conversion/many_subjects_sheet/subjects_metadata_example.xlsx>`_
   these can be used when updating BIDS datasets w/ homogeneous scanner/experiment data along with heterogeneous (subject)
   data.