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Merged
merged 2 commits into from
Dec 6, 2024
Merged

Updated links for spreadsheet conversion #324

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b47619f
Updated links for spreadsheet conversion
mathesong Dec 6, 2024
4f4fa23
Fixed spreadsheet links in readthedocs too
mathesong Dec 6, 2024
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8 changes: 4 additions & 4 deletions docs/spreadsheets.rst
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Expand Up @@ -14,14 +14,14 @@ dedicated to the topic of spreadsheets and PET blood/radioligand/radioactivity d
Handled Types of Spreadsheets (known)
-------------------------------------

`link to repository section <https://github.com/OpenNeuroPET/PET2BIDS/spreadsheet_conversion>`_
`link to repository section <https://github.com/openneuropet/PET2BIDS/tree/main/spreadsheet_conversion>`_

**Excel**

- `Ideal single subject example <https://github.com/OpenNeuroPET/PET2BIDS/spreadsheet_conversion/single_subject_sheet/subject_metadata_example.xlsx>`_
- `Ideal single subject example <https://github.com/openneuropet/PET2BIDS/raw/refs/heads/main/spreadsheet_conversion/single_subject_sheet/subject_metadata_example.xlsx>`_
- Here is an example of a
`Many Subject Spreadsheet <https://github.com/OpenNeuroPET/PET2BIDS/spreadsheet_conversion/many_subjects_sheet/subjects_metadata_example.xlsx>`_
paired with a `single subject spreadsheet <https://github.com/OpenNeuroPET/PET2BIDS/spreadsheet_conversion/many_subjects_sheet/subject_>`_
`Many Subject Spreadsheet <https://github.com/openneuropet/PET2BIDS/raw/refs/heads/main/spreadsheet_conversion/many_subjects_sheet/scanner_metadata_example.xlsx>`_
paired with a `single subject spreadsheet <https://github.com/openneuropet/PET2BIDS/raw/refs/heads/main/spreadsheet_conversion/many_subjects_sheet/subjects_metadata_example.xlsx>`_
these can be used when updating BIDS datasets w/ homogeneous scanner/experiment data along with heterogeneous (subject)
data.

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2 changes: 1 addition & 1 deletion spreadsheet_conversion/Readme.md
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Expand Up @@ -4,7 +4,7 @@ When data are already converted, it can be easier to create metadata separately,

## Spreadsheet

You can use the [template](https://github.com/openneuropet/BIDS-converter/blob/main/Metadata_in/metadata_excel_template.xlsx) to prepare the metadata. Note that new/old excel (.xlsx .xls) or open format (.ods) can be used.
You can use the [single-subject template](https://github.com/openneuropet/PET2BIDS/raw/refs/heads/main/spreadsheet_conversion/single_subject_sheet/subject_metadata_template.xlsx) to prepare the metadata. Note that new/old excel (.xlsx .xls) or open format (.ods) can be used. For reference, here is an [example spreadsheet](https://github.com/openneuropet/PET2BIDS/raw/refs/heads/main/spreadsheet_conversion/single_subject_sheet/subject_metadata_example.xlsx)

The example files, show the excel file and the resulting conversion as json.

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