diff --git a/spreadsheet_conversion/Readme.md b/spreadsheet_conversion/Readme.md index 5c2bff5..eda3753 100644 --- a/spreadsheet_conversion/Readme.md +++ b/spreadsheet_conversion/Readme.md @@ -2,12 +2,16 @@ When data are already converted, it can be easier to create metadata separately, here as json file to follow [PET-BIDS](https://bids-specification.readthedocs.io/en/stable/04-modality-specific-files/09-positron-emission-tomography.html). -## Spreadsheet +## 1 spreadsheet per subject You can use the [single-subject template](https://github.com/openneuropet/PET2BIDS/raw/refs/heads/main/spreadsheet_conversion/single_subject_sheet/subject_metadata_template.xlsx) to prepare the metadata. Note that new/old excel (.xlsx .xls) or open format (.ods) can be used. For reference, here is an [example spreadsheet](https://github.com/openneuropet/PET2BIDS/raw/refs/heads/main/spreadsheet_conversion/single_subject_sheet/subject_metadata_example.xlsx) The example files, show the excel file and the resulting conversion as json. +## 1 spreadsheet for many subjects + +In most cases, you subjects are converted (say using dcm2niix) and you need to update the json files with the metadata for all subjects. This is easily acheived using our preformated [scanner excel sheet](https://github.com/openneuropet/PET2BIDS/blob/main/spreadsheet_conversion/many_subjects_sheet/scanner_metadata_template.xlsx) which applies that information to all and the [tracer related excel sheet](https://github.com/openneuropet/PET2BIDS/blob/main/spreadsheet_conversion/many_subjects_sheet/subjects_metadata_template.xlsx). + ## convert_spreadsheet_metadata.m -The matlab function `convert_spreadsheet_metadata.m` can be called and users are prompted to select a spreadsheet, or it can be passed directly as input. If command line is used, output name can also be specified, otherwise the same location and name is used to create the json file. \ No newline at end of file +The matlab function `convert_spreadsheet_metadata.m` can be called and users are prompted to select a spreadsheet, or it can be passed directly as input. If command line is used, output name can also be specified, otherwise the same location and name is used to create the json file.