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added docker build workflows
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‎.github/workflows/docker-build-local.yml‎

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name: Docker Build (Local)
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on:
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push:
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branches: [ '*' ]
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pull_request:
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branches: [ '*' ]
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env:
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DOCKER_BUILDKIT: 1
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COMPOSE_DOCKER_CLI_BUILD: 1
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COMPOSE_FILE: ./docker-compose.yml
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jobs:
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build:
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runs-on: ubuntu-latest
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outputs:
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images: ${{ steps.save-images.outputs.images }}
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steps:
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- uses: actions/checkout@v4
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- name: Set up Docker Buildx
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uses: docker/setup-buildx-action@v3
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- name: Pull MongoDB
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run: docker pull mongo:4.4.15
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- name: Build API
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uses: docker/build-push-action@v5
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with:
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context: .
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file: ${{ env.COMPOSE_FILE }}
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target: api
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load: true
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tags: ezbids-api:test
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- name: Build Handler
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uses: docker/build-push-action@v5
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with:
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context: .
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file: ${{ env.COMPOSE_FILE }}
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target: handler
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load: true
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tags: ezbids-handler:test
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- name: Build UI
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uses: docker/build-push-action@v5
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with:
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context: .
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file: ${{ env.COMPOSE_FILE }}
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target: ui
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load: true
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tags: ezbids-ui:test
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- name: Save images
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id: save-images
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run: |
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# Save images to tar files
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docker save mongo:4.4.15 > mongo.tar
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docker save ezbids-api:test > api.tar
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docker save ezbids-handler:test > handler.tar
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docker save ezbids-ui:test > ui.tar
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# Upload as artifacts
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echo "images=mongo.tar,api.tar,handler.tar,ui.tar" >> $GITHUB_OUTPUT
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- name: Upload images
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uses: actions/upload-artifact@v4
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with:
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name: docker-images-local
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path: |
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mongo.tar
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api.tar
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handler.tar
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ui.tar
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retention-days: 1
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- name: Clean up
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run: docker system prune -f

‎.github/workflows/docker-build-nginx.yml‎

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name: Docker Build (Nginx)
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on:
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push:
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branches: [ '*' ]
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pull_request:
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branches: [ '*' ]
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env:
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DOCKER_BUILDKIT: 1
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COMPOSE_DOCKER_CLI_BUILD: 1
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COMPOSE_FILE: ./docker-compose-nginx.yml
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jobs:
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build:
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runs-on: ubuntu-latest
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outputs:
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images: ${{ steps.save-images.outputs.images }}
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steps:
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- uses: actions/checkout@v4
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- name: Set up Docker Buildx
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uses: docker/setup-buildx-action@v3
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- name: Pull MongoDB
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run: docker pull mongo:4.4.15
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- name: Build API
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uses: docker/build-push-action@v5
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with:
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context: .
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file: ${{ env.COMPOSE_FILE }}
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target: api
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load: true
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tags: ezbids-api-nginx:test
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- name: Build Handler
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uses: docker/build-push-action@v5
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with:
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context: .
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file: ${{ env.COMPOSE_FILE }}
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target: handler
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load: true
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tags: ezbids-handler-nginx:test
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- name: Build UI
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uses: docker/build-push-action@v5
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with:
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context: ./ui
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file: ./ui/Dockerfile-nginx
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load: true
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tags: ezbids-ui-nginx:test
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- name: Build Nginx
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uses: docker/build-push-action@v5
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with:
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context: .
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file: ${{ env.COMPOSE_FILE }}
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target: nginx
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load: true
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tags: ezbids-nginx:test
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- name: Save images
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id: save-images
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run: |
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# Save images to tar files
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docker save mongo:4.4.15 > mongo.tar
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docker save ezbids-api-nginx:test > api-nginx.tar
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docker save ezbids-handler-nginx:test > handler-nginx.tar
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docker save ezbids-ui-nginx:test > ui-nginx.tar
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docker save ezbids-nginx:test > nginx.tar
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# Upload as artifacts
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echo "images=mongo.tar,api-nginx.tar,handler-nginx.tar,ui-nginx.tar,nginx.tar" >> $GITHUB_OUTPUT
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- name: Upload images
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uses: actions/upload-artifact@v4
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with:
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name: docker-images-nginx
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path: |
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mongo.tar
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api-nginx.tar
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handler-nginx.tar
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ui-nginx.tar
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nginx.tar
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retention-days: 1
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- name: Clean up
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run: docker system prune -f

‎README.md‎

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The secure, cloud-based service for the semi-automated mapping of entire sessions of neuroimaging data to the Brain Imaging Data Structure ([BIDS](https://bids.neuroimaging.io/)) standard.
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[![Docker Build (Local)](https://github.com/brainlife/ezbids/actions/workflows/docker-build-local.yml/badge.svg)](https://github.com/brainlife/ezbids/actions/workflows/docker-build-local.yml)
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[![Docker Build (Nginx)](https://github.com/brainlife/ezbids/actions/workflows/docker-build-nginx.yml/badge.svg)](https://github.com/brainlife/ezbids/actions/workflows/docker-build-nginx.yml)
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<img width="1450" alt="Screenshot 2023-11-01 at 11 50 48 AM" src="https://github.com/brainlife/ezbids/assets/2119795/2c054297-1503-4ebb-8718-336012c80b48">
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710
### About

‎docker-compose.yml‎

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ui:
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container_name: brainlife_ezbids-ui
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env_file:
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- .env
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build: ./ui
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platform: linux/amd64
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environment:

‎ui/entrypoint.sh‎

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# If we're in production we want to build the ui and allow nginx to serve the files,
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# otherwise we run npm install which will create a ui page and use vite to serve it
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# in "development" mode
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if [ $BRAINLIFE_USE_NGINX == true ]; then
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if [ "${BRAINLIFE_USE_NGINX:-false}" = "true" ]; then
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npm run build
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else
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npm run dev

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