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pinned version of pet2bids (#57)
ezbids uses python 3.8, this change switches to an older version of pypet2bids that allows for the same
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handler/Dockerfile

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@@ -10,11 +10,11 @@ RUN apt update && \
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RUN apt update && apt install -y parallel python3 python3-pip tree curl unzip git jq python libgl-dev python-numpy bc
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RUN pip3 install numpy==1.23.0 nibabel==4.0.0 pandas matplotlib pyyaml==5.4.1 pydicom==2.3.1 natsort pydeface && \
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pip3 install quickshear mne mne-bids
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pip3 install quickshear mne mne-bids pypet2bids==1.4.1
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# Install pypet2bids
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RUN git clone https://github.com/openneuropet/PET2BIDS && \
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cd PET2BIDS && make installpoetry buildpackage installpackage
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#RUN git clone https://github.com/openneuropet/PET2BIDS && \
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# cd PET2BIDS && make installpoetry buildpackage installpackage
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RUN apt-get install -y build-essential pkg-config cmake git pigz rename zstd libopenjp2-7 libgdcm-tools wget libopenblas-dev && \
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apt-get clean -y && apt-get autoclean -y && apt-get autoremove -y

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