From 88e92034597ffbffae920abd313a73efa34e7bf8 Mon Sep 17 00:00:00 2001 From: Anthony Galassi <28850131+bendhouseart@users.noreply.github.com> Date: Thu, 26 Jun 2025 09:12:55 -0400 Subject: [PATCH] pinned version of pet2bids --- handler/Dockerfile | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/handler/Dockerfile b/handler/Dockerfile index 4d971b57..a68a5589 100755 --- a/handler/Dockerfile +++ b/handler/Dockerfile @@ -10,11 +10,11 @@ RUN apt update && \ RUN apt update && apt install -y parallel python3 python3-pip tree curl unzip git jq python libgl-dev python-numpy bc RUN pip3 install numpy==1.23.0 nibabel==4.0.0 pandas matplotlib pyyaml==5.4.1 pydicom==2.3.1 natsort pydeface && \ - pip3 install quickshear mne mne-bids + pip3 install quickshear mne mne-bids pypet2bids==1.4.1 # Install pypet2bids -RUN git clone https://github.com/openneuropet/PET2BIDS && \ - cd PET2BIDS && make installpoetry buildpackage installpackage +#RUN git clone https://github.com/openneuropet/PET2BIDS && \ +# cd PET2BIDS && make installpoetry buildpackage installpackage RUN apt-get install -y build-essential pkg-config cmake git pigz rename zstd libopenjp2-7 libgdcm-tools wget libopenblas-dev && \ apt-get clean -y && apt-get autoclean -y && apt-get autoremove -y