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Merged
merged 1 commit into from
Jun 26, 2025
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pinned version of pet2bids #57

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6 changes: 3 additions & 3 deletions handler/Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -10,11 +10,11 @@ RUN apt update && \
RUN apt update && apt install -y parallel python3 python3-pip tree curl unzip git jq python libgl-dev python-numpy bc

RUN pip3 install numpy==1.23.0 nibabel==4.0.0 pandas matplotlib pyyaml==5.4.1 pydicom==2.3.1 natsort pydeface && \
pip3 install quickshear mne mne-bids
pip3 install quickshear mne mne-bids pypet2bids==1.4.1

# Install pypet2bids
RUN git clone https://github.com/openneuropet/PET2BIDS && \
cd PET2BIDS && make installpoetry buildpackage installpackage
#RUN git clone https://github.com/openneuropet/PET2BIDS && \
# cd PET2BIDS && make installpoetry buildpackage installpackage

RUN apt-get install -y build-essential pkg-config cmake git pigz rename zstd libopenjp2-7 libgdcm-tools wget libopenblas-dev && \
apt-get clean -y && apt-get autoclean -y && apt-get autoremove -y
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