Update run_on_test_data.yaml #5

	name: Run petdeface on test data

	on:
	workflow_dispatch:
	push:
	branches: [ main, dev ]
	paths:
	- 'petdeface/**'
	- 'pyproject.toml'
	- 'uv.lock'
	- '.github/workflows/run_on_test_data.yaml'
	pull_request:
	branches: [ main, dev ]
	paths:
	- 'petdeface/**'
	- 'pyproject.toml'
	- 'uv.lock'
	- '.github/workflows/run_on_test_data.yaml'
	env:
	FREESURFER_HOME: "/usr/local/freesurfer/7.4.1"
	jobs:
	test-petdeface:
	runs-on: self-hosted
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4

	- name: Setup Python
	uses: actions/setup-python@v4
	with:
	python-version: '3.10'

	- name: Install uv
	uses: astral-sh/setup-uv@v3
	with:
	version: latest

	- name: Setup FreeSurfer environment
	run: \|
	# Add FreeSurfer to PATH
	export PATH=$FREESURFER_HOME:$PATH

	# Source FreeSurfer setup script if it exists
	if [ -f "$FREESURFER_HOME/SetUpFreeSurfer.sh" ]; then
	source $FREESURFER_HOME/SetUpFreeSurfer.sh
	fi

	# Check if FreeSurfer is available
	which mideface \|\| echo "mideface not found in PATH"
	echo "FREESURFER_HOME: $FREESURFER_HOME"
	echo "PATH: $PATH"

	- name: Build package with uv
	run: \|
	uv build

	- name: Create output directory
	run: \|
	mkdir -p data_defaced

	- name: Run petdeface on test data with uv run
	run: \|
	uv run --with dist/*.whl petdeface petdeface/data/ data_defaced/ participant --participant_label sub-01

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