Update QC report; minor bugfixes for workflow #10

	name: Run petdeface on test data

	on:
	workflow_dispatch:
	push:
	branches: [ main, dev ]
	paths:
	- 'petdeface/**'
	- 'pyproject.toml'
	- 'uv.lock'
	- '.github/workflows/run_on_test_data.yaml'
	pull_request_target:
	branches: [ main, dev ]
	types: [opened, synchronize, reopened]
	paths:
	- 'petdeface/**'
	- 'pyproject.toml'
	- 'uv.lock'
	- '.github/workflows/run_on_test_data.yaml'
	env:
	FREESURFER_HOME: "/usr/local/freesurfer/7.4.1"
	jobs:
	run-petdeface-on-data:
	runs-on: self-hosted
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4

	- name: Setup Python
	uses: actions/setup-python@v4
	with:
	python-version: '3.10'

	- name: Install uv
	uses: astral-sh/setup-uv@v3
	with:
	version: latest

	- name: Build package with uv
	run: \|
	uv build

	- name: Create output directory
	run: \|
	mkdir -p data_defaced

	- name: Run petdeface on test data with uv run
	run: \|
	# Set FreeSurfer environment for this step
	export FREESURFER_HOME="/usr/local/freesurfer/7.4.1"
	export PATH="$FREESURFER_HOME/bin:$PATH"

	# Source FreeSurfer setup if available
	if [ -f "$FREESURFER_HOME/SetUpFreeSurfer.sh" ]; then
	source "$FREESURFER_HOME/SetUpFreeSurfer.sh"
	fi

	# Run petdeface with FreeSurfer environment
	uv run --with dist/*.whl petdeface petdeface/data/ data_defaced/ participant --participant_label sub-01

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