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refactor to use BIDSLayoutIndexer across entire pipeline (#58)
* refactor to use BIDSLayoutIndexer across project * added test for excluding subjects * added 'second' subject to test exclusions
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7 files changed

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7 files changed

+471
-26
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‎data/participants.tsv‎

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participant_id height weight age gender
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sub-01 178 58 28 male
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sub-02 178 58 28 male

‎data/sub-02/ses-baseline/anat/sub-02_ses-baseline_T1w.json‎

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"ImagingFrequency": 123.254,
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"Manufacturer": "Siemens",
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"ManufacturersModelName": "Prisma_fit",
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"InstitutionName": "Rigshospitalet",
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"InstitutionalDepartmentName": "Rontgen",
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"InstitutionAddress": "Blegdamsvej 9,Kobenhavn,District,DK,DK-2100",
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"DeviceSerialNumber": "67006",
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"StationName": "MN213418",
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"BodyPartExamined": "HEAD",
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"PatientPosition": "HFS",
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"ProcedureStepDescription": "MR cerebrum",
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"SoftwareVersions": "syngo MR D13D",
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"MRAcquisitionType": "3D",
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"SeriesDescription": "t1_mpr_3d_sag_p2_iso_Siemens",
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"ProtocolName": "t1_mpr_3d_sag_p2_iso_Siemens",
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"ScanningSequence": "GR\\IR",
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"SequenceVariant": "SK\\SP\\MP",
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"ScanOptions": "IR",
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"SequenceName": "*tfl3d1rs16ns",
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"ImageType": ["ORIGINAL", "PRIMARY", "M", "NORM", "DIS3D", "DIS2D"],
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"SeriesNumber": 3,
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"AcquisitionTime": "15:31:52.362500",
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"AcquisitionNumber": 1,
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}

‎data/sub-02/ses-baseline/anat/sub-02_ses-baseline_T1w.nii‎

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‎data/sub-02/ses-baseline/pet/sub-02_ses-baseline_pet.json‎

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‎data/sub-02/ses-baseline/pet/sub-02_ses-baseline_pet.nii.gz‎

46.6 MB
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