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remove debug and hardcoded paths
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tests/test_dir_layouts.py

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@@ -136,17 +136,10 @@ def test_participant_exclusion():
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"""Test that participant exclusion works correctly by excluding sub-02"""
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with tempfile.TemporaryDirectory() as temp_dir:
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test_dir = Path(temp_dir)
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print(f"DEBUG: Test temp directory: {test_dir}")
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# Create the test directory and copy our data
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shutil.copytree(data_dir, test_dir / "participant_exclusion")
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# Set FreeSurfer environment variables
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import os
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os.environ["FREESURFER_HOME"] = "/Applications/freesurfer/7.4.1"
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os.environ["SUBJECTS_DIR"] = "/Applications/freesurfer/7.4.1/subjects"
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# run petdeface on the copied dataset, excluding sub-02
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petdeface = PetDeface(
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test_dir / "participant_exclusion",
@@ -189,9 +182,6 @@ def test_participant_exclusion():
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sub01_defacemasks = list(derivatives_dir.glob("**/sub-01*defacemask*"))
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sub01_lta_files = list(derivatives_dir.glob("**/sub-01*.lta"))
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print(f"DEBUG: sub-01 defacemasks found: {len(sub01_defacemasks)}")
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print(f"DEBUG: sub-01 lta files found: {len(sub01_lta_files)}")
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assert (
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len(sub01_defacemasks) > 0
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), "sub-01 should have been processed and have defacemasks"

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