diff --git a/petdeface/petdeface.py b/petdeface/petdeface.py
index 278c38e..d29247a 100755
--- a/petdeface/petdeface.py
+++ b/petdeface/petdeface.py
@@ -24,6 +24,7 @@
 from niworkflows.utils.misc import check_valid_fs_license
 
 from petutils.petutils import collect_anat_and_pet
+from importlib.metadata import version
 
 
 try:
@@ -42,43 +43,27 @@
     pathlib.Path(__file__).parent.parent.absolute(),
 ]
 
-__version__ = "unable to locate version number in pyproject.toml"
+__version__ = "unable to locate version number"
 # we use the default version at the time of this writing, but the most current version
 # can be found in the pyproject.toml file under the [tool.bids] section
 __bids_version__ = "1.8.0"
 
 
-# search for toml file
-for place in places_to_look:
-    for root, folders, files in os.walk(place):
-        for file in files:
-            if file.endswith("pyproject.toml") and "petdeface" in os.path.join(
-                root, file
-            ):
-                toml_file = os.path.join(root, file)
-
-                with open(toml_file, "r") as f:
-                    for line in f.readlines():
-                        if (
-                            "version" in line
-                            and len(line.split("=")) > 1
-                            and "bids_version" not in line
-                        ):
+if __version__ == "unable to locate version number":
+    # we try to load the version using import lib
+    try:
+        __version__ = version(__package__)
+    except ValueError:
+        # if we can't load the version using importlib we try to load it from the pyproject.toml
+        for place in places_to_look:
+            try:
+                with open(place / "pyproject.toml") as f:
+                    for line in f:
+                        if "version" in line and "bid" not in line.lower():
                             __version__ = line.split("=")[1].strip().replace('"', "")
-                        if "bids_version" in line and len(line.split("=")) > 1:
-                            __bids_version__ = (
-                                line.split("=")[1].strip().replace('"', "")
-                            )
-                # if the version number is found and is formatted  with major.minor.patch formating we can break
-                # we check the version with a regex expression to see if all of the parts are there
-                if re.match(r"\d+\.\d+\.\d+", __version__):
-                    break
-
-            if __version__ != "unable to locate version number in pyproject.toml":
-                # we try to load the version using import lib
-                __version__ = importlib.metadata.version("petdeface")
-                if re.match(r"\d+\.\d+\.\d+", __version__):
-                    break
+                            break
+            except FileNotFoundError:
+                pass
 
 
 def locate_freesurfer_license():
@@ -231,9 +216,7 @@ def deface(args: Union[dict, argparse.Namespace]) -> None:
         # right side of the sub- string as the subject label
         if any("sub-" in subject for subject in subjects):
             print("One or more subject contains sub- string")
-        subjects = [
-            subject.replace("sub-", "") for subject in subjects if "sub-" in subject
-        ]
+        subjects = [subject.replace("sub-", "") for subject in subjects]
         # raise error if a supplied subject is not contained in the dataset
         participants = collect_participants(
             args.bids_dir, bids_validate=~args.skip_bids_validator
@@ -257,7 +240,9 @@ def deface(args: Union[dict, argparse.Namespace]) -> None:
             subject.replace("sub-", "") for subject in args.participant_label_exclude
         ]
         subjects = [
-            subject for subject in subjects if subject not in args.participant_label_exclude
+            subject
+            for subject in subjects
+            if subject not in args.participant_label_exclude
         ]
 
         print(f"Subjects remaining in the defacing workflow: {subjects}")
@@ -277,7 +262,7 @@ def deface(args: Union[dict, argparse.Namespace]) -> None:
                 args.bids_dir,
                 preview_pics=args.preview_pics,
                 anat_only=args.anat_only,
-                session=args.session_label,
+                session_label=args.session_label,
                 session_label_exclude=args.session_label_exclude,
             )
         except FileNotFoundError:
@@ -305,7 +290,7 @@ def init_single_subject_wf(
     output_dir: pathlib.Path = None,
     preview_pics=False,
     anat_only=False,
-    session=[],
+    session_label=[],
     session_label_exclude=[],
 ) -> Workflow:
     """
@@ -343,10 +328,10 @@ def init_single_subject_wf(
 
     # we combine the sessions to include and exclude into a single set of sessions to exclude from
     # the set of all sessions
-    if session:
+    if session_label:
         sessions_to_exclude = list(
             set(bids_data.get_sessions())
-            - (set(bids_data.get_sessions()) & set(session))
+            - (set(bids_data.get_sessions()) & set(session_label))
             | set(session_label_exclude)
         )
     else:
@@ -768,7 +753,7 @@ def __init__(
         placement="adjacent",
         preview_pics=True,
         participant_label_exclude=[],
-        session=[],
+        session_label=[],
         session_label_exclude=[],
     ):
         self.bids_dir = bids_dir
@@ -781,7 +766,7 @@ def __init__(
         self.skip_bids_validator = skip_bids_validator
         self.preview_pics = preview_pics
         self.participant_label_exclude = participant_label_exclude
-        self.session = session
+        self.session_label = session_label
         self.session_label_exclude = session_label_exclude
 
         # check if freesurfer license is valid
@@ -813,7 +798,7 @@ def run(self):
                 "remove_existing": self.remove_existing,
                 "preview_pics": self.preview_pics,
                 "participant_label_exclude": self.participant_label_exclude,
-                "session": self.session,
+                "session_label": self.session_label,
                 "session_label_exclude": self.session_label_exclude,
             }
         )
@@ -1133,7 +1118,7 @@ def main():  # noqa: max-complexity: 12
             placement=args.placement,
             preview_pics=args.preview_pics,
             participant_label_exclude=args.participant_label_exclude,
-            session=args.session_label,
+            session_label=args.session_label,
             session_label_exclude=args.session_label_exclude,
         )
         petdeface.run()
diff --git a/poetry.lock b/poetry.lock
index 53d0c45..a92396a 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -85,13 +85,13 @@ bidsschematools = ">=0.10"
 
 [[package]]
 name = "bidsschematools"
-version = "0.11.3.post1"
+version = "0.11.3.post3"
 description = "Python tools for working with the BIDS schema."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "bidsschematools-0.11.3.post1-py3-none-any.whl", hash = "sha256:9bb0ca919ac9bcb18dc6bb8df0c7b8073dd2a67d47fba887de392608a3973754"},
-    {file = "bidsschematools-0.11.3.post1.tar.gz", hash = "sha256:2c167a5a339006b8bb127ee902282976e218304f697fa19df6b2a253a0f12830"},
+    {file = "bidsschematools-0.11.3.post3-py3-none-any.whl", hash = "sha256:37bc00f9c31c48dca0bd8bf3825f8f5026b499b22fe6c553843255b7fd8653db"},
+    {file = "bidsschematools-0.11.3.post3.tar.gz", hash = "sha256:18630d0045bf83205a76e56eccf379fbd8661d8a7e5d02701bc29005e56429f7"},
 ]
 
 [package.dependencies]
@@ -331,76 +331,65 @@ files = [
 
 [[package]]
 name = "contourpy"
-version = "1.3.0"
+version = "1.3.1"
 description = "Python library for calculating contours of 2D quadrilateral grids"
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.10"
 files = [
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 [package.dependencies]
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 ]
 
 [package.extras]
@@ -747,13 +738,13 @@ numpy = ">=1.19.3"
 
 [[package]]
 name = "identify"
-version = "2.6.1"
+version = "2.6.2"
 description = "File identification library for Python"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
-    {file = "identify-2.6.1-py2.py3-none-any.whl", hash = "sha256:53863bcac7caf8d2ed85bd20312ea5dcfc22226800f6d6881f232d861db5a8f0"},
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+    {file = "identify-2.6.2.tar.gz", hash = "sha256:fab5c716c24d7a789775228823797296a2994b075fb6080ac83a102772a98cbd"},
 ]
 
 [package.extras]
@@ -1490,36 +1481,38 @@ test = ["coverage", "pytest (>=6.0.0)", "pytest-cov"]
 
 [[package]]
 name = "nipype"
-version = "1.8.6"
+version = "1.9.1"
 description = "Neuroimaging in Python: Pipelines and Interfaces"
 optional = false
-python-versions = ">= 3.7"
+python-versions = ">=3.9"
 files = [
-    {file = "nipype-1.8.6-py3-none-any.whl", hash = "sha256:e404ba7781d2418c107107436ec509348137651fca56e5b3c9f9cb5235af6bd4"},
-    {file = "nipype-1.8.6.tar.gz", hash = "sha256:977b1315e8f70f94163ec07e31e5571be83f2add6023141c5a06ac700126f8d1"},
+    {file = "nipype-1.9.1-py3-none-any.whl", hash = "sha256:911b76e4fb61bb05c62df2865c3ca0db584536dd21542195749ed447334e7dd9"},
+    {file = "nipype-1.9.1.tar.gz", hash = "sha256:6404848ed2e86ab43536e10c245e40d9e4ebad201329beefce8892b7f5496d0b"},
 ]
 
 [package.dependencies]
+acres = "*"
 click = ">=6.6.0"
-etelemetry = ">=0.2.0"
+etelemetry = ">=0.3.1"
 filelock = ">=3.0.0"
-looseversion = "*"
-networkx = ">=2.0"
-nibabel = ">=2.1.0"
-numpy = ">=1.17"
+looseversion = "!=1.2"
+networkx = ">=2.5"
+nibabel = ">=3.0"
+numpy = ">=1.21"
 packaging = "*"
 prov = ">=1.5.2"
+puremagic = "*"
 pydot = ">=1.2.3"
 python-dateutil = ">=2.2"
 rdflib = ">=5.0.0"
-scipy = ">=0.14"
+scipy = ">=1.8"
 simplejson = ">=3.8.0"
-traits = ">=4.6,<5.0 || >5.0,<6.4"
+traits = ">=6.2"
 
 [package.extras]
-all = ["GitPython", "black", "codecov", "coverage (<5)", "datalad", "dipy", "duecredit", "fuzzywuzzy", "ipython", "matplotlib", "nbsphinx", "nilearn", "nipy", "nitime", "paramiko", "psutil (>=5.0)", "pybids (>=0.7.0)", "pytest", "pytest-cov", "pytest-doctestplus", "pytest-env", "pytest-timeout", "sphinx", "sphinx (>=2.1.2)", "sphinx-argparse", "sphinxcontrib-apidoc", "xvfbwrapper"]
+all = ["GitPython", "black", "coverage (>=5.2.1)", "datalad", "dipy", "duecredit", "fuzzywuzzy", "ipython", "matplotlib", "nbsphinx", "nilearn", "nipy", "nitime", "pandas (>=1.5.0)", "paramiko", "psutil (>=5.0)", "pybids (>=0.7.0)", "pytest (>=6)", "pytest-cov (>=2.11)", "pytest-doctestplus", "pytest-env", "pytest-timeout (>=1.4)", "pytest-xdist (>=2.5)", "sphinx (>=2.1.2)", "sphinx (>=7)", "sphinx-argparse", "sphinxcontrib-apidoc", "xvfbwrapper"]
 data = ["datalad"]
-dev = ["black", "codecov", "coverage (<5)", "dipy", "ipython", "matplotlib", "nbsphinx", "pytest", "pytest-cov", "pytest-doctestplus", "pytest-env", "pytest-timeout", "sphinx", "sphinx (>=2.1.2)", "sphinx-argparse", "sphinxcontrib-apidoc"]
+dev = ["black", "coverage (>=5.2.1)", "dipy", "ipython", "matplotlib", "nbsphinx", "pandas (>=1.5.0)", "pytest (>=6)", "pytest-cov (>=2.11)", "pytest-doctestplus", "pytest-env", "pytest-timeout (>=1.4)", "pytest-xdist (>=2.5)", "sphinx (>=2.1.2)", "sphinx (>=7)", "sphinx-argparse", "sphinxcontrib-apidoc"]
 doc = ["dipy", "ipython", "matplotlib", "nbsphinx", "sphinx (>=2.1.2)", "sphinx-argparse", "sphinxcontrib-apidoc"]
 duecredit = ["duecredit"]
 maint = ["GitPython", "fuzzywuzzy"]
@@ -1528,30 +1521,32 @@ profiler = ["psutil (>=5.0)"]
 pybids = ["pybids (>=0.7.0)"]
 specs = ["black"]
 ssh = ["paramiko"]
-tests = ["codecov", "coverage (<5)", "pytest", "pytest-cov", "pytest-doctestplus", "pytest-env", "pytest-timeout", "sphinx"]
+tests = ["coverage (>=5.2.1)", "pandas (>=1.5.0)", "pytest (>=6)", "pytest-cov (>=2.11)", "pytest-doctestplus", "pytest-env", "pytest-timeout (>=1.4)", "pytest-xdist (>=2.5)", "sphinx (>=7)"]
 xvfbwrapper = ["xvfbwrapper"]
 
 [[package]]
 name = "nitransforms"
-version = "21.0.0"
+version = "24.1.0"
 description = "NiTransforms -- Neuroimaging spatial transforms in Python."
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.9"
 files = [
-    {file = "nitransforms-21.0.0-py3-none-any.whl", hash = "sha256:3341a3ac73b46d358c8ff0b9e241142e4b360b6a4750d718ccad024dfe8be3a6"},
-    {file = "nitransforms-21.0.0.tar.gz", hash = "sha256:9e326a1ea5d5c6577219f99d33c1a680a760213e243182f370ce7e6b2476103a"},
+    {file = "nitransforms-24.1.0-py3-none-any.whl", hash = "sha256:b5d1aec3a301cf02064d498afcb30edc36c14a6afc0426b8d12c9a3c8ab2e064"},
+    {file = "nitransforms-24.1.0.tar.gz", hash = "sha256:40e39cdc0fe80039e33adc602ea02bc17222930343029558e321c062df443515"},
 ]
 
 [package.dependencies]
-h5py = "*"
-nibabel = ">=3.0"
-numpy = "*"
-scipy = "*"
+h5py = ">=3.9"
+nibabel = ">=4.0"
+numpy = ">=1.21"
+scipy = ">=1.8"
 
 [package.extras]
-all = ["codecov", "pytest", "pytest-cov"]
-test = ["codecov", "pytest", "pytest-cov"]
-tests = ["codecov", "pytest", "pytest-cov"]
+all = ["nitransforms[test]"]
+niftiext = ["lxml (>=4.6)"]
+niftiexts = ["nitransforms[niftiext]"]
+test = ["coverage[toml] (>=5.2.1)", "nitransforms[niftiext]", "pytest (>=6)", "pytest-cov (>=2.11)", "pytest-env", "pytest-xdist (>=2.5)"]
+tests = ["nitransforms[test]"]
 
 [[package]]
 name = "niworkflows"
@@ -1969,6 +1964,17 @@ rdflib = ">=4.2.1"
 [package.extras]
 dot = ["pydot (>=1.2.0)"]
 
+[[package]]
+name = "puremagic"
+version = "1.28"
+description = "Pure python implementation of magic file detection"
+optional = false
+python-versions = "*"
+files = [
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+]
+
 [[package]]
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 version = "0.16.5"
@@ -2700,13 +2706,13 @@ test = ["cython (>=3.0)", "defusedxml (>=0.7.1)", "pytest (>=8.0)", "setuptools
 
 [[package]]
 name = "sphinx-rtd-theme"
-version = "3.0.1"
+version = "3.0.2"
 description = "Read the Docs theme for Sphinx"
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
@@ -2994,31 +3000,31 @@ zarr = ["fsspec", "zarr"]
 
 [[package]]
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-version = "2.0.2"
+version = "2.1.0"
 description = "A lil' TOML parser"
 optional = false
 python-versions = ">=3.8"
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 ]
 
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-version = "4.67.0"
+version = "4.67.1"
 description = "Fast, Extensible Progress Meter"
 optional = false
 python-versions = ">=3.7"
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 [package.dependencies]
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 [package.extras]
-dev = ["pytest (>=6)", "pytest-cov", "pytest-timeout", "pytest-xdist"]
+dev = ["nbval", "pytest (>=6)", "pytest-asyncio (>=0.24)", "pytest-cov", "pytest-timeout"]
 discord = ["requests"]
 notebook = ["ipywidgets (>=6)"]
 slack = ["slack-sdk"]
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 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.10, <4.0"
 content-hash = "d13eaeabc8d858d5540db6627dec495e106ff940245e5c50b9b2997e6b163b93"
-
diff --git a/pyproject.toml b/pyproject.toml
index 01376b7..f473123 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "petdeface"
-version = "0.2.1"
+version = "0.2.2"
 description = "A nipype PET and MR defacing pipeline for BIDS datasets utilizing FreeSurfer's MiDeFace."
 authors = ["Martin Nørgaard <martin.noergaard@nru.dk>", "Anthony Galassi <28850131+bendhouseart@users.noreply.github.com>", "Murat Bilgel <bilgelm@gmail.com>"]
 license = "MIT"