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openpipeline_qc 0.3.0

MAJOR CHANGES

  • Bump OpenPipeline dependency to v4.1.0, relevant updates include major changes to memory consumption and runtimes for and support for MuData encoded in Zarr format for calculate_qc_metrics (PR #24).

  • Bump CraftBox dependency to v0.3.2, relevant updates include support for symbolic link preservation for move_files_to_directory (PR #24).

  • Bump Viash to 0.9.7 (PR #24).

  • Bump anndata to 0.12.16 (PR #24).

  • Bump mudata to 0.3.8 (PR #24).

  • Testing: bump viashpy to 0.10.0 (PR #24).

openpipeline_qc 0.2.2

BUG FIX

  • src/ingestion_qc/h5mu_to_qc_json: Use float32 instead of float16 for CosMx staining metrics to prevent overflow to infinity (PR #17).

openpipeline_qc 0.2.0

NEW FEATURES

  • Add support for CosMx data in the QC Reporting workflow (PR #12).

MINOR CHANGES

  • Added support for Visium data ingestion and QC reporting (PR #16).

openpipeline_qc 0.2.0

MINOR CHANGES

  • src/workflows/generate_qc_report: Add min and max constraints to --max_samples_per_report, to limit the number of samples per report between 1 and 20 (PR #11).

  • Update openpipeline dependency to v4.0.0 and siqc to version v0.2.0 (PR #15).

openpipeline_qc 0.1.1

MINOR CHANGES

  • Add a README (PR #9).

openpipeline_qc 0.1.0

Initial release containing a QC Reporting workflow for Xenium or CellRanger Multi ingested data, with corresponding components.