https://github.com/openpipelines-bio/openpipeline_spatial/blob/main/src/workflows/ingestion/spaceranger_mapping/config.vsh.yaml:
...
- name: --image
type: file
required: false
description: |
H&E or fluorescence microscope image in TIFF or JPG format.
Required for standard Visium workflow, optional when using --cytaimage for CytAssist workflow.
example: "brightfield.tif"
...
- name: --slide
type: string
description: Visium slide serial number (e.g., 'V10J25-015')
required: false
example: "V10J25-015"
- name: --area
type: string
description: Visium capture area identifier (e.g., 'A1')
required: false
example: "A1"
https://github.com/openpipelines-bio/openpipeline_spatial/blob/main/src/workflows/ingestion/spaceranger_mapping/config.vsh.yaml:
... - name: --image type: file required: false description: | H&E or fluorescence microscope image in TIFF or JPG format. Required for standard Visium workflow, optional when using --cytaimage for CytAssist workflow. example: "brightfield.tif" ... - name: --slide type: string description: Visium slide serial number (e.g., 'V10J25-015') required: false example: "V10J25-015" - name: --area type: string description: Visium capture area identifier (e.g., 'A1') required: false example: "A1"