diff --git a/components/modules/annotate/celltypist.qmd b/components/modules/annotate/celltypist.qmd
index 6509fc38..d0a5285e 100644
--- a/components/modules/annotate/celltypist.qmd
+++ b/components/modules/annotate/celltypist.qmd
@@ -14,7 +14,7 @@ ID: `celltypist`
 Namespace: `annotate`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/annotate/celltypist/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/annotate/celltypist/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/annotate/celltypist/main.nf \
   --help
 ```
@@ -79,7 +79,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/annotate/celltypist/main.nf \
   -params-file params.yaml
diff --git a/components/modules/annotate/onclass.qmd b/components/modules/annotate/onclass.qmd
index 6a1ee7c0..e2a8771a 100644
--- a/components/modules/annotate/onclass.qmd
+++ b/components/modules/annotate/onclass.qmd
@@ -14,7 +14,7 @@ ID: `onclass`
 Namespace: `annotate`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/annotate/onclass/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/annotate/onclass/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -31,7 +31,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/annotate/onclass/main.nf \
   --help
 ```
@@ -81,7 +81,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/annotate/onclass/main.nf \
   -params-file params.yaml
diff --git a/components/modules/annotate/popv.qmd b/components/modules/annotate/popv.qmd
index c1a122b7..3509add5 100644
--- a/components/modules/annotate/popv.qmd
+++ b/components/modules/annotate/popv.qmd
@@ -14,7 +14,7 @@ ID: `popv`
 Namespace: `annotate`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/annotate/popv/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/annotate/popv/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/annotate/popv/main.nf \
   --help
 ```
@@ -70,7 +70,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/annotate/popv/main.nf \
   -params-file params.yaml
diff --git a/components/modules/annotate/random_forest_annotation.qmd b/components/modules/annotate/random_forest_annotation.qmd
index f1062564..fddea8d0 100644
--- a/components/modules/annotate/random_forest_annotation.qmd
+++ b/components/modules/annotate/random_forest_annotation.qmd
@@ -14,7 +14,7 @@ ID: `random_forest_annotation`
 Namespace: `annotate`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/annotate/random_forest_annotation/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/annotate/random_forest_annotation/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/annotate/random_forest_annotation/main.nf \
   --help
 ```
@@ -78,7 +78,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/annotate/random_forest_annotation/main.nf \
   -params-file params.yaml
diff --git a/components/modules/annotate/scanvi.qmd b/components/modules/annotate/scanvi.qmd
index b91e61c8..901e97ec 100644
--- a/components/modules/annotate/scanvi.qmd
+++ b/components/modules/annotate/scanvi.qmd
@@ -14,7 +14,7 @@ ID: `scanvi`
 Namespace: `annotate`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/annotate/scanvi/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/annotate/scanvi/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/annotate/scanvi/main.nf \
   --help
 ```
@@ -80,7 +80,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/annotate/scanvi/main.nf \
   -params-file params.yaml
diff --git a/components/modules/annotate/svm_annotation.qmd b/components/modules/annotate/svm_annotation.qmd
index c0977143..980bf80a 100644
--- a/components/modules/annotate/svm_annotation.qmd
+++ b/components/modules/annotate/svm_annotation.qmd
@@ -14,7 +14,7 @@ ID: `svm_annotation`
 Namespace: `annotate`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/annotate/svm_annotation/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/annotate/svm_annotation/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/annotate/svm_annotation/main.nf \
   --help
 ```
@@ -77,7 +77,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/annotate/svm_annotation/main.nf \
   -params-file params.yaml
diff --git a/components/modules/cluster/leiden.qmd b/components/modules/cluster/leiden.qmd
index cce56ac4..9d1efc53 100644
--- a/components/modules/cluster/leiden.qmd
+++ b/components/modules/cluster/leiden.qmd
@@ -14,7 +14,7 @@ ID: `leiden`
 Namespace: `cluster`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/cluster/leiden/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/cluster/leiden/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -39,7 +39,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/cluster/leiden/main.nf \
   --help
 ```
@@ -66,7 +66,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/cluster/leiden/main.nf \
   -params-file params.yaml
diff --git a/components/modules/compression/compress_h5mu.qmd b/components/modules/compression/compress_h5mu.qmd
index dae822ca..dc4a7af1 100644
--- a/components/modules/compression/compress_h5mu.qmd
+++ b/components/modules/compression/compress_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `compress_h5mu`
 Namespace: `compression`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/compression/compress_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/compression/compress_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -31,7 +31,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/compression/compress_h5mu/main.nf \
   --help
 ```
@@ -54,7 +54,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/compression/compress_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/compression/tar_extract.qmd b/components/modules/compression/tar_extract.qmd
index 026aa793..d9e5a9be 100644
--- a/components/modules/compression/tar_extract.qmd
+++ b/components/modules/compression/tar_extract.qmd
@@ -14,7 +14,7 @@ ID: `tar_extract`
 Namespace: `compression`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/compression/tar_extract/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/compression/tar_extract/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/compression/tar_extract/main.nf \
   --help
 ```
@@ -54,7 +54,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/compression/tar_extract/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/from_10xh5_to_h5mu.qmd b/components/modules/convert/from_10xh5_to_h5mu.qmd
index 06d10758..a1bfb331 100644
--- a/components/modules/convert/from_10xh5_to_h5mu.qmd
+++ b/components/modules/convert/from_10xh5_to_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `from_10xh5_to_h5mu`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/convert/from_10xh5_to_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/convert/from_10xh5_to_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/convert/from_10xh5_to_h5mu/main.nf \
   --help
 ```
@@ -61,7 +61,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/from_10xh5_to_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/from_10xmtx_to_h5mu.qmd b/components/modules/convert/from_10xmtx_to_h5mu.qmd
index 9a4db7db..69f3a1b8 100644
--- a/components/modules/convert/from_10xmtx_to_h5mu.qmd
+++ b/components/modules/convert/from_10xmtx_to_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `from_10xmtx_to_h5mu`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/convert/from_10xmtx_to_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/convert/from_10xmtx_to_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/convert/from_10xmtx_to_h5mu/main.nf \
   --help
 ```
@@ -53,7 +53,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/from_10xmtx_to_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/from_bd_to_10x_molecular_barcode_tags.qmd b/components/modules/convert/from_bd_to_10x_molecular_barcode_tags.qmd
index d6664739..a331b19a 100644
--- a/components/modules/convert/from_bd_to_10x_molecular_barcode_tags.qmd
+++ b/components/modules/convert/from_bd_to_10x_molecular_barcode_tags.qmd
@@ -14,7 +14,7 @@ ID: `from_bd_to_10x_molecular_barcode_tags`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/convert/from_bd_to_10x_molecular_barcode_tags/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/convert/from_bd_to_10x_molecular_barcode_tags/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/main.nf \
   --help
 ```
@@ -54,7 +54,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/from_bdrhap_to_h5mu.qmd b/components/modules/convert/from_bdrhap_to_h5mu.qmd
index cd494664..ffe6c3ad 100644
--- a/components/modules/convert/from_bdrhap_to_h5mu.qmd
+++ b/components/modules/convert/from_bdrhap_to_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `from_bdrhap_to_h5mu`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/convert/from_bdrhap_to_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/convert/from_bdrhap_to_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/convert/from_bdrhap_to_h5mu/main.nf \
   --help
 ```
@@ -58,7 +58,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/from_bdrhap_to_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/from_cellranger_multi_to_h5mu.qmd b/components/modules/convert/from_cellranger_multi_to_h5mu.qmd
index 87846fec..dc69ff11 100644
--- a/components/modules/convert/from_cellranger_multi_to_h5mu.qmd
+++ b/components/modules/convert/from_cellranger_multi_to_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `from_cellranger_multi_to_h5mu`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/convert/from_cellranger_multi_to_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/convert/from_cellranger_multi_to_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -44,7 +44,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/convert/from_cellranger_multi_to_h5mu/main.nf \
   --help
 ```
@@ -69,7 +69,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/from_cellranger_multi_to_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/from_h5ad_to_h5mu.qmd b/components/modules/convert/from_h5ad_to_h5mu.qmd
index 784bd327..9b13c0c5 100644
--- a/components/modules/convert/from_h5ad_to_h5mu.qmd
+++ b/components/modules/convert/from_h5ad_to_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `from_h5ad_to_h5mu`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/convert/from_h5ad_to_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/convert/from_h5ad_to_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/convert/from_h5ad_to_h5mu/main.nf \
   --help
 ```
@@ -54,7 +54,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/from_h5ad_to_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/from_h5ad_to_seurat.qmd b/components/modules/convert/from_h5ad_to_seurat.qmd
index 3bc93cb0..9d18ab5c 100644
--- a/components/modules/convert/from_h5ad_to_seurat.qmd
+++ b/components/modules/convert/from_h5ad_to_seurat.qmd
@@ -14,7 +14,7 @@ ID: `from_h5ad_to_seurat`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/convert/from_h5ad_to_seurat/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/convert/from_h5ad_to_seurat/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/convert/from_h5ad_to_seurat/main.nf \
   --help
 ```
@@ -53,7 +53,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/from_h5ad_to_seurat/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/from_h5mu_to_h5ad.qmd b/components/modules/convert/from_h5mu_to_h5ad.qmd
index 7c07a1ce..ec095dd1 100644
--- a/components/modules/convert/from_h5mu_to_h5ad.qmd
+++ b/components/modules/convert/from_h5mu_to_h5ad.qmd
@@ -14,7 +14,7 @@ ID: `from_h5mu_to_h5ad`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/convert/from_h5mu_to_h5ad/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/convert/from_h5mu_to_h5ad/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/convert/from_h5mu_to_h5ad/main.nf \
   --help
 ```
@@ -54,7 +54,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/from_h5mu_to_h5ad/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/from_h5mu_to_seurat.qmd b/components/modules/convert/from_h5mu_to_seurat.qmd
index c8c5b47e..155e4c2f 100644
--- a/components/modules/convert/from_h5mu_to_seurat.qmd
+++ b/components/modules/convert/from_h5mu_to_seurat.qmd
@@ -14,7 +14,7 @@ ID: `from_h5mu_to_seurat`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/convert/from_h5mu_to_seurat/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/convert/from_h5mu_to_seurat/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -36,7 +36,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/convert/from_h5mu_to_seurat/main.nf \
   --help
 ```
@@ -58,7 +58,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/from_h5mu_to_seurat/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/velocyto_to_h5mu.qmd b/components/modules/convert/velocyto_to_h5mu.qmd
index 4ff8a593..a650870c 100644
--- a/components/modules/convert/velocyto_to_h5mu.qmd
+++ b/components/modules/convert/velocyto_to_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `velocyto_to_h5mu`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/velocity/velocyto_to_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/velocity/velocyto_to_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -32,7 +32,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/convert/velocyto_to_h5mu/main.nf \
   --help
 ```
@@ -64,7 +64,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/velocyto_to_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/correction/cellbender_remove_background.qmd b/components/modules/correction/cellbender_remove_background.qmd
index 0356c351..6d4b95bb 100644
--- a/components/modules/correction/cellbender_remove_background.qmd
+++ b/components/modules/correction/cellbender_remove_background.qmd
@@ -14,7 +14,7 @@ ID: `cellbender_remove_background`
 Namespace: `correction`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/correction/cellbender_remove_background/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/correction/cellbender_remove_background/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -35,7 +35,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/correction/cellbender_remove_background/main.nf \
   --help
 ```
@@ -101,7 +101,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/correction/cellbender_remove_background/main.nf \
   -params-file params.yaml
diff --git a/components/modules/correction/cellbender_remove_background_v0_2.qmd b/components/modules/correction/cellbender_remove_background_v0_2.qmd
index 9bdea80f..67577ce3 100644
--- a/components/modules/correction/cellbender_remove_background_v0_2.qmd
+++ b/components/modules/correction/cellbender_remove_background_v0_2.qmd
@@ -14,7 +14,7 @@ ID: `cellbender_remove_background_v0_2`
 Namespace: `correction`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/correction/cellbender_remove_background_v0_2/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/correction/cellbender_remove_background_v0_2/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -35,7 +35,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/correction/cellbender_remove_background_v0_2/main.nf \
   --help
 ```
@@ -83,7 +83,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/correction/cellbender_remove_background_v0_2/main.nf \
   -params-file params.yaml
diff --git a/components/modules/dataflow/concatenate_h5mu.qmd b/components/modules/dataflow/concatenate_h5mu.qmd
index fc7daa07..41019d93 100644
--- a/components/modules/dataflow/concatenate_h5mu.qmd
+++ b/components/modules/dataflow/concatenate_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `concatenate_h5mu`
 Namespace: `dataflow`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/dataflow/concatenate_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/dataflow/concatenate_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/dataflow/concatenate_h5mu/main.nf \
   --help
 ```
@@ -58,7 +58,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/dataflow/concatenate_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/dataflow/merge.qmd b/components/modules/dataflow/merge.qmd
index 450cbcad..5d03a2ef 100644
--- a/components/modules/dataflow/merge.qmd
+++ b/components/modules/dataflow/merge.qmd
@@ -14,7 +14,7 @@ ID: `merge`
 Namespace: `dataflow`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/dataflow/merge/config.vsh.yml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/dataflow/merge/config.vsh.yml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/dataflow/merge/main.nf \
   --help
 ```
@@ -53,7 +53,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/dataflow/merge/main.nf \
   -params-file params.yaml
diff --git a/components/modules/dataflow/split_h5mu.qmd b/components/modules/dataflow/split_h5mu.qmd
index ed27245f..6aea5b6c 100644
--- a/components/modules/dataflow/split_h5mu.qmd
+++ b/components/modules/dataflow/split_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `split_h5mu`
 Namespace: `dataflow`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/dataflow/split_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/dataflow/split_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -31,7 +31,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/dataflow/split_h5mu/main.nf \
   --help
 ```
@@ -63,7 +63,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/dataflow/split_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/dataflow/split_h5mu_train_test.qmd b/components/modules/dataflow/split_h5mu_train_test.qmd
index 2cf70b10..6f77e996 100644
--- a/components/modules/dataflow/split_h5mu_train_test.qmd
+++ b/components/modules/dataflow/split_h5mu_train_test.qmd
@@ -14,7 +14,7 @@ ID: `split_h5mu_train_test`
 Namespace: `dataflow`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/dataflow/split_h5mu_train_test/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/dataflow/split_h5mu_train_test/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/dataflow/split_h5mu_train_test/main.nf \
   --help
 ```
@@ -66,7 +66,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/dataflow/split_h5mu_train_test/main.nf \
   -params-file params.yaml
diff --git a/components/modules/dataflow/split_modalities.qmd b/components/modules/dataflow/split_modalities.qmd
index 80a8154e..7182e21f 100644
--- a/components/modules/dataflow/split_modalities.qmd
+++ b/components/modules/dataflow/split_modalities.qmd
@@ -14,7 +14,7 @@ ID: `split_modalities`
 Namespace: `dataflow`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/dataflow/split_modalities/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/dataflow/split_modalities/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -31,7 +31,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/dataflow/split_modalities/main.nf \
   --help
 ```
@@ -55,7 +55,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/dataflow/split_modalities/main.nf \
   -params-file params.yaml
diff --git a/components/modules/demux/bcl2fastq.qmd b/components/modules/demux/bcl2fastq.qmd
index b132bee0..f97f1f59 100644
--- a/components/modules/demux/bcl2fastq.qmd
+++ b/components/modules/demux/bcl2fastq.qmd
@@ -14,7 +14,7 @@ ID: `bcl2fastq`
 Namespace: `demux`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/demux/bcl2fastq/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/demux/bcl2fastq/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/demux/bcl2fastq/main.nf \
   --help
 ```
@@ -55,7 +55,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/demux/bcl2fastq/main.nf \
   -params-file params.yaml
diff --git a/components/modules/demux/bcl_convert.qmd b/components/modules/demux/bcl_convert.qmd
index b2e3c239..73d20f39 100644
--- a/components/modules/demux/bcl_convert.qmd
+++ b/components/modules/demux/bcl_convert.qmd
@@ -14,7 +14,7 @@ ID: `bcl_convert`
 Namespace: `demux`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/demux/bcl_convert/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/demux/bcl_convert/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -33,7 +33,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/demux/bcl_convert/main.nf \
   --help
 ```
@@ -62,7 +62,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/demux/bcl_convert/main.nf \
   -params-file params.yaml
diff --git a/components/modules/demux/cellranger_atac_mkfastq.qmd b/components/modules/demux/cellranger_atac_mkfastq.qmd
index e6c99fd5..26011037 100644
--- a/components/modules/demux/cellranger_atac_mkfastq.qmd
+++ b/components/modules/demux/cellranger_atac_mkfastq.qmd
@@ -14,7 +14,7 @@ ID: `cellranger_atac_mkfastq`
 Namespace: `demux`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/demux/cellranger_atac_mkfastq/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/demux/cellranger_atac_mkfastq/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/demux/cellranger_atac_mkfastq/main.nf \
   --help
 ```
@@ -58,7 +58,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/demux/cellranger_atac_mkfastq/main.nf \
   -params-file params.yaml
diff --git a/components/modules/demux/cellranger_mkfastq.qmd b/components/modules/demux/cellranger_mkfastq.qmd
index b68f1f2d..60b61bbd 100644
--- a/components/modules/demux/cellranger_mkfastq.qmd
+++ b/components/modules/demux/cellranger_mkfastq.qmd
@@ -14,7 +14,7 @@ ID: `cellranger_mkfastq`
 Namespace: `demux`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/demux/cellranger_mkfastq/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/demux/cellranger_mkfastq/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/demux/cellranger_mkfastq/main.nf \
   --help
 ```
@@ -54,7 +54,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/demux/cellranger_mkfastq/main.nf \
   -params-file params.yaml
diff --git a/components/modules/dimred/densmap.qmd b/components/modules/dimred/densmap.qmd
index 58e5ad60..bdf7d501 100644
--- a/components/modules/dimred/densmap.qmd
+++ b/components/modules/dimred/densmap.qmd
@@ -14,7 +14,7 @@ ID: `densmap`
 Namespace: `dimred`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/dimred/densmap/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/dimred/densmap/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/dimred/densmap/main.nf \
   --help
 ```
@@ -76,7 +76,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/dimred/densmap/main.nf \
   -params-file params.yaml
diff --git a/components/modules/dimred/lsi.qmd b/components/modules/dimred/lsi.qmd
index 6696099f..47c0b766 100644
--- a/components/modules/dimred/lsi.qmd
+++ b/components/modules/dimred/lsi.qmd
@@ -14,7 +14,7 @@ ID: `lsi`
 Namespace: `dimred`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/dimred/lsi/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/dimred/lsi/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/dimred/lsi/main.nf \
   --help
 ```
@@ -68,7 +68,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/dimred/lsi/main.nf \
   -params-file params.yaml
diff --git a/components/modules/dimred/pca.qmd b/components/modules/dimred/pca.qmd
index 01e74d2d..1eb07da7 100644
--- a/components/modules/dimred/pca.qmd
+++ b/components/modules/dimred/pca.qmd
@@ -14,7 +14,7 @@ ID: `pca`
 Namespace: `dimred`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/dimred/pca/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/dimred/pca/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/dimred/pca/main.nf \
   --help
 ```
@@ -61,7 +61,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/dimred/pca/main.nf \
   -params-file params.yaml
diff --git a/components/modules/dimred/tsne.qmd b/components/modules/dimred/tsne.qmd
index e3466c71..21a4321e 100644
--- a/components/modules/dimred/tsne.qmd
+++ b/components/modules/dimred/tsne.qmd
@@ -14,7 +14,7 @@ ID: `tsne`
 Namespace: `dimred`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/dimred/tsne/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/dimred/tsne/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/dimred/tsne/main.nf \
   --help
 ```
@@ -67,7 +67,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/dimred/tsne/main.nf \
   -params-file params.yaml
diff --git a/components/modules/dimred/umap.qmd b/components/modules/dimred/umap.qmd
index 75144352..777a7e4c 100644
--- a/components/modules/dimred/umap.qmd
+++ b/components/modules/dimred/umap.qmd
@@ -14,7 +14,7 @@ ID: `umap`
 Namespace: `dimred`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/dimred/umap/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/dimred/umap/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/dimred/umap/main.nf \
   --help
 ```
@@ -68,7 +68,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/dimred/umap/main.nf \
   -params-file params.yaml
diff --git a/components/modules/download/download_file.qmd b/components/modules/download/download_file.qmd
index 37cffea9..18303bea 100644
--- a/components/modules/download/download_file.qmd
+++ b/components/modules/download/download_file.qmd
@@ -14,7 +14,7 @@ ID: `download_file`
 Namespace: `download`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/download/download_file/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/download/download_file/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/download/download_file/main.nf \
   --help
 ```
@@ -53,7 +53,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/download/download_file/main.nf \
   -params-file params.yaml
diff --git a/components/modules/download/sync_test_resources.qmd b/components/modules/download/sync_test_resources.qmd
index 8e1cebc5..c7433dc3 100644
--- a/components/modules/download/sync_test_resources.qmd
+++ b/components/modules/download/sync_test_resources.qmd
@@ -14,7 +14,7 @@ ID: `sync_test_resources`
 Namespace: `download`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/download/sync_test_resources/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/download/sync_test_resources/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/download/sync_test_resources/main.nf \
   --help
 ```
@@ -60,7 +60,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/download/sync_test_resources/main.nf \
   -params-file params.yaml
diff --git a/components/modules/feature_annotation/align_query_reference.qmd b/components/modules/feature_annotation/align_query_reference.qmd
index 12a90118..91fa9def 100644
--- a/components/modules/feature_annotation/align_query_reference.qmd
+++ b/components/modules/feature_annotation/align_query_reference.qmd
@@ -14,7 +14,7 @@ ID: `align_query_reference`
 Namespace: `feature_annotation`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/feature_annotation/align_query_reference/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/feature_annotation/align_query_reference/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/feature_annotation/align_query_reference/main.nf \
   --help
 ```
@@ -88,7 +88,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/feature_annotation/align_query_reference/main.nf \
   -params-file params.yaml
diff --git a/components/modules/feature_annotation/highly_variable_features_scanpy.qmd b/components/modules/feature_annotation/highly_variable_features_scanpy.qmd
index 784d5fc6..b8a37386 100644
--- a/components/modules/feature_annotation/highly_variable_features_scanpy.qmd
+++ b/components/modules/feature_annotation/highly_variable_features_scanpy.qmd
@@ -14,7 +14,7 @@ ID: `highly_variable_features_scanpy`
 Namespace: `feature_annotation`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/feature_annotation/highly_variable_features_scanpy/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/feature_annotation/highly_variable_features_scanpy/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -37,7 +37,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/feature_annotation/highly_variable_features_scanpy/main.nf \
   --help
 ```
@@ -74,7 +74,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/feature_annotation/highly_variable_features_scanpy/main.nf \
   -params-file params.yaml
diff --git a/components/modules/feature_annotation/score_genes_cell_cycle_scanpy.qmd b/components/modules/feature_annotation/score_genes_cell_cycle_scanpy.qmd
index f6f707e1..b5bb866e 100644
--- a/components/modules/feature_annotation/score_genes_cell_cycle_scanpy.qmd
+++ b/components/modules/feature_annotation/score_genes_cell_cycle_scanpy.qmd
@@ -14,7 +14,7 @@ ID: `score_genes_cell_cycle_scanpy`
 Namespace: `feature_annotation`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/feature_annotation/score_genes_cell_cycle_scanpy/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/feature_annotation/score_genes_cell_cycle_scanpy/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -31,7 +31,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/feature_annotation/score_genes_cell_cycle_scanpy/main.nf \
   --help
 ```
@@ -75,7 +75,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/feature_annotation/score_genes_cell_cycle_scanpy/main.nf \
   -params-file params.yaml
diff --git a/components/modules/files/make_params.qmd b/components/modules/files/make_params.qmd
index 5af2b521..7cc6ebc1 100644
--- a/components/modules/files/make_params.qmd
+++ b/components/modules/files/make_params.qmd
@@ -14,7 +14,7 @@ ID: `make_params`
 Namespace: `files`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/files/make_params/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/files/make_params/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/files/make_params/main.nf \
   --help
 ```
@@ -58,7 +58,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/files/make_params/main.nf \
   -params-file params.yaml
diff --git a/components/modules/filter/delimit_fraction.qmd b/components/modules/filter/delimit_fraction.qmd
index 1dd05ed7..1f0b6438 100644
--- a/components/modules/filter/delimit_fraction.qmd
+++ b/components/modules/filter/delimit_fraction.qmd
@@ -14,7 +14,7 @@ ID: `delimit_fraction`
 Namespace: `filter`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/filter/delimit_fraction/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/filter/delimit_fraction/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/filter/delimit_fraction/main.nf \
   --help
 ```
@@ -63,7 +63,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/filter/delimit_fraction/main.nf \
   -params-file params.yaml
diff --git a/components/modules/filter/do_filter.qmd b/components/modules/filter/do_filter.qmd
index 5bbef5a4..79a319e8 100644
--- a/components/modules/filter/do_filter.qmd
+++ b/components/modules/filter/do_filter.qmd
@@ -14,7 +14,7 @@ ID: `do_filter`
 Namespace: `filter`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/filter/do_filter/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/filter/do_filter/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/filter/do_filter/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/filter/do_filter/main.nf \
   -params-file params.yaml
diff --git a/components/modules/filter/filter_with_counts.qmd b/components/modules/filter/filter_with_counts.qmd
index e718db0d..a82b461c 100644
--- a/components/modules/filter/filter_with_counts.qmd
+++ b/components/modules/filter/filter_with_counts.qmd
@@ -14,7 +14,7 @@ ID: `filter_with_counts`
 Namespace: `filter`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/filter/filter_with_counts/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/filter/filter_with_counts/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -32,7 +32,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/filter/filter_with_counts/main.nf \
   --help
 ```
@@ -69,7 +69,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/filter/filter_with_counts/main.nf \
   -params-file params.yaml
diff --git a/components/modules/filter/filter_with_scrublet.qmd b/components/modules/filter/filter_with_scrublet.qmd
index 84c2fdaf..918b061e 100644
--- a/components/modules/filter/filter_with_scrublet.qmd
+++ b/components/modules/filter/filter_with_scrublet.qmd
@@ -14,7 +14,7 @@ ID: `filter_with_scrublet`
 Namespace: `filter`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/filter/filter_with_scrublet/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/filter/filter_with_scrublet/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -49,7 +49,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/filter/filter_with_scrublet/main.nf \
   --help
 ```
@@ -87,7 +87,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/filter/filter_with_scrublet/main.nf \
   -params-file params.yaml
diff --git a/components/modules/filter/intersect_obs.qmd b/components/modules/filter/intersect_obs.qmd
index 719fe79e..0f244aea 100644
--- a/components/modules/filter/intersect_obs.qmd
+++ b/components/modules/filter/intersect_obs.qmd
@@ -14,7 +14,7 @@ ID: `intersect_obs`
 Namespace: `filter`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/filter/intersect_obs/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/filter/intersect_obs/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -31,7 +31,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/filter/intersect_obs/main.nf \
   --help
 ```
@@ -55,7 +55,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/filter/intersect_obs/main.nf \
   -params-file params.yaml
diff --git a/components/modules/filter/remove_modality.qmd b/components/modules/filter/remove_modality.qmd
index 0ab78cb9..b98b8ab2 100644
--- a/components/modules/filter/remove_modality.qmd
+++ b/components/modules/filter/remove_modality.qmd
@@ -14,7 +14,7 @@ ID: `remove_modality`
 Namespace: `filter`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/filter/remove_modality/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/filter/remove_modality/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/filter/remove_modality/main.nf \
   --help
 ```
@@ -54,7 +54,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/filter/remove_modality/main.nf \
   -params-file params.yaml
diff --git a/components/modules/filter/subset_h5mu.qmd b/components/modules/filter/subset_h5mu.qmd
index 3e47e450..6bb3d26b 100644
--- a/components/modules/filter/subset_h5mu.qmd
+++ b/components/modules/filter/subset_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `subset_h5mu`
 Namespace: `filter`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/filter/subset_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/filter/subset_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/filter/subset_h5mu/main.nf \
   --help
 ```
@@ -55,7 +55,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/filter/subset_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/filter/subset_obsp.qmd b/components/modules/filter/subset_obsp.qmd
index 2f1cbb6a..cf85e954 100644
--- a/components/modules/filter/subset_obsp.qmd
+++ b/components/modules/filter/subset_obsp.qmd
@@ -14,7 +14,7 @@ ID: `subset_obsp`
 Namespace: `filter`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/filter/subset_obsp/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/filter/subset_obsp/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/filter/subset_obsp/main.nf \
   --help
 ```
@@ -62,7 +62,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/filter/subset_obsp/main.nf \
   -params-file params.yaml
diff --git a/components/modules/genetic_demux/bcftools.qmd b/components/modules/genetic_demux/bcftools.qmd
index a8b6be67..fa4a430e 100644
--- a/components/modules/genetic_demux/bcftools.qmd
+++ b/components/modules/genetic_demux/bcftools.qmd
@@ -14,7 +14,7 @@ ID: `bcftools`
 Namespace: `genetic_demux`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/genetic_demux/bcftools/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/genetic_demux/bcftools/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/genetic_demux/bcftools/main.nf \
   --help
 ```
@@ -55,7 +55,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/genetic_demux/bcftools/main.nf \
   -params-file params.yaml
diff --git a/components/modules/genetic_demux/cellsnp.qmd b/components/modules/genetic_demux/cellsnp.qmd
index c9e38104..1bddf6b5 100644
--- a/components/modules/genetic_demux/cellsnp.qmd
+++ b/components/modules/genetic_demux/cellsnp.qmd
@@ -14,7 +14,7 @@ ID: `cellsnp`
 Namespace: `genetic_demux`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/genetic_demux/cellsnp/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/genetic_demux/cellsnp/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/genetic_demux/cellsnp/main.nf \
   --help
 ```
@@ -77,7 +77,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/genetic_demux/cellsnp/main.nf \
   -params-file params.yaml
diff --git a/components/modules/genetic_demux/demuxlet.qmd b/components/modules/genetic_demux/demuxlet.qmd
index 28ddfbcc..b8c98704 100644
--- a/components/modules/genetic_demux/demuxlet.qmd
+++ b/components/modules/genetic_demux/demuxlet.qmd
@@ -14,7 +14,7 @@ ID: `demuxlet`
 Namespace: `genetic_demux`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/genetic_demux/demuxlet/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/genetic_demux/demuxlet/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -32,7 +32,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/genetic_demux/demuxlet/main.nf \
   --help
 ```
@@ -84,7 +84,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/genetic_demux/demuxlet/main.nf \
   -params-file params.yaml
diff --git a/components/modules/genetic_demux/dsc_pileup.qmd b/components/modules/genetic_demux/dsc_pileup.qmd
index 4f85eea7..a95a40a4 100644
--- a/components/modules/genetic_demux/dsc_pileup.qmd
+++ b/components/modules/genetic_demux/dsc_pileup.qmd
@@ -14,7 +14,7 @@ ID: `dsc_pileup`
 Namespace: `genetic_demux`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/genetic_demux/dsc_pileup/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/genetic_demux/dsc_pileup/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -32,7 +32,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/genetic_demux/dsc_pileup/main.nf \
   --help
 ```
@@ -77,7 +77,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/genetic_demux/dsc_pileup/main.nf \
   -params-file params.yaml
diff --git a/components/modules/genetic_demux/freebayes.qmd b/components/modules/genetic_demux/freebayes.qmd
index 62d4c661..06340aa6 100644
--- a/components/modules/genetic_demux/freebayes.qmd
+++ b/components/modules/genetic_demux/freebayes.qmd
@@ -14,7 +14,7 @@ ID: `freebayes`
 Namespace: `genetic_demux`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/genetic_demux/freebayes/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/genetic_demux/freebayes/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/genetic_demux/freebayes/main.nf \
   --help
 ```
@@ -129,7 +129,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/genetic_demux/freebayes/main.nf \
   -params-file params.yaml
diff --git a/components/modules/genetic_demux/freemuxlet.qmd b/components/modules/genetic_demux/freemuxlet.qmd
index 0c28ddfe..10c2c433 100644
--- a/components/modules/genetic_demux/freemuxlet.qmd
+++ b/components/modules/genetic_demux/freemuxlet.qmd
@@ -14,7 +14,7 @@ ID: `freemuxlet`
 Namespace: `genetic_demux`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/genetic_demux/freemuxlet/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/genetic_demux/freemuxlet/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -31,7 +31,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/genetic_demux/freemuxlet/main.nf \
   --help
 ```
@@ -76,7 +76,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/genetic_demux/freemuxlet/main.nf \
   -params-file params.yaml
diff --git a/components/modules/genetic_demux/samtools.qmd b/components/modules/genetic_demux/samtools.qmd
index 7b554dbe..b24b3e75 100644
--- a/components/modules/genetic_demux/samtools.qmd
+++ b/components/modules/genetic_demux/samtools.qmd
@@ -14,7 +14,7 @@ ID: `samtools`
 Namespace: `genetic_demux`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/genetic_demux/samtools/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/genetic_demux/samtools/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/genetic_demux/samtools/main.nf \
   --help
 ```
@@ -52,7 +52,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/genetic_demux/samtools/main.nf \
   -params-file params.yaml
diff --git a/components/modules/genetic_demux/scsplit.qmd b/components/modules/genetic_demux/scsplit.qmd
index 72217d1e..828f240c 100644
--- a/components/modules/genetic_demux/scsplit.qmd
+++ b/components/modules/genetic_demux/scsplit.qmd
@@ -14,7 +14,7 @@ ID: `scsplit`
 Namespace: `genetic_demux`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/genetic_demux/scsplit/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/genetic_demux/scsplit/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/genetic_demux/scsplit/main.nf \
   --help
 ```
@@ -69,7 +69,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/genetic_demux/scsplit/main.nf \
   -params-file params.yaml
diff --git a/components/modules/genetic_demux/souporcell.qmd b/components/modules/genetic_demux/souporcell.qmd
index 67a9bc2b..9d662d97 100644
--- a/components/modules/genetic_demux/souporcell.qmd
+++ b/components/modules/genetic_demux/souporcell.qmd
@@ -14,7 +14,7 @@ ID: `souporcell`
 Namespace: `genetic_demux`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/genetic_demux/souporcell/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/genetic_demux/souporcell/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/genetic_demux/souporcell/main.nf \
   --help
 ```
@@ -70,7 +70,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/genetic_demux/souporcell/main.nf \
   -params-file params.yaml
diff --git a/components/modules/genetic_demux/vireo.qmd b/components/modules/genetic_demux/vireo.qmd
index 78d1be1c..8425212f 100644
--- a/components/modules/genetic_demux/vireo.qmd
+++ b/components/modules/genetic_demux/vireo.qmd
@@ -14,7 +14,7 @@ ID: `vireo`
 Namespace: `genetic_demux`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/genetic_demux/vireo/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/genetic_demux/vireo/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/genetic_demux/vireo/main.nf \
   --help
 ```
@@ -70,7 +70,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/genetic_demux/vireo/main.nf \
   -params-file params.yaml
diff --git a/components/modules/integrate/harmonypy.qmd b/components/modules/integrate/harmonypy.qmd
index ed3dc24b..67880010 100644
--- a/components/modules/integrate/harmonypy.qmd
+++ b/components/modules/integrate/harmonypy.qmd
@@ -14,7 +14,7 @@ ID: `harmonypy`
 Namespace: `integrate`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/integrate/harmonypy/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/integrate/harmonypy/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/integrate/harmonypy/main.nf \
   --help
 ```
@@ -58,7 +58,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/integrate/harmonypy/main.nf \
   -params-file params.yaml
diff --git a/components/modules/integrate/scanorama.qmd b/components/modules/integrate/scanorama.qmd
index f5b2e77c..7efd68c2 100644
--- a/components/modules/integrate/scanorama.qmd
+++ b/components/modules/integrate/scanorama.qmd
@@ -14,7 +14,7 @@ ID: `scanorama`
 Namespace: `integrate`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/integrate/scanorama/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/integrate/scanorama/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/integrate/scanorama/main.nf \
   --help
 ```
@@ -62,7 +62,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/integrate/scanorama/main.nf \
   -params-file params.yaml
diff --git a/components/modules/integrate/scarches.qmd b/components/modules/integrate/scarches.qmd
index 423cb66f..0e3e0c86 100644
--- a/components/modules/integrate/scarches.qmd
+++ b/components/modules/integrate/scarches.qmd
@@ -14,7 +14,7 @@ ID: `scarches`
 Namespace: `integrate`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/integrate/scarches/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/integrate/scarches/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/integrate/scarches/main.nf \
   --help
 ```
@@ -82,7 +82,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/integrate/scarches/main.nf \
   -params-file params.yaml
diff --git a/components/modules/integrate/scvi.qmd b/components/modules/integrate/scvi.qmd
index 77f7fef2..80ebfea5 100644
--- a/components/modules/integrate/scvi.qmd
+++ b/components/modules/integrate/scvi.qmd
@@ -14,7 +14,7 @@ ID: `scvi`
 Namespace: `integrate`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/integrate/scvi/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/integrate/scvi/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/integrate/scvi/main.nf \
   --help
 ```
@@ -99,7 +99,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/integrate/scvi/main.nf \
   -params-file params.yaml
diff --git a/components/modules/integrate/totalvi.qmd b/components/modules/integrate/totalvi.qmd
index b0c20726..c4b60585 100644
--- a/components/modules/integrate/totalvi.qmd
+++ b/components/modules/integrate/totalvi.qmd
@@ -14,7 +14,7 @@ ID: `totalvi`
 Namespace: `integrate`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/integrate/totalvi/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/integrate/totalvi/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/integrate/totalvi/main.nf \
   --help
 ```
@@ -75,7 +75,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/integrate/totalvi/main.nf \
   -params-file params.yaml
diff --git a/components/modules/interpret/lianapy.qmd b/components/modules/interpret/lianapy.qmd
index 8e59c39d..033d8813 100644
--- a/components/modules/interpret/lianapy.qmd
+++ b/components/modules/interpret/lianapy.qmd
@@ -14,7 +14,7 @@ ID: `lianapy`
 Namespace: `interpret`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/interpret/lianapy/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/interpret/lianapy/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/interpret/lianapy/main.nf \
   --help
 ```
@@ -63,7 +63,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/interpret/lianapy/main.nf \
   -params-file params.yaml
diff --git a/components/modules/labels_transfer/knn.qmd b/components/modules/labels_transfer/knn.qmd
index aa16f0e5..c0374ace 100644
--- a/components/modules/labels_transfer/knn.qmd
+++ b/components/modules/labels_transfer/knn.qmd
@@ -14,7 +14,7 @@ ID: `knn`
 Namespace: `labels_transfer`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/labels_transfer/knn/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/labels_transfer/knn/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/labels_transfer/knn/main.nf \
   --help
 ```
@@ -76,7 +76,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/labels_transfer/knn/main.nf \
   -params-file params.yaml
diff --git a/components/modules/labels_transfer/xgboost.qmd b/components/modules/labels_transfer/xgboost.qmd
index aa4204fb..9f41b6b8 100644
--- a/components/modules/labels_transfer/xgboost.qmd
+++ b/components/modules/labels_transfer/xgboost.qmd
@@ -14,7 +14,7 @@ ID: `xgboost`
 Namespace: `labels_transfer`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/labels_transfer/xgboost/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/labels_transfer/xgboost/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/labels_transfer/xgboost/main.nf \
   --help
 ```
@@ -88,7 +88,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/labels_transfer/xgboost/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/bd_rhapsody.qmd b/components/modules/mapping/bd_rhapsody.qmd
index 09f9823f..fab3b8c6 100644
--- a/components/modules/mapping/bd_rhapsody.qmd
+++ b/components/modules/mapping/bd_rhapsody.qmd
@@ -14,7 +14,7 @@ ID: `bd_rhapsody`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/mapping/bd_rhapsody/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/mapping/bd_rhapsody/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -36,7 +36,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/mapping/bd_rhapsody/main.nf \
   --help
 ```
@@ -153,7 +153,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/bd_rhapsody/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/cellranger_atac_count.qmd b/components/modules/mapping/cellranger_atac_count.qmd
index 6a72740d..65c0b292 100644
--- a/components/modules/mapping/cellranger_atac_count.qmd
+++ b/components/modules/mapping/cellranger_atac_count.qmd
@@ -14,7 +14,7 @@ ID: `cellranger_atac_count`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/mapping/cellranger_atac_count/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/mapping/cellranger_atac_count/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/mapping/cellranger_atac_count/main.nf \
   --help
 ```
@@ -63,7 +63,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/cellranger_atac_count/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/cellranger_count.qmd b/components/modules/mapping/cellranger_count.qmd
index 3ac36ff5..1bd0f8cf 100644
--- a/components/modules/mapping/cellranger_count.qmd
+++ b/components/modules/mapping/cellranger_count.qmd
@@ -14,7 +14,7 @@ ID: `cellranger_count`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/mapping/cellranger_count/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/mapping/cellranger_count/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/mapping/cellranger_count/main.nf \
   --help
 ```
@@ -68,7 +68,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/cellranger_count/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/cellranger_count_split.qmd b/components/modules/mapping/cellranger_count_split.qmd
index 5c8d4e25..befcd7ce 100644
--- a/components/modules/mapping/cellranger_count_split.qmd
+++ b/components/modules/mapping/cellranger_count_split.qmd
@@ -14,7 +14,7 @@ ID: `cellranger_count_split`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/mapping/cellranger_count_split/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/mapping/cellranger_count_split/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/mapping/cellranger_count_split/main.nf \
   --help
 ```
@@ -57,7 +57,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/cellranger_count_split/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/cellranger_multi.qmd b/components/modules/mapping/cellranger_multi.qmd
index f25a40bc..7d5bc1be 100644
--- a/components/modules/mapping/cellranger_multi.qmd
+++ b/components/modules/mapping/cellranger_multi.qmd
@@ -14,7 +14,7 @@ ID: `cellranger_multi`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/mapping/cellranger_multi/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/mapping/cellranger_multi/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/mapping/cellranger_multi/main.nf \
   --help
 ```
@@ -124,7 +124,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/cellranger_multi/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/htseq_count.qmd b/components/modules/mapping/htseq_count.qmd
index f090db68..4eaecbb9 100644
--- a/components/modules/mapping/htseq_count.qmd
+++ b/components/modules/mapping/htseq_count.qmd
@@ -14,7 +14,7 @@ ID: `htseq_count`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/mapping/htseq_count/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/mapping/htseq_count/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -33,7 +33,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/mapping/htseq_count/main.nf \
   --help
 ```
@@ -75,7 +75,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/htseq_count/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/htseq_count_to_h5mu.qmd b/components/modules/mapping/htseq_count_to_h5mu.qmd
index 929dc8da..19332310 100644
--- a/components/modules/mapping/htseq_count_to_h5mu.qmd
+++ b/components/modules/mapping/htseq_count_to_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `htseq_count_to_h5mu`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/mapping/htseq_count_to_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/mapping/htseq_count_to_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/mapping/htseq_count_to_h5mu/main.nf \
   --help
 ```
@@ -59,7 +59,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/htseq_count_to_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/multi_star.qmd b/components/modules/mapping/multi_star.qmd
index 35e87348..87ebda44 100644
--- a/components/modules/mapping/multi_star.qmd
+++ b/components/modules/mapping/multi_star.qmd
@@ -14,7 +14,7 @@ ID: `multi_star`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/mapping/multi_star/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/mapping/multi_star/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/mapping/multi_star/main.nf \
   --help
 ```
@@ -296,7 +296,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/multi_star/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/multi_star_to_h5mu.qmd b/components/modules/mapping/multi_star_to_h5mu.qmd
index 0467220e..679d0e57 100644
--- a/components/modules/mapping/multi_star_to_h5mu.qmd
+++ b/components/modules/mapping/multi_star_to_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `multi_star_to_h5mu`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/mapping/multi_star_to_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/mapping/multi_star_to_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/mapping/multi_star_to_h5mu/main.nf \
   --help
 ```
@@ -53,7 +53,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/multi_star_to_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/samtools_sort.qmd b/components/modules/mapping/samtools_sort.qmd
index 0abea89c..2acd2af0 100644
--- a/components/modules/mapping/samtools_sort.qmd
+++ b/components/modules/mapping/samtools_sort.qmd
@@ -14,7 +14,7 @@ ID: `samtools_sort`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/mapping/samtools_sort/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/mapping/samtools_sort/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -36,7 +36,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/mapping/samtools_sort/main.nf \
   --help
 ```
@@ -70,7 +70,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/samtools_sort/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/star_align.qmd b/components/modules/mapping/star_align.qmd
index 0e6f75f6..bb0994ad 100644
--- a/components/modules/mapping/star_align.qmd
+++ b/components/modules/mapping/star_align.qmd
@@ -14,7 +14,7 @@ ID: `star_align`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/mapping/star_align/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/mapping/star_align/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/mapping/star_align/main.nf \
   --help
 ```
@@ -280,7 +280,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/star_align/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/star_align_v273a.qmd b/components/modules/mapping/star_align_v273a.qmd
index bdcb1362..260ffa7c 100644
--- a/components/modules/mapping/star_align_v273a.qmd
+++ b/components/modules/mapping/star_align_v273a.qmd
@@ -14,7 +14,7 @@ ID: `star_align_v273a`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/mapping/star_align_v273a/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/mapping/star_align_v273a/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/mapping/star_align_v273a/main.nf \
   --help
 ```
@@ -280,7 +280,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/star_align_v273a/main.nf \
   -params-file params.yaml
diff --git a/components/modules/metadata/add_id.qmd b/components/modules/metadata/add_id.qmd
index f74ecd65..9f4a1aa4 100644
--- a/components/modules/metadata/add_id.qmd
+++ b/components/modules/metadata/add_id.qmd
@@ -14,7 +14,7 @@ ID: `add_id`
 Namespace: `metadata`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/metadata/add_id/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/metadata/add_id/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -31,7 +31,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/metadata/add_id/main.nf \
   --help
 ```
@@ -57,7 +57,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/metadata/add_id/main.nf \
   -params-file params.yaml
diff --git a/components/modules/metadata/grep_annotation_column.qmd b/components/modules/metadata/grep_annotation_column.qmd
index 18364518..46f5549e 100644
--- a/components/modules/metadata/grep_annotation_column.qmd
+++ b/components/modules/metadata/grep_annotation_column.qmd
@@ -14,7 +14,7 @@ ID: `grep_annotation_column`
 Namespace: `metadata`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/metadata/grep_annotation_column/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/metadata/grep_annotation_column/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/metadata/grep_annotation_column/main.nf \
   --help
 ```
@@ -66,7 +66,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/metadata/grep_annotation_column/main.nf \
   -params-file params.yaml
diff --git a/components/modules/metadata/join_csv.qmd b/components/modules/metadata/join_csv.qmd
index 19ef9c3d..d99c6938 100644
--- a/components/modules/metadata/join_csv.qmd
+++ b/components/modules/metadata/join_csv.qmd
@@ -14,7 +14,7 @@ ID: `join_csv`
 Namespace: `metadata`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/metadata/join_csv/config.vsh.yml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/metadata/join_csv/config.vsh.yml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/metadata/join_csv/main.nf \
   --help
 ```
@@ -64,7 +64,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/metadata/join_csv/main.nf \
   -params-file params.yaml
diff --git a/components/modules/metadata/join_uns_to_obs.qmd b/components/modules/metadata/join_uns_to_obs.qmd
index 41528f2c..59e5bef0 100644
--- a/components/modules/metadata/join_uns_to_obs.qmd
+++ b/components/modules/metadata/join_uns_to_obs.qmd
@@ -14,7 +14,7 @@ ID: `join_uns_to_obs`
 Namespace: `metadata`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/metadata/join_uns_to_obs/config.vsh.yml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/metadata/join_uns_to_obs/config.vsh.yml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/metadata/join_uns_to_obs/main.nf \
   --help
 ```
@@ -55,7 +55,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/metadata/join_uns_to_obs/main.nf \
   -params-file params.yaml
diff --git a/components/modules/metadata/move_obsm_to_obs.qmd b/components/modules/metadata/move_obsm_to_obs.qmd
index bf19acad..1db5f316 100644
--- a/components/modules/metadata/move_obsm_to_obs.qmd
+++ b/components/modules/metadata/move_obsm_to_obs.qmd
@@ -14,7 +14,7 @@ ID: `move_obsm_to_obs`
 Namespace: `metadata`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/metadata/move_obsm_to_obs/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/metadata/move_obsm_to_obs/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -32,7 +32,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/metadata/move_obsm_to_obs/main.nf \
   --help
 ```
@@ -61,7 +61,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/metadata/move_obsm_to_obs/main.nf \
   -params-file params.yaml
diff --git a/components/modules/neighbors/bbknn.qmd b/components/modules/neighbors/bbknn.qmd
index fb724c5b..1a4ab2ca 100644
--- a/components/modules/neighbors/bbknn.qmd
+++ b/components/modules/neighbors/bbknn.qmd
@@ -14,7 +14,7 @@ ID: `bbknn`
 Namespace: `neighbors`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/neighbors/bbknn/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/neighbors/bbknn/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/neighbors/bbknn/main.nf \
   --help
 ```
@@ -62,7 +62,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/neighbors/bbknn/main.nf \
   -params-file params.yaml
diff --git a/components/modules/neighbors/find_neighbors.qmd b/components/modules/neighbors/find_neighbors.qmd
index 73c9f2a4..2be603b2 100644
--- a/components/modules/neighbors/find_neighbors.qmd
+++ b/components/modules/neighbors/find_neighbors.qmd
@@ -14,7 +14,7 @@ ID: `find_neighbors`
 Namespace: `neighbors`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/neighbors/find_neighbors/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/neighbors/find_neighbors/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -31,7 +31,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/neighbors/find_neighbors/main.nf \
   --help
 ```
@@ -62,7 +62,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/neighbors/find_neighbors/main.nf \
   -params-file params.yaml
diff --git a/components/modules/process_10xh5/filter_10xh5.qmd b/components/modules/process_10xh5/filter_10xh5.qmd
index 9050c84e..67958bf4 100644
--- a/components/modules/process_10xh5/filter_10xh5.qmd
+++ b/components/modules/process_10xh5/filter_10xh5.qmd
@@ -14,7 +14,7 @@ ID: `filter_10xh5`
 Namespace: `process_10xh5`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/process_10xh5/filter_10xh5/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/process_10xh5/filter_10xh5/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/process_10xh5/filter_10xh5/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/process_10xh5/filter_10xh5/main.nf \
   -params-file params.yaml
diff --git a/components/modules/qc/calculate_atac_qc_metrics.qmd b/components/modules/qc/calculate_atac_qc_metrics.qmd
index a7a819fc..1ea9438c 100644
--- a/components/modules/qc/calculate_atac_qc_metrics.qmd
+++ b/components/modules/qc/calculate_atac_qc_metrics.qmd
@@ -14,7 +14,7 @@ ID: `calculate_atac_qc_metrics`
 Namespace: `qc`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/qc/calculate_atac_qc_metrics/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/qc/calculate_atac_qc_metrics/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -37,7 +37,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/qc/calculate_atac_qc_metrics/main.nf \
   --help
 ```
@@ -71,7 +71,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/qc/calculate_atac_qc_metrics/main.nf \
   -params-file params.yaml
diff --git a/components/modules/qc/calculate_qc_metrics.qmd b/components/modules/qc/calculate_qc_metrics.qmd
index f4553eec..b59adc1c 100644
--- a/components/modules/qc/calculate_qc_metrics.qmd
+++ b/components/modules/qc/calculate_qc_metrics.qmd
@@ -14,7 +14,7 @@ ID: `calculate_qc_metrics`
 Namespace: `qc`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/qc/calculate_qc_metrics/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/qc/calculate_qc_metrics/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -46,7 +46,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/qc/calculate_qc_metrics/main.nf \
   --help
 ```
@@ -88,7 +88,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/qc/calculate_qc_metrics/main.nf \
   -params-file params.yaml
diff --git a/components/modules/qc/fastqc.qmd b/components/modules/qc/fastqc.qmd
index 87cf1131..be71be1f 100644
--- a/components/modules/qc/fastqc.qmd
+++ b/components/modules/qc/fastqc.qmd
@@ -14,7 +14,7 @@ ID: `fastqc`
 Namespace: `qc`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/qc/fastqc/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/qc/fastqc/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/qc/fastqc/main.nf \
   --help
 ```
@@ -54,7 +54,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/qc/fastqc/main.nf \
   -params-file params.yaml
diff --git a/components/modules/qc/multiqc.qmd b/components/modules/qc/multiqc.qmd
index ed717df4..660c034a 100644
--- a/components/modules/qc/multiqc.qmd
+++ b/components/modules/qc/multiqc.qmd
@@ -14,7 +14,7 @@ ID: `multiqc`
 Namespace: `qc`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/qc/multiqc/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/qc/multiqc/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/qc/multiqc/main.nf \
   --help
 ```
@@ -52,7 +52,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/qc/multiqc/main.nf \
   -params-file params.yaml
diff --git a/components/modules/query/cellxgene_census.qmd b/components/modules/query/cellxgene_census.qmd
index d5fe576f..36e3bde7 100644
--- a/components/modules/query/cellxgene_census.qmd
+++ b/components/modules/query/cellxgene_census.qmd
@@ -14,7 +14,7 @@ ID: `cellxgene_census`
 Namespace: `query`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/query/cellxgene_census/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/query/cellxgene_census/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -32,7 +32,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/query/cellxgene_census/main.nf \
   --help
 ```
@@ -77,7 +77,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/query/cellxgene_census/main.nf \
   -params-file params.yaml
diff --git a/components/modules/reference/build_bdrhap_reference.qmd b/components/modules/reference/build_bdrhap_reference.qmd
index 092f0c09..1731acb6 100644
--- a/components/modules/reference/build_bdrhap_reference.qmd
+++ b/components/modules/reference/build_bdrhap_reference.qmd
@@ -14,7 +14,7 @@ ID: `build_bdrhap_reference`
 Namespace: `reference`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/reference/build_bdrhap_reference/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/reference/build_bdrhap_reference/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -36,7 +36,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/reference/build_bdrhap_reference/main.nf \
   --help
 ```
@@ -68,7 +68,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/reference/build_bdrhap_reference/main.nf \
   -params-file params.yaml
diff --git a/components/modules/reference/build_cellranger_arc_reference.qmd b/components/modules/reference/build_cellranger_arc_reference.qmd
index 60434d65..8932bf2b 100644
--- a/components/modules/reference/build_cellranger_arc_reference.qmd
+++ b/components/modules/reference/build_cellranger_arc_reference.qmd
@@ -14,7 +14,7 @@ ID: `build_cellranger_arc_reference`
 Namespace: `reference`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/reference/build_cellranger_arc_reference/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/reference/build_cellranger_arc_reference/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/reference/build_cellranger_arc_reference/main.nf \
   --help
 ```
@@ -58,7 +58,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/reference/build_cellranger_arc_reference/main.nf \
   -params-file params.yaml
diff --git a/components/modules/reference/build_cellranger_reference.qmd b/components/modules/reference/build_cellranger_reference.qmd
index 10ec279a..9cdf375a 100644
--- a/components/modules/reference/build_cellranger_reference.qmd
+++ b/components/modules/reference/build_cellranger_reference.qmd
@@ -14,7 +14,7 @@ ID: `build_cellranger_reference`
 Namespace: `reference`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/reference/build_cellranger_reference/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/reference/build_cellranger_reference/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/reference/build_cellranger_reference/main.nf \
   --help
 ```
@@ -54,7 +54,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/reference/build_cellranger_reference/main.nf \
   -params-file params.yaml
diff --git a/components/modules/reference/build_star_reference.qmd b/components/modules/reference/build_star_reference.qmd
index 751f3699..93234208 100644
--- a/components/modules/reference/build_star_reference.qmd
+++ b/components/modules/reference/build_star_reference.qmd
@@ -14,7 +14,7 @@ ID: `build_star_reference`
 Namespace: `reference`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/reference/build_star_reference/config.vsh.yml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/reference/build_star_reference/config.vsh.yml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/reference/build_star_reference/main.nf \
   --help
 ```
@@ -58,7 +58,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/reference/build_star_reference/main.nf \
   -params-file params.yaml
diff --git a/components/modules/reference/cellranger_mkgtf.qmd b/components/modules/reference/cellranger_mkgtf.qmd
index b63549f8..c4923cf2 100644
--- a/components/modules/reference/cellranger_mkgtf.qmd
+++ b/components/modules/reference/cellranger_mkgtf.qmd
@@ -14,7 +14,7 @@ ID: `cellranger_mkgtf`
 Namespace: `reference`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/reference/cellranger_mkgtf/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/reference/cellranger_mkgtf/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/reference/cellranger_mkgtf/main.nf \
   --help
 ```
@@ -53,7 +53,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/reference/cellranger_mkgtf/main.nf \
   -params-file params.yaml
diff --git a/components/modules/reference/make_reference.qmd b/components/modules/reference/make_reference.qmd
index 43189f2e..589ad15f 100644
--- a/components/modules/reference/make_reference.qmd
+++ b/components/modules/reference/make_reference.qmd
@@ -14,7 +14,7 @@ ID: `make_reference`
 Namespace: `reference`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/reference/make_reference/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/reference/make_reference/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -34,7 +34,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/reference/make_reference/main.nf \
   --help
 ```
@@ -60,7 +60,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/reference/make_reference/main.nf \
   -params-file params.yaml
diff --git a/components/modules/report/mermaid.qmd b/components/modules/report/mermaid.qmd
index cfd1abf6..65f4da67 100644
--- a/components/modules/report/mermaid.qmd
+++ b/components/modules/report/mermaid.qmd
@@ -14,7 +14,7 @@ ID: `mermaid`
 Namespace: `report`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/report/mermaid/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/report/mermaid/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/report/mermaid/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/report/mermaid/main.nf \
   -params-file params.yaml
diff --git a/components/modules/scgpt/binning.qmd b/components/modules/scgpt/binning.qmd
index 4fc92df3..57f391a6 100644
--- a/components/modules/scgpt/binning.qmd
+++ b/components/modules/scgpt/binning.qmd
@@ -14,7 +14,7 @@ ID: `binning`
 Namespace: `scgpt`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/scgpt/binning/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/scgpt/binning/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/scgpt/binning/main.nf \
   --help
 ```
@@ -63,7 +63,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/scgpt/binning/main.nf \
   -params-file params.yaml
diff --git a/components/modules/scgpt/cell_type_annotation.qmd b/components/modules/scgpt/cell_type_annotation.qmd
index 35b4e641..1ec5fed5 100644
--- a/components/modules/scgpt/cell_type_annotation.qmd
+++ b/components/modules/scgpt/cell_type_annotation.qmd
@@ -14,7 +14,7 @@ ID: `cell_type_annotation`
 Namespace: `scgpt`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/scgpt/cell_type_annotation/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/scgpt/cell_type_annotation/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/scgpt/cell_type_annotation/main.nf \
   --help
 ```
@@ -76,7 +76,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/scgpt/cell_type_annotation/main.nf \
   -params-file params.yaml
diff --git a/components/modules/scgpt/cross_check_genes.qmd b/components/modules/scgpt/cross_check_genes.qmd
index 775c612c..f30886f5 100644
--- a/components/modules/scgpt/cross_check_genes.qmd
+++ b/components/modules/scgpt/cross_check_genes.qmd
@@ -14,7 +14,7 @@ ID: `cross_check_genes`
 Namespace: `scgpt`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/scgpt/cross_check_genes/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/scgpt/cross_check_genes/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/scgpt/cross_check_genes/main.nf \
   --help
 ```
@@ -63,7 +63,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/scgpt/cross_check_genes/main.nf \
   -params-file params.yaml
diff --git a/components/modules/scgpt/embedding.qmd b/components/modules/scgpt/embedding.qmd
index 4efa9168..32be62ab 100644
--- a/components/modules/scgpt/embedding.qmd
+++ b/components/modules/scgpt/embedding.qmd
@@ -14,7 +14,7 @@ ID: `embedding`
 Namespace: `scgpt`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/scgpt/embedding/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/scgpt/embedding/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/scgpt/embedding/main.nf \
   --help
 ```
@@ -72,7 +72,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/scgpt/embedding/main.nf \
   -params-file params.yaml
diff --git a/components/modules/scgpt/pad_tokenize.qmd b/components/modules/scgpt/pad_tokenize.qmd
index 2753dbb3..3c44cf14 100644
--- a/components/modules/scgpt/pad_tokenize.qmd
+++ b/components/modules/scgpt/pad_tokenize.qmd
@@ -14,7 +14,7 @@ ID: `pad_tokenize`
 Namespace: `scgpt`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/scgpt/pad_tokenize/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/scgpt/pad_tokenize/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/scgpt/pad_tokenize/main.nf \
   --help
 ```
@@ -68,7 +68,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/scgpt/pad_tokenize/main.nf \
   -params-file params.yaml
diff --git a/components/modules/transfer/publish.qmd b/components/modules/transfer/publish.qmd
index b97bdb36..d09c6bb7 100644
--- a/components/modules/transfer/publish.qmd
+++ b/components/modules/transfer/publish.qmd
@@ -14,7 +14,7 @@ ID: `publish`
 Namespace: `transfer`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/transfer/publish/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/transfer/publish/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/transfer/publish/main.nf \
   --help
 ```
@@ -52,7 +52,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/transfer/publish/main.nf \
   -params-file params.yaml
diff --git a/components/modules/transform/bpcells_regress_out.qmd b/components/modules/transform/bpcells_regress_out.qmd
index b46fb751..e3f0b59a 100644
--- a/components/modules/transform/bpcells_regress_out.qmd
+++ b/components/modules/transform/bpcells_regress_out.qmd
@@ -14,7 +14,7 @@ ID: `bpcells_regress_out`
 Namespace: `transform`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/transform/bpcells_regress_out/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/transform/bpcells_regress_out/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/transform/bpcells_regress_out/main.nf \
   --help
 ```
@@ -57,7 +57,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/transform/bpcells_regress_out/main.nf \
   -params-file params.yaml
diff --git a/components/modules/transform/clr.qmd b/components/modules/transform/clr.qmd
index 116e29e4..8aa07a2b 100644
--- a/components/modules/transform/clr.qmd
+++ b/components/modules/transform/clr.qmd
@@ -14,7 +14,7 @@ ID: `clr`
 Namespace: `transform`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/transform/clr/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/transform/clr/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/transform/clr/main.nf \
   --help
 ```
@@ -57,7 +57,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/transform/clr/main.nf \
   -params-file params.yaml
diff --git a/components/modules/transform/delete_layer.qmd b/components/modules/transform/delete_layer.qmd
index 2d9459e4..7fdd9d41 100644
--- a/components/modules/transform/delete_layer.qmd
+++ b/components/modules/transform/delete_layer.qmd
@@ -14,7 +14,7 @@ ID: `delete_layer`
 Namespace: `transform`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/transform/delete_layer/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/transform/delete_layer/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/transform/delete_layer/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/transform/delete_layer/main.nf \
   -params-file params.yaml
diff --git a/components/modules/transform/log1p.qmd b/components/modules/transform/log1p.qmd
index 8b8588a4..74c2b818 100644
--- a/components/modules/transform/log1p.qmd
+++ b/components/modules/transform/log1p.qmd
@@ -14,7 +14,7 @@ ID: `log1p`
 Namespace: `transform`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/transform/log1p/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/transform/log1p/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/transform/log1p/main.nf \
   --help
 ```
@@ -57,7 +57,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/transform/log1p/main.nf \
   -params-file params.yaml
diff --git a/components/modules/transform/move_layer.qmd b/components/modules/transform/move_layer.qmd
index 51d7d1a2..7172a138 100644
--- a/components/modules/transform/move_layer.qmd
+++ b/components/modules/transform/move_layer.qmd
@@ -14,7 +14,7 @@ ID: `move_layer`
 Namespace: `transform`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/transform/move_layer/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/transform/move_layer/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/transform/move_layer/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/transform/move_layer/main.nf \
   -params-file params.yaml
diff --git a/components/modules/transform/normalize_total.qmd b/components/modules/transform/normalize_total.qmd
index e81c9940..fb691bb5 100644
--- a/components/modules/transform/normalize_total.qmd
+++ b/components/modules/transform/normalize_total.qmd
@@ -14,7 +14,7 @@ ID: `normalize_total`
 Namespace: `transform`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/transform/normalize_total/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/transform/normalize_total/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -33,7 +33,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/transform/normalize_total/main.nf \
   --help
 ```
@@ -61,7 +61,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/transform/normalize_total/main.nf \
   -params-file params.yaml
diff --git a/components/modules/transform/regress_out.qmd b/components/modules/transform/regress_out.qmd
index ead8080a..b536fffe 100644
--- a/components/modules/transform/regress_out.qmd
+++ b/components/modules/transform/regress_out.qmd
@@ -14,7 +14,7 @@ ID: `regress_out`
 Namespace: `transform`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/transform/regress_out/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/transform/regress_out/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -31,7 +31,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/transform/regress_out/main.nf \
   --help
 ```
@@ -58,7 +58,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/transform/regress_out/main.nf \
   -params-file params.yaml
diff --git a/components/modules/transform/scale.qmd b/components/modules/transform/scale.qmd
index c045e406..14ec012f 100644
--- a/components/modules/transform/scale.qmd
+++ b/components/modules/transform/scale.qmd
@@ -14,7 +14,7 @@ ID: `scale`
 Namespace: `transform`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/transform/scale/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/transform/scale/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/transform/scale/main.nf \
   --help
 ```
@@ -58,7 +58,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/transform/scale/main.nf \
   -params-file params.yaml
diff --git a/components/modules/transform/tfidf.qmd b/components/modules/transform/tfidf.qmd
index cb75a5fd..a89ffa47 100644
--- a/components/modules/transform/tfidf.qmd
+++ b/components/modules/transform/tfidf.qmd
@@ -14,7 +14,7 @@ ID: `tfidf`
 Namespace: `transform`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/transform/tfidf/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/transform/tfidf/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -34,7 +34,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/transform/tfidf/main.nf \
   --help
 ```
@@ -64,7 +64,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/transform/tfidf/main.nf \
   -params-file params.yaml
diff --git a/components/modules/velocity/scvelo.qmd b/components/modules/velocity/scvelo.qmd
index 80fa3ceb..072a9bbe 100644
--- a/components/modules/velocity/scvelo.qmd
+++ b/components/modules/velocity/scvelo.qmd
@@ -14,7 +14,7 @@ ID: `scvelo`
 Namespace: `velocity`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/velocity/scvelo/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/velocity/scvelo/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/velocity/scvelo/main.nf \
   --help
 ```
@@ -77,7 +77,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/velocity/scvelo/main.nf \
   -params-file params.yaml
diff --git a/components/modules/velocity/velocyto.qmd b/components/modules/velocity/velocyto.qmd
index d9cc46de..9aa31082 100644
--- a/components/modules/velocity/velocyto.qmd
+++ b/components/modules/velocity/velocyto.qmd
@@ -14,7 +14,7 @@ ID: `velocyto`
 Namespace: `velocity`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/velocity/velocyto/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/velocity/velocyto/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/velocity/velocyto/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/velocity/velocyto/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/annotation/harmony_knn.qmd b/components/workflows/annotation/harmony_knn.qmd
index 32234685..6daf3797 100644
--- a/components/workflows/annotation/harmony_knn.qmd
+++ b/components/workflows/annotation/harmony_knn.qmd
@@ -14,7 +14,7 @@ ID: `harmony_knn`
 Namespace: `workflows/annotation`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/annotation/harmony_knn/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/annotation/harmony_knn/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/annotation/harmony_knn/main.nf \
   --help
 ```
@@ -90,7 +90,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/annotation/harmony_knn/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/annotation/scanvi_scarches.qmd b/components/workflows/annotation/scanvi_scarches.qmd
index c21d75ba..24855957 100644
--- a/components/workflows/annotation/scanvi_scarches.qmd
+++ b/components/workflows/annotation/scanvi_scarches.qmd
@@ -14,7 +14,7 @@ ID: `scanvi_scarches`
 Namespace: `workflows/annotation`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/annotation/scanvi_scarches/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/annotation/scanvi_scarches/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/annotation/scanvi_scarches/main.nf \
   --help
 ```
@@ -93,7 +93,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/annotation/scanvi_scarches/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/annotation/scgpt_annotation.qmd b/components/workflows/annotation/scgpt_annotation.qmd
index f9890982..6590f39b 100644
--- a/components/workflows/annotation/scgpt_annotation.qmd
+++ b/components/workflows/annotation/scgpt_annotation.qmd
@@ -14,7 +14,7 @@ ID: `scgpt_annotation`
 Namespace: `workflows/annotation`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/annotation/scgpt_annotation/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/annotation/scgpt_annotation/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -37,7 +37,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/annotation/scgpt_annotation/main.nf \
   --help
 ```
@@ -97,7 +97,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/annotation/scgpt_annotation/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/annotation/scvi_knn.qmd b/components/workflows/annotation/scvi_knn.qmd
index e61894a6..8f8a3926 100644
--- a/components/workflows/annotation/scvi_knn.qmd
+++ b/components/workflows/annotation/scvi_knn.qmd
@@ -14,7 +14,7 @@ ID: `scvi_knn`
 Namespace: `workflows/annotation`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/annotation/scvi_knn/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/annotation/scvi_knn/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -32,7 +32,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/annotation/scvi_knn/main.nf \
   --help
 ```
@@ -97,7 +97,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/annotation/scvi_knn/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/gdo/gdo_singlesample.qmd b/components/workflows/gdo/gdo_singlesample.qmd
index 1a34c9e1..c3608819 100644
--- a/components/workflows/gdo/gdo_singlesample.qmd
+++ b/components/workflows/gdo/gdo_singlesample.qmd
@@ -14,7 +14,7 @@ ID: `gdo_singlesample`
 Namespace: `workflows/gdo`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/gdo/gdo_singlesample/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/gdo/gdo_singlesample/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/gdo/gdo_singlesample/main.nf \
   --help
 ```
@@ -65,7 +65,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/gdo/gdo_singlesample/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/ingestion/bd_rhapsody.qmd b/components/workflows/ingestion/bd_rhapsody.qmd
index b753c7a9..f8642bd4 100644
--- a/components/workflows/ingestion/bd_rhapsody.qmd
+++ b/components/workflows/ingestion/bd_rhapsody.qmd
@@ -14,7 +14,7 @@ ID: `bd_rhapsody`
 Namespace: `workflows/ingestion`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/ingestion/bd_rhapsody/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/ingestion/bd_rhapsody/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -36,7 +36,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/ingestion/bd_rhapsody/main.nf \
   --help
 ```
@@ -110,7 +110,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/ingestion/bd_rhapsody/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/ingestion/cellranger_mapping.qmd b/components/workflows/ingestion/cellranger_mapping.qmd
index 0f6e3a68..d13fb1e3 100644
--- a/components/workflows/ingestion/cellranger_mapping.qmd
+++ b/components/workflows/ingestion/cellranger_mapping.qmd
@@ -14,7 +14,7 @@ ID: `cellranger_mapping`
 Namespace: `workflows/ingestion`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/ingestion/cellranger_mapping/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/ingestion/cellranger_mapping/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/ingestion/cellranger_mapping/main.nf \
   --help
 ```
@@ -68,7 +68,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/ingestion/cellranger_mapping/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/ingestion/cellranger_multi.qmd b/components/workflows/ingestion/cellranger_multi.qmd
index d3bb725b..c415763d 100644
--- a/components/workflows/ingestion/cellranger_multi.qmd
+++ b/components/workflows/ingestion/cellranger_multi.qmd
@@ -14,7 +14,7 @@ ID: `cellranger_multi`
 Namespace: `workflows/ingestion`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/ingestion/cellranger_multi/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/ingestion/cellranger_multi/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/ingestion/cellranger_multi/main.nf \
   --help
 ```
@@ -123,7 +123,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/ingestion/cellranger_multi/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/ingestion/cellranger_postprocessing.qmd b/components/workflows/ingestion/cellranger_postprocessing.qmd
index c4bb38a2..2951e99b 100644
--- a/components/workflows/ingestion/cellranger_postprocessing.qmd
+++ b/components/workflows/ingestion/cellranger_postprocessing.qmd
@@ -14,7 +14,7 @@ ID: `cellranger_postprocessing`
 Namespace: `workflows/ingestion`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/ingestion/cellranger_postprocessing/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/ingestion/cellranger_postprocessing/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/ingestion/cellranger_postprocessing/main.nf \
   --help
 ```
@@ -65,7 +65,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/ingestion/cellranger_postprocessing/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/ingestion/conversion.qmd b/components/workflows/ingestion/conversion.qmd
index ee03c240..1f5beace 100644
--- a/components/workflows/ingestion/conversion.qmd
+++ b/components/workflows/ingestion/conversion.qmd
@@ -14,7 +14,7 @@ ID: `conversion`
 Namespace: `workflows/ingestion`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/ingestion/conversion/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/ingestion/conversion/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/ingestion/conversion/main.nf \
   --help
 ```
@@ -61,7 +61,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/ingestion/conversion/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/ingestion/demux.qmd b/components/workflows/ingestion/demux.qmd
index c293fb4d..6534dae8 100644
--- a/components/workflows/ingestion/demux.qmd
+++ b/components/workflows/ingestion/demux.qmd
@@ -14,7 +14,7 @@ ID: `demux`
 Namespace: `workflows/ingestion`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/ingestion/demux/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/ingestion/demux/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -31,7 +31,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/ingestion/demux/main.nf \
   --help
 ```
@@ -59,7 +59,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/ingestion/demux/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/ingestion/make_reference.qmd b/components/workflows/ingestion/make_reference.qmd
index 57a52ce1..7761fef0 100644
--- a/components/workflows/ingestion/make_reference.qmd
+++ b/components/workflows/ingestion/make_reference.qmd
@@ -14,7 +14,7 @@ ID: `make_reference`
 Namespace: `workflows/ingestion`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/ingestion/make_reference/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/ingestion/make_reference/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/ingestion/make_reference/main.nf \
   --help
 ```
@@ -79,7 +79,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/ingestion/make_reference/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/integration/bbknn_leiden.qmd b/components/workflows/integration/bbknn_leiden.qmd
index 1bfb6184..043ca331 100644
--- a/components/workflows/integration/bbknn_leiden.qmd
+++ b/components/workflows/integration/bbknn_leiden.qmd
@@ -14,7 +14,7 @@ ID: `bbknn_leiden`
 Namespace: `workflows/integration`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/integration/bbknn_leiden/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/integration/bbknn_leiden/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/integration/bbknn_leiden/main.nf \
   --help
 ```
@@ -76,7 +76,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/integration/bbknn_leiden/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/integration/harmony_leiden.qmd b/components/workflows/integration/harmony_leiden.qmd
index 4021245a..fef369a4 100644
--- a/components/workflows/integration/harmony_leiden.qmd
+++ b/components/workflows/integration/harmony_leiden.qmd
@@ -14,7 +14,7 @@ ID: `harmony_leiden`
 Namespace: `workflows/integration`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/integration/harmony_leiden/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/integration/harmony_leiden/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/integration/harmony_leiden/main.nf \
   --help
 ```
@@ -77,7 +77,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/integration/harmony_leiden/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/integration/scanorama_leiden.qmd b/components/workflows/integration/scanorama_leiden.qmd
index 40542caa..630e5b62 100644
--- a/components/workflows/integration/scanorama_leiden.qmd
+++ b/components/workflows/integration/scanorama_leiden.qmd
@@ -14,7 +14,7 @@ ID: `scanorama_leiden`
 Namespace: `workflows/integration`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/integration/scanorama_leiden/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/integration/scanorama_leiden/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/integration/scanorama_leiden/main.nf \
   --help
 ```
@@ -81,7 +81,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/integration/scanorama_leiden/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/integration/scgpt_leiden.qmd b/components/workflows/integration/scgpt_leiden.qmd
index 519270d7..9c4c0d74 100644
--- a/components/workflows/integration/scgpt_leiden.qmd
+++ b/components/workflows/integration/scgpt_leiden.qmd
@@ -14,7 +14,7 @@ ID: `scgpt_leiden`
 Namespace: `workflows/integration`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/integration/scgpt_leiden/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/integration/scgpt_leiden/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/integration/scgpt_leiden/main.nf \
   --help
 ```
@@ -90,7 +90,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/integration/scgpt_leiden/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/integration/scvi_leiden.qmd b/components/workflows/integration/scvi_leiden.qmd
index 7e8c8fca..58f30702 100644
--- a/components/workflows/integration/scvi_leiden.qmd
+++ b/components/workflows/integration/scvi_leiden.qmd
@@ -14,7 +14,7 @@ ID: `scvi_leiden`
 Namespace: `workflows/integration`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/integration/scvi_leiden/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/integration/scvi_leiden/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/integration/scvi_leiden/main.nf \
   --help
 ```
@@ -85,7 +85,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/integration/scvi_leiden/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/integration/totalvi_leiden.qmd b/components/workflows/integration/totalvi_leiden.qmd
index e75bfeff..1f736be0 100644
--- a/components/workflows/integration/totalvi_leiden.qmd
+++ b/components/workflows/integration/totalvi_leiden.qmd
@@ -14,7 +14,7 @@ ID: `totalvi_leiden`
 Namespace: `workflows/integration`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/integration/totalvi_leiden/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/integration/totalvi_leiden/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/integration/totalvi_leiden/main.nf \
   --help
 ```
@@ -100,7 +100,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/integration/totalvi_leiden/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/multiomics/dimensionality_reduction.qmd b/components/workflows/multiomics/dimensionality_reduction.qmd
index 1ed22508..75ed38eb 100644
--- a/components/workflows/multiomics/dimensionality_reduction.qmd
+++ b/components/workflows/multiomics/dimensionality_reduction.qmd
@@ -14,7 +14,7 @@ ID: `dimensionality_reduction`
 Namespace: `workflows/multiomics`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/multiomics/dimensionality_reduction/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/multiomics/dimensionality_reduction/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/multiomics/dimensionality_reduction/main.nf \
   --help
 ```
@@ -74,7 +74,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/multiomics/dimensionality_reduction/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/multiomics/neighbors_leiden_umap.qmd b/components/workflows/multiomics/neighbors_leiden_umap.qmd
index 7505800f..6dd1a91a 100644
--- a/components/workflows/multiomics/neighbors_leiden_umap.qmd
+++ b/components/workflows/multiomics/neighbors_leiden_umap.qmd
@@ -14,7 +14,7 @@ ID: `neighbors_leiden_umap`
 Namespace: `workflows/multiomics`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/multiomics/neighbors_leiden_umap/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/multiomics/neighbors_leiden_umap/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/multiomics/neighbors_leiden_umap/main.nf \
   --help
 ```
@@ -70,7 +70,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/multiomics/neighbors_leiden_umap/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/multiomics/process_batches.qmd b/components/workflows/multiomics/process_batches.qmd
index d565a5fd..822a9e63 100644
--- a/components/workflows/multiomics/process_batches.qmd
+++ b/components/workflows/multiomics/process_batches.qmd
@@ -14,7 +14,7 @@ ID: `process_batches`
 Namespace: `workflows/multiomics`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/multiomics/process_batches/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/multiomics/process_batches/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -34,7 +34,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/multiomics/process_batches/main.nf \
   --help
 ```
@@ -87,7 +87,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/multiomics/process_batches/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/multiomics/process_samples.qmd b/components/workflows/multiomics/process_samples.qmd
index 23875aae..9cde0d90 100644
--- a/components/workflows/multiomics/process_samples.qmd
+++ b/components/workflows/multiomics/process_samples.qmd
@@ -14,7 +14,7 @@ ID: `process_samples`
 Namespace: `workflows/multiomics`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/multiomics/process_samples/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/multiomics/process_samples/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/multiomics/process_samples/main.nf \
   --help
 ```
@@ -123,7 +123,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/multiomics/process_samples/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/multiomics/split_h5mu.qmd b/components/workflows/multiomics/split_h5mu.qmd
index 2b3b7d81..9612e69e 100644
--- a/components/workflows/multiomics/split_h5mu.qmd
+++ b/components/workflows/multiomics/split_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `split_h5mu`
 Namespace: `workflows/multiomics`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/multiomics/split_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/multiomics/split_h5mu/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/multiomics/split_h5mu/main.nf \
   --help
 ```
@@ -62,7 +62,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/multiomics/split_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/multiomics/split_modalities.qmd b/components/workflows/multiomics/split_modalities.qmd
index 9f500ab1..eab4ded5 100644
--- a/components/workflows/multiomics/split_modalities.qmd
+++ b/components/workflows/multiomics/split_modalities.qmd
@@ -14,7 +14,7 @@ ID: `split_modalities`
 Namespace: `workflows/multiomics`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/multiomics/split_modalities/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/multiomics/split_modalities/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/multiomics/split_modalities/main.nf \
   --help
 ```
@@ -58,7 +58,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/multiomics/split_modalities/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/prot/prot_multisample.qmd b/components/workflows/prot/prot_multisample.qmd
index 037811a5..3b104d7a 100644
--- a/components/workflows/prot/prot_multisample.qmd
+++ b/components/workflows/prot/prot_multisample.qmd
@@ -14,7 +14,7 @@ ID: `prot_multisample`
 Namespace: `workflows/prot`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/prot/prot_multisample/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/prot/prot_multisample/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/prot/prot_multisample/main.nf \
   --help
 ```
@@ -71,7 +71,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/prot/prot_multisample/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/prot/prot_singlesample.qmd b/components/workflows/prot/prot_singlesample.qmd
index 934b3e1e..b41faa24 100644
--- a/components/workflows/prot/prot_singlesample.qmd
+++ b/components/workflows/prot/prot_singlesample.qmd
@@ -14,7 +14,7 @@ ID: `prot_singlesample`
 Namespace: `workflows/prot`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/prot/prot_singlesample/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/prot/prot_singlesample/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/prot/prot_singlesample/main.nf \
   --help
 ```
@@ -65,7 +65,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/prot/prot_singlesample/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/qc/qc.qmd b/components/workflows/qc/qc.qmd
index e296df33..25fcf20f 100644
--- a/components/workflows/qc/qc.qmd
+++ b/components/workflows/qc/qc.qmd
@@ -14,7 +14,7 @@ ID: `qc`
 Namespace: `workflows/qc`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/qc/qc/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/qc/qc/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/qc/qc/main.nf \
   --help
 ```
@@ -78,7 +78,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/qc/qc/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/rna/rna_multisample.qmd b/components/workflows/rna/rna_multisample.qmd
index 65e41c5a..9da073a7 100644
--- a/components/workflows/rna/rna_multisample.qmd
+++ b/components/workflows/rna/rna_multisample.qmd
@@ -14,7 +14,7 @@ ID: `rna_multisample`
 Namespace: `workflows/rna`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/rna/rna_multisample/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/rna/rna_multisample/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/rna/rna_multisample/main.nf \
   --help
 ```
@@ -81,7 +81,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/rna/rna_multisample/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/rna/rna_singlesample.qmd b/components/workflows/rna/rna_singlesample.qmd
index c9c79c38..b7d582b0 100644
--- a/components/workflows/rna/rna_singlesample.qmd
+++ b/components/workflows/rna/rna_singlesample.qmd
@@ -14,7 +14,7 @@ ID: `rna_singlesample`
 Namespace: `workflows/rna`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.1/src/workflows/rna/rna_singlesample/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/2.1.2/src/workflows/rna/rna_singlesample/config.vsh.yaml){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -main-script target/nextflow/workflows/rna/rna_singlesample/main.nf \
   --help
 ```
@@ -78,7 +78,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 2.1.1 -latest \
+  -r 2.1.2 -latest \
   -profile docker \
   -main-script target/nextflow/workflows/rna/rna_singlesample/main.nf \
   -params-file params.yaml