hagis/_pkgdown.yml at main · openplantpathology/hagis · GitHub

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url: https://openplantpathology.github.io/hagis
template:
  bootstrap: 5
  params:
    bootswatch: journal

reference:
- title: Calculations
  desc: >
    Fetch and read the AAGIS regions
  contents:
  - calculate_complexities
  - calculate_diversities
  - summarize_gene

- title: Data
  desc: >
    Example data included in {hagis}
  contents:
  - P_sojae_survey
  - sample_meta

- title: Miscellaneous
  desc: >
    Helper functions for using {hagis}
  contents:
  - create_binary_matrix

- title: Plotting
  desc: >
    Visualise {hagis} outputs with `ggplot2::autoplot()`
  contents:
  - autoplot.hagis.complexities
  - autoplot.hagis.gene.summary

- title: Printing
  desc: >
    Custom print methods for {hagis} objects in your R session
  contents:
  - diversities_table
  - individual_pathotypes