Hello,
I came across this file
https://github.com/openproblems-bio/neurips2021_multimodal_viash/blob/main/src/joint_embedding/methods/baseline_totalvi/script.py
It seems as though totalVI is not using the count data (relative to how the aws hosted anndata is formatted, with count layers).
Also what does the max_epochs=20 mean at the top of the file? That would probably be far too few for a baseline.
Happy to help iterate on this baseline. Thanks!
Hello,
I came across this file
https://github.com/openproblems-bio/neurips2021_multimodal_viash/blob/main/src/joint_embedding/methods/baseline_totalvi/script.py
It seems as though totalVI is not using the count data (relative to how the aws hosted anndata is formatted, with count layers).
Also what does the
max_epochs=20mean at the top of the file? That would probably be far too few for a baseline.Happy to help iterate on this baseline. Thanks!