Commit c4e1928
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- src
- common
- check_dataset_schema
- check_yaml_schema
- create_task_readme
- extract_metadata
- extract_scores
- ontology/check_obsolete_terms
- process_task_results
- generate_qc
- get_api_info
- get_dataset_info
- get_method_info
- get_metric_info
- get_results
- get_task_info
- yaml_to_json
- datasets
- loaders
- cellxgene_census_from_source_h5ad
- cellxgene_census
- openproblems_neurips2021_bmmc
- openproblems_neurips2022_pbmc
- openproblems_v1_multimodal
- openproblems_v1
- normalization
- atac_tfidf
- l1_sqrt
- log_cp
- log_scran_pooling
- prot_clr
- sqrt_cp
- processors
- hvg
- knn
- pca
- subsample
- svd
- migration
- check_migration_status
- list_git_shas
- update_bibtex
- tasks
- batch_integration
- control_methods
- no_integration
- batch_embed
- global_embed
- global_feature
- global_graph
- perfect_integration
- celltype_embed
- celltype_jitter_embed
- random_integration
- batch_embed
- batch_feature
- batch_graph
- celltype_embed
- celltype_feature
- celltype_graph
- global_embed
- global_feature
- global_graph
- methods
- bbknn
- combat
- fastmnn_embedding
- fastmnn_feature
- liger
- mnn_correct
- pyliger
- scalex_embed
- scalex_feature
- scanorama_embed
- scanorama_feature
- scanvi
- scvi
- metrics
- asw_batch
- asw_label
- cell_cycle_conservation
- clustering_overlap
- graph_connectivity
- hvg_overlap
- isolated_label_asw
- isolated_label_f1
- kbet
- lisi
- pcr
- process_dataset
- transformers
- embed_to_graph
- feature_to_embed
- denoising
- control_methods
- no_denoising
- perfect_denoising
- methods
- alra
- knn_smoothing
- magic
- saver
- metrics
- mse
- poisson
- process_dataset
- dimensionality_reduction
- control_methods
- random_features
- spectral_features
- true_features
- methods
- densmap
- diffusion_map
- ivis
- lmds
- neuralee
- pca
- phate
- pymde
- simlr
- tsne
- umap
- metrics
- clustering_performance
- coranking
- density_preservation
- distance_correlation
- trustworthiness
- process_dataset
- label_projection
- control_methods
- majority_vote
- random_labels
- true_labels
- methods
- knn
- logistic_regression
- mlp
- naive_bayes
- scanvi_scarches
- scanvi
- seurat_transferdata
- xgboost
- metrics
- accuracy
- f1
- process_dataset
- match_modalities
- control_methods
- random_features
- true_features
- methods
- fastmnn
- harmonic_alignment
- procrustes
- scot
- metrics
- knn_auc
- mse
- process_dataset
- predict_modality
- control_methods
- meanpergene
- random_predict
- solution
- zeros
- methods
- guanlab_dengkw_pm
- knnr_py
- knnr_r
- lmds_irlba_rf
- lm
- newwave_knnr
- novel
- predict
- train
- random_forest
- simple_mlp
- predict
- train
- metrics
- correlation
- mse
- process_dataset
- spatial_decomposition
- control_methods
- random_proportions
- true_proportions
- dataset_simulator
- methods
- cell2location
- destvi
- nmfreg
- nnls
- rctd
- seurat
- stereoscope
- tangram
- vanillanmf
- metrics/r2
- process_dataset
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