Update submodule and changelog (#939)

Author: rcannood

CHANGELOG.md

@@ -1,4 +1,4 @@
-# openproblems v2.1.0
+# openproblems v3.0.0
 
 ## Breaking changes
 
@@ -22,20 +22,44 @@
 
 ## Major changes
 
+- Update results processing workflow for the new website, including new JSON schema (v4), new `combine_output` and `filter_results` components, and updated `get_dataset_info`, `get_method_info`, `get_metric_info`, `get_results`, `get_task_info` reporting scripts (PR #919).
+
+- Update paper reference from preprint to published article (PR #919).
+
 - Update Viash to 0.9.0 (PR #911).
 
 - Update Viash to 0.9.4 (PR #925).
 
+- Update Viash to 0.9.7 (PR #938).
+
 ## Minor changes
 
+- Add `openproblems_op3` (Open Problems Perturbation Prediction) scRNA-seq dataset loader from GEO GSE279945 (PR #926, PR #930).
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+- Add `--output_compression` argument to dataset loader, normalization, and processor components (PR #930).
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+- Add contact email address to Code of Conduct (PR #923).
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+- Update Docker image tags from `:1.0.0` to `:1` for `openproblems/base_python` and `openproblems/base_r` images (PR #928).
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+- Add `filter_results` component and dataset/method/metric filtering arguments to the `process_task_results` workflow (PR #935).
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+- Update `common` submodule (PR #934).
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 - Add the CELLxGENE immune cell atlas dataset as a common test resource (PR #907).
 
 - Update `dataset_id` for `tenx_visium`, `zenodo_spatial`, `zenodo_spatial_slidetags` datasets and use `mouse_brain_coronal` as a test resource in the `spatially_variable_genes` task (PR #908).
 
 - Update `get_task_info`, `get_method_info` and `get_metrics_info` reporting components with more info and extend output (PR #915).
 
+- Use new functionality in Python `openproblems` package to generate a project's README (PR #938).
+
 ## Bug fixes
 
+- Fix metric direction (`maximize`/`minimize`) handling in `generate_qc` and `render_report` components of the `process_task_results` workflow (PR #936).
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+- Fix bug in metric maximize handling and add raw scores table to the benchmark report (PR #937).
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 - Fix extracting metadata from anndata files in the `extract_metadata` component (PR #914).
 
 - Fix path in `touch` cmd in `reporting/process_task_results/run_test.sh` (PR #915).