added reason to skipif

Author: iskandr

tests/test_netchop.py

@@ -23,7 +23,7 @@
 """.strip().split()
 
 
-@pytest.mark.skipif(apple_silicon, "Can't run netChop on arm64 architecture")
+@pytest.mark.skipif(apple_silicon, reason="Can't run netChop on arm64 architecture")
 def test_simple():
     obj = NetChop()
     result = obj.predict(peptides)

tests/test_netmhc_cons.py

@@ -20,7 +20,7 @@
 
 DEFAULT_ALLELE = 'HLA-A*02:01'
 
-@pytest.mark.skipif(apple_silicon, "Can't run netMHCcons on arm64 architecture")
+@pytest.mark.skipif(apple_silicon, reason="Can't run netMHCcons on arm64 architecture")
 def test_netmhc_cons():
     alleles = [normalize_allele_name(DEFAULT_ALLELE)]
     cons_predictor = NetMHCcons(
@@ -36,15 +36,15 @@ def test_netmhc_cons():
     assert len(binding_predictions) == 4, \
         "Expected 4 epitopes from %s" % (binding_predictions,)
 
-@pytest.mark.skipif(apple_silicon, "Can't run netMHCcons on arm64 architecture")
+@pytest.mark.skipif(apple_silicon, reason="Can't run netMHCcons on arm64 architecture")
 def test_netmhc_cons_multiple_lengths():
     cons_predictor = NetMHCcons(alleles=["A6801"])
     binding_predictions = cons_predictor.predict_peptides(
         ["A" * 8, "A" * 9, "A" * 10, "A" * 11])
     assert len(binding_predictions) == 4, \
         "Expected 4 epitopes from %s" % (binding_predictions,)
 
-@pytest.mark.skipif(apple_silicon, "Can't run netMHCcons on arm64 architecture")
+@pytest.mark.skipif(apple_silicon, reason="Can't run netMHCcons on arm64 architecture")
 def test_netmhc_cons_multiple_alleles():
     alleles = 'A*02:01,B*35:02'
     cons_predictor = NetMHCcons(
@@ -59,7 +59,7 @@ def test_netmhc_cons_multiple_alleles():
     assert len(binding_predictions) == 8, \
         "Expected 4 binding predictions from %s" % (binding_predictions,)
 
-@pytest.mark.skipif(apple_silicon, "Can't run netMHCcons on arm64 architecture")
+@pytest.mark.skipif(apple_silicon, reason="Can't run netMHCcons on arm64 architecture")
 def test_netmhc_cons_process_limits():
     alleles = [normalize_allele_name(DEFAULT_ALLELE)]
     sequence_dict = {

tests/test_netmhc_version.py

@@ -22,7 +22,7 @@ def run_class_with_executable(mhc_class, mhc_executable):
 def test_executable_mismatch_3_4():
     run_class_with_executable(NetMHC3, "netMHC")
 
-@pytest.mark.skipif(apple_silicon, "Can't run netMHC-3.4 on arm64 architecture")
+@pytest.mark.skipif(apple_silicon, reason="Can't run netMHC-3.4 on arm64 architecture")
 @raises(SystemError)
 def test_executable_mismatch_4_3():
     run_class_with_executable(NetMHC4, "netMHC-3.4")
@@ -35,7 +35,7 @@ def test_wrapper_function_netMHC4():
         program_name="netMHC")
     eq_(type(wrapped_4), NetMHC4)
 
-@pytest.mark.skipif(apple_silicon, "Can't run netMHC-3.4 on arm64 architecture")
+@pytest.mark.skipif(apple_silicon, reason="Can't run netMHC-3.4 on arm64 architecture")
 def test_wrapper_function_netMHC3():
     alleles = [normalize_allele_name("HLA-A*02:01")]
     wrapped_3 = NetMHC(
@@ -51,7 +51,7 @@ def test_wrapper_failure():
            default_peptide_lengths=[9],
            program_name="netMHC-none")
 
-@pytest.mark.skipif(apple_silicon, "Can't run netMHC-3.4 on arm64 architecture")
+@pytest.mark.skipif(apple_silicon, reason="Can't run netMHC-3.4 on arm64 architecture")
 def test_multiple_lengths_netmhc3():
     alleles = [normalize_allele_name("H-2-Kb")]
     predictor = NetMHC3(alleles=alleles,