2024-12-29 04:57:22,842 - vaxrank.report:250 - INFO - WUSTL link: http://www.docm.info/api/v1/variants.json?amino_acids=[redacted]
.....
Traceback (most recent call last):
File "/home/user/miniconda/envs/mhcflurry/bin/vaxrank", line 8, in <module>
sys.exit(main())
File "/home/user/miniconda/envs/mhcflurry/lib/python3.7/site-packages/vaxrank/cli.py", line 449, in main
template_data = template_data_creator.compute_template_data()
File "/home/user/miniconda/envs/mhcflurry/lib/python3.7/site-packages/vaxrank/report.py", line 299, in compute_template_data
variant, predicted_effect, top_peptide.mutant_protein_fragment.gene_name)
File "/home/user/miniconda/envs/mhcflurry/lib/python3.7/site-packages/vaxrank/report.py", line 268, in _databases
wustl_link = self._query_wustl(predicted_effect, gene_name)
File "/home/user/miniconda/envs/mhcflurry/lib/python3.7/site-packages/vaxrank/report.py", line 253, in _query_wustl
contents = requests.get(api_url).json()
File "/home/user/miniconda/envs/mhcflurry/lib/python3.7/site-packages/requests/models.py", line 975, in json
raise RequestsJSONDecodeError(e.msg, e.doc, e.pos)
requests.exceptions.JSONDecodeError: Expecting value: line 8 column 1 (char 7)
The DoCM project and [DoCM.info](http://docm.info/) web service has been retired. All the data that was hosted on [docm.info](http://docm.info/) (TSV, VSF, and SQL formats) can be obtained from the [/data](https://github.com/griffithlab/docm/tree/master/data) directory in this repository. .... The DoCM project has been succeeded by the [Clinical Interpretation of Variants in Cancer (CIViC)](https://civicdb.org/).
