Increase timeout for notebook tests #3
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| name: CI | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the "main" branch | |
| push: | |
| branches: [ "main", "development" ] | |
| pull_request: | |
| branches: [ "main", "development" ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.runs-on }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| runs-on: [ ubuntu-latest, macos-latest ] | |
| python-version: [ "3.10", "3.12" ] | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Test notebook | |
| run: | | |
| echo Testing notebook | |
| pip install biopython requests | |
| pip install pytest nbmake | |
| pytest -vs --nbmake --nbmake-kernel=python3 --nbmake-timeout=3000 *.ipynb |