Merge branch 'test_cect' of github.com:openworm/OpenWorm into test_cect

Author: pgleeson

.github/workflows/docker-image.yml

@@ -31,3 +31,5 @@ jobs:
         ls -alth
         ls -alth output
         ls -alth output/*
+
+        more output/*/report.json 

master_openworm.py

@@ -5,7 +5,6 @@
 import shutil
 from subprocess import Popen, PIPE, check_output, STDOUT
 import os
-import pwd
 import shlex
 import sys
 import time
@@ -110,7 +109,7 @@ def execute_with_realtime_output(command, directory, env=None):
 
 try:
     os.system("echo Granting permissions for xhost && xhost +")
-except:
+except Exception:
     print("Unexpected error: %s" % sys.exc_info()[0])
 
 OW_OUT_DIR = os.environ["OW_OUT_DIR"]
@@ -122,7 +121,7 @@ def execute_with_realtime_output(command, directory, env=None):
             "sudo chown -R %s:%s %s"
             % (os.environ["USER"], os.environ["USER"], OW_OUT_DIR)
         )
-except:
+except Exception:
     print("Unexpected error: %s" % sys.exc_info()[0])
     raise
 
@@ -190,7 +189,7 @@ def execute_with_realtime_output(command, directory, env=None):
         command += " -noc302"
 
     execute_with_realtime_output(command, os.environ["SIBERNETIC_HOME"], env=my_env)
-except KeyboardInterrupt as e:
+except KeyboardInterrupt:
     pass
 
 sibernetic_sim_dir = "%s/simulations" % os.environ["SIBERNETIC_HOME"]

test.sh

@@ -0,0 +1,32 @@
+set -ex
+
+ruff format *.py
+ruff check *.py
+
+quick_test=0
+
+if [[ ($# -eq 1) && ($1 == '-q') ]]; then
+    echo "Running quick test only..."
+    quick_test=1
+else
+    echo "Running full test..."
+fi
+
+./stop.sh || true
+
+if [ "$quick_test" == 1 ]; then
+
+    ./build.sh
+
+else
+    ./rebuild.sh
+fi
+
+time ./run.sh 
+
+
+echo
+echo "  Done!"
+echo
+  
+