Merge pull request #328 from openworm/dev_0.9.3

Updated sibernetic branch

Author: pgleeson

.github/workflows/docker-image-quickrun.yml

@@ -30,5 +30,4 @@ jobs:
       run: |
         ls -alt
         ls -alt output
-        ls -alt output/S*
-        cat output/S*/report.json
+        ls -alt output/*

.github/workflows/docker-image.yml

@@ -30,5 +30,4 @@ jobs:
       run: |
         ls -alt
         ls -alt output
-        ls -alt output/C2*
-        cat output/C2*/report.json
+        ls -alt output/*

Dockerfile

@@ -86,8 +86,6 @@ RUN git clone https://github.com/openworm/sibernetic.git && \
   cd sibernetic && \
   git checkout ow-0.9.3  # fixed to a specific branch
 
-RUN cp c302/pyopenworm.conf sibernetic/   # Temp step until PyOpenWorm can be run from any dir...
-
 
 ################################################################################
 ########     Set some paths//environment variables

master_openworm.py

@@ -248,7 +248,7 @@ def execute_with_realtime_output(command, directory, env=None):
 execute_with_realtime_output('tmux send-keys -t SiberneticRecording q', os.environ['SIBERNETIC_HOME'], env=my_env)
 execute_with_realtime_output('tmux send-keys -t SiberneticRecording "exit" C-m', os.environ['SIBERNETIC_HOME'], env=my_env)
 
-time.sleep(5)
+time.sleep(3)
 
 execute_with_realtime_output('ls -alt %s'%latest_subdir, os.environ['SIBERNETIC_HOME'], env=my_env)
 

run-quick.sh

@@ -20,7 +20,7 @@ xhost +
 
 
 NOC302_PART="-e NOC302=1"
-DURATION_PART="-e DURATION=3"
+DURATION_PART="-e DURATION=10"
 
 docker run -d \
 --name openworm_$version \