Skip to content
This repository was archived by the owner on Mar 15, 2024. It is now read-only.

Commit 87f4460

Browse files
author
[email protected]
committed
fix bug
1 parent 714d31a commit 87f4460

17 files changed

+40901
-20029
lines changed

‎README.md

+2
Original file line numberDiff line numberDiff line change
@@ -65,6 +65,8 @@ cat example/work.sh
6565
<br><br><br>
6666
![gene cluster image](example/out1.notitle.svg)
6767
<br><br><br>
68+
![gene cluster image](example/out6.notitle.svg)
69+
<br><br><br>
6870
![gene cluster image](example_old/out7.notitle.svg)
6971
<br><br><br>
7072
![gene cluster image](example_old/out10.notitle.svg)

‎example/out1.notitle.svg

+7,059-7,059
Loading

‎example/out2.notitle.svg

+8,542-7,720
Loading

‎example/out3.notitle.svg

+4,939-4,939
Loading

‎example/out5.notitle.svg

+3-3
Loading

‎example/out6.cat.log

+48
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,48 @@
1+
2+
set -vex;cat pO83_CORR.indel.reverse.pO83_CORR.indel.to.pO83_CORR.indel.reverse.blast_m8.quadrilateral.2.synteny.gff >out6.pO83_CORR.indel.reverse.out6.synteny.gff;rm pO83_CORR.indel.reverse.pO83_CORR.indel.to.pO83_CORR.indel.reverse.blast_m8.quadrilateral.2.synteny.gff;echo output out6.pO83_CORR.indel.reverse.out6.synteny.gff
3+
4+
5+
set -vex;cat pO83_CORR.indel.reverse.pO83_CORR.indel.to.pO83_CORR.indel.reverse.blast_m8.quadrilateral.2.synteny.setting.conf > out6.pO83_CORR.indel.reverse.out6.synteny.setting.conf;rm pO83_CORR.indel.reverse.pO83_CORR.indel.to.pO83_CORR.indel.reverse.blast_m8.quadrilateral.2.synteny.setting.conf;echo output out6.pO83_CORR.indel.reverse.out6.synteny.setting.conf
6+
7+
8+
set -vex;cat pO83_CORR.pO83_CORR.indel.to.pO83_CORR.blast_m8.quadrilateral.1.synteny.gff >out6.pO83_CORR.out6.synteny.gff;rm pO83_CORR.pO83_CORR.indel.to.pO83_CORR.blast_m8.quadrilateral.1.synteny.gff;echo output out6.pO83_CORR.out6.synteny.gff
9+
10+
11+
set -vex;cat pO83_CORR.pO83_CORR.indel.to.pO83_CORR.blast_m8.quadrilateral.1.synteny.setting.conf > out6.pO83_CORR.out6.synteny.setting.conf;rm pO83_CORR.pO83_CORR.indel.to.pO83_CORR.blast_m8.quadrilateral.1.synteny.setting.conf;echo output out6.pO83_CORR.out6.synteny.setting.conf
12+
13+
14+
set -vex;cat pO83_CORR.indel.to.pO83_CORR.indel.reverse.blast_m8.quadrilateral.2.synteny.crosslink.conf >out6.pO83_CORR.indel.to.pO83_CORR.indel.reverse.out6.synteny.crosslink;rm pO83_CORR.indel.to.pO83_CORR.indel.reverse.blast_m8.quadrilateral.2.synteny.crosslink.conf;echo output out6.pO83_CORR.indel.to.pO83_CORR.indel.reverse.out6.synteny.crosslink
15+
16+
17+
set -vex;cat out6.pO83_CORR.indel.pO83_CORR.indel.to.pO83_CORR.blast_m8.quadrilateral.1.synteny.gff out6.pO83_CORR.indel.pO83_CORR.indel.to.pO83_CORR.indel.reverse.blast_m8.quadrilateral.2.synteny.gff >out6.pO83_CORR.indel.out6.synteny.gff;rm out6.pO83_CORR.indel.pO83_CORR.indel.to.pO83_CORR.blast_m8.quadrilateral.1.synteny.gff out6.pO83_CORR.indel.pO83_CORR.indel.to.pO83_CORR.indel.reverse.blast_m8.quadrilateral.2.synteny.gff;echo output out6.pO83_CORR.indel.out6.synteny.gff
18+
19+
20+
set -vex;cat out6.pO83_CORR.indel.pO83_CORR.indel.to.pO83_CORR.blast_m8.quadrilateral.1.synteny.setting.conf out6.pO83_CORR.indel.pO83_CORR.indel.to.pO83_CORR.indel.reverse.blast_m8.quadrilateral.2.synteny.setting.conf > out6.pO83_CORR.indel.out6.synteny.setting.conf;rm out6.pO83_CORR.indel.pO83_CORR.indel.to.pO83_CORR.blast_m8.quadrilateral.1.synteny.setting.conf out6.pO83_CORR.indel.pO83_CORR.indel.to.pO83_CORR.indel.reverse.blast_m8.quadrilateral.2.synteny.setting.conf;echo output out6.pO83_CORR.indel.out6.synteny.setting.conf
21+
22+
23+
set -vex;cat pO83_CORR.indel.to.pO83_CORR.blast_m8.quadrilateral.1.synteny.crosslink.conf >out6.pO83_CORR.indel.to.pO83_CORR.out6.synteny.crosslink;rm pO83_CORR.indel.to.pO83_CORR.blast_m8.quadrilateral.1.synteny.crosslink.conf;echo output out6.pO83_CORR.indel.to.pO83_CORR.out6.synteny.crosslink
24+
25+
26+
set -vex;cat out6.pO83_CORR.indel.to.pO83_CORR.indel.reverse.out6.synteny.crosslink out6.pO83_CORR.indel.to.pO83_CORR.out6.synteny.crosslink >out6.synteny.crosslink
27+
28+
29+
set -vex;cat out6.pO83_CORR.indel.reverse.out6.synteny.setting.conf out6.pO83_CORR.out6.synteny.setting.conf out6.pO83_CORR.indel.out6.synteny.setting.conf >out6.synteny.setting.conf
30+
31+
32+
set -vex;cat feature.color.label.6.conf out6.synteny.setting.conf >feature.color.label.6.conf.out6
33+
34+
35+
set -vex;cat out6.synteny.crosslink >feature.crossing.link.out6
36+
37+
38+
set -vex;cat out6.pO83_CORR.indel.reverse.out6.synteny.gff out6.pO83_CORR.out6.synteny.gff out6.pO83_CORR.indel.out6.synteny.gff|awk -F '{print }'|sort -u
39+
40+
41+
set -vex;sed -r 's/^(pO83_CORR.indel.reverse\s.*\.gff)\s/\1,out6.pO83_CORR.indel.reverse.out6.synteny.gff\t/' tracks.6.list >tracks.6.list.out6;cp tracks.6.list.out6 tracks.6.list.out6.tmp
42+
43+
44+
set -vex;sed -r 's/^(pO83_CORR\s.*\.gff)\s/\1,out6.pO83_CORR.out6.synteny.gff\t/' tracks.6.list.out6.tmp >tracks.6.list.out6;cp tracks.6.list.out6 tracks.6.list.out6.tmp
45+
46+
47+
set -vex;sed -r 's/^(pO83_CORR.indel\s.*\.gff)\s/\1,out6.pO83_CORR.indel.out6.synteny.gff\t/' tracks.6.list.out6.tmp >tracks.6.list.out6;cp tracks.6.list.out6 tracks.6.list.out6.tmp
48+

0 commit comments

Comments
 (0)